TCONS_00004670-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00004670-protein
Unique Name	TCONS_00004670-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	557

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00004670-protein ID=TCONS_00004670-protein|Name=TCONS_00004670-protein|organism=Clytia hemisphaerica|type=polypeptide|length=557bp
MYSFSLSVSKGFLKINLCLNTSKLQRFSTNYVSEEFKKRLKTIEHVFDLR
EPSQYYSEAREIKRKIIYHAGPTNSGKTHHALQNFFSGSSGVYCGPLRML
AAEIYHKTNQKGIPCDMITGEERLWATDKGTPSNHISCTVEMCSTHHQFE
VAVIDEIQMLRCPENGWAWTRALLGMPAKEIHLCGEPAGLDIVKKMLKST
KDTLEVHHYKRLTNLRVEKEIVQNIKRLKEGDCLVAFSQKKIYDYRKLIE
DRLGLKCSVVYGRLPSNIRLEQAKQFNEGNSKILIASDAIGMGMNLNIQR
IIFSSLDKFDGKVFGEAPVHHIKQIAGRAGRYRSRYKNGYVSTLQYDDLR
RLHSIMAEEIPNIKKAGILPSLEQFELLSMVLPEKSLAELTEVFELLMKL
DRNYFLCDVEKFKLAADELQHIPLTLQQSYIFAVAPVNISRDVVLPAMNE
FAWRVCENIQVTSEDVKDILKWPPRKKPRSVRSLQYLEHLHETLDLYRWL
SYRFEDIFIDRKGVYKLQSELERYITRAVETNMKYDTQDSKHLQHYVSRK
KRRKWRR

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_002632	XLOC_002632	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00004670	TCONS_00004670	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR001650	Helicase_C
IPR022192	SUV3_C
IPR014001	Helicase_ATP-bd
IPR027417	P-loop_NTPase

Vocabulary: **Molecular Function**
Term	Definition
GO:0016817	hydrolase activity, acting on acid anhydrides

GO Annotation

GO Assignments

This polypeptide is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0016817	hydrolase activity, acting on acid anhydrides

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001650	Helicase, C-terminal	SMART	SM00490	helicmild6	coord: 243..333 e-value: 9.8E-15 score: 65.0
IPR001650	Helicase, C-terminal	PFAM	PF00271	Helicase_C	coord: 223..332 e-value: 6.2E-15 score: 55.4
IPR001650	Helicase, C-terminal	PROSITE	PS51194	HELICASE_CTER	coord: 220..376 score: 12.785
IPR022192	Mitochondrial degradasome RNA helicase subunit, C-terminal domain	PFAM	PF12513	SUV3_C	coord: 484..529 e-value: 3.7E-15 score: 55.5
None	No IPR available	GENE3D	3.40.50.300		coord: 211..360 e-value: 1.1E-20 score: 72.9
None	No IPR available	GENE3D	3.40.50.300		coord: 52..210 e-value: 2.7E-8 score: 32.9
None	No IPR available	CDD	cd00079	HELICc	coord: 205..344 e-value: 2.03794E-11 score: 60.3293
IPR014001	Helicase superfamily 1/2, ATP-binding domain	PROSITE	PS51192	HELICASE_ATP_BIND_1	coord: 58..178 score: 6.963
IPR027417	P-loop containing nucleoside triphosphate hydrolase	SUPERFAMILY	52540	P-loop containing nucleoside triphosphate hydrolases	coord: 205..442
IPR027417	P-loop containing nucleoside triphosphate hydrolase	SUPERFAMILY	52540	P-loop containing nucleoside triphosphate hydrolases	coord: 52..176

Blast

[Close]

BLAST of TCONS_00004670-protein vs. Swiss-Prot (Human)
Match: SUV3 (ATP-dependent RNA helicase SUPV3L1, mitochondrial OS=Homo sapiens GN=SUPV3L1 PE=1 SV=1)

HSP 1 Score: 472.626 bits (1215), Expect = 6.714e-159
Identity = 231/507 (45.56%), Postives = 336/507 (66.27%), Query Frame = 0

Query:   43 IEHVFDLREPSQYYSEAREIKRKIIYHAGPTNSGKTHHALQNFFSGSSGVYCGPLRMLAAEIYHKTNQKGIPCDMITGEERLWATDKGTPSNHISCTVEMCSTHHQFEVAVIDEIQMLRCPENGWAWTRALLGMPAKEIHLCGEPAGLDIVKKMLKSTKDTLEVHHYKRLTNLRVEKEIVQNIKRLKEGDCLVAFSQKKIYDYRKLIEDRLGLKCSVVYGRLPSNIRLEQAKQFNEGNS--KILIASDAIGMGMNLNIQRIIFSSLDKFDGKVFGEAPVHHIK-----QIAGRAGRYRSRYKNGYVSTLQYDDLRRLHSIMAEEIPNIKKAGILPSLEQFELLSMVLPEKSLAELTEVFELLMKLDRNYFLCDVEKFKLAADELQHIPLTLQQSYIFAVAPVNISRDVVLPAMNEFAWRVCENIQVTSEDVKDILKWPPRKKPRSVRSLQYLEHLHETLDLYRWLSYRFEDIFIDRKGVYKLQSELERYITRAVETNMKYDTQDSKH 542
            +  + DLR P  +Y +AR ++RKII+H+GPTNSGKT+HA+Q +FS  SGVYCGPL++LA EI+ K+N  G+PCD++TGEER+     G  ++H+SCTVEMCS    +EVAVIDEIQM+R P  GWAWTRALLG+ A+E+HLCGEPA +D+V +++ +T + +EV  YKRLT + V    ++++  L+ GDC+V FS+  IY   + IE R GL+ +V+YG LP   +L QAK+FN+ N   KIL+A+DAIGMG+NL+I+RIIF SL K      GE  +  I      QIAGRAGR+ SR+K G V+T+ ++DL  L  I+   +  I+ AG+ P+ EQ E+ +  LP+ +L+ L ++F    ++D  YF+C+++ FK +A+ +QHIPL+L+  Y+F  AP+N  +  V  ++ +FA +   N  +T   ++  +KW P   P++++ L  LE +H+ LDLY WLSYRF D+F D   +  LQ EL+  I   V    K       H
Sbjct:  179 LRKISDLRIPPNWYPDARAMQRKIIFHSGPTNSGKTYHAIQKYFSAKSGVYCGPLKLLAHEIFEKSNAAGVPCDLVTGEERVTVQPNGKQASHVSCTVEMCSVTTPYEVAVIDEIQMIRDPARGWAWTRALLGLCAEEVHLCGEPAAIDLVMELMYTTGEEVEVRDYKRLTPISVLDHALESLDNLRPGDCIVCFSKNDIYSVSRQIEIR-GLESAVIYGSLPPGTKLAQAKKFNDPNDPCKILVATDAIGMGLNLSIRRIIFYSLIKPSINEKGERELEPITTSQALQIAGRAGRFSSRFKEGEVTTMNHEDLSLLKEILKRPVDPIRAAGLHPTAEQIEMFAYHLPDATLSNLIDIFVDFSQVDGQYFVCNMDDFKFSAELIQHIPLSLRVRYVFCTAPINKKQPFVCSSLLQFARQYSRNEPLTFAWLRRYIKW-PLLPPKNIKDLMDLEAVHDVLDLYLWLSYRFMDMFPDASLIRDLQKELDGIIQDGVHNITKLIKMSETH 683

The following BLAST results are available for this feature:

BLAST of TCONS_00004670-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00004670-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
SUV3	6.714e-159	45.56	ATP-dependent RNA helicase SUPV3L1, mitochondrial ...	[more]

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TCONS_00004670-protein (polypeptide) - C. hemisphaerica