TCONS_00004632-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00004632-protein
Unique NameTCONS_00004632-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length305

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00004632-protein ID=TCONS_00004632-protein|Name=TCONS_00004632-protein|organism=Clytia hemisphaerica|type=polypeptide|length=305bp
GEIYWKNLKGPQRRRSSVGIAMDSLKIAANKVKKSPKALKCKIDNALNKD
KLTDNWIHNRENVQNGVVFNMKVLGKKVATTAQGKGCTDDAVKEMVQQHK
VKGKTEKLLKVSMRVDSKKMIIRDLVTHELLEDVPVNRISYCTADPNFPK
VFALIARERGSKTLFTHAFLTNKKEMAEAIALTVAQAFTMAYEEWDEKSK
ERQREVEDEQASDALELYKDLASESPKPDSNPFKKEDQEDDFNFISSSLA
PRVQTIEIVEPLDNETHSDGASSDDDEFSRSVTAKETFLFSHRTHLRPVS
RVPVM
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_002609XLOC_002609Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00004632TCONS_00004632Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR006020PTB/PI_dom
IPR011993PH_dom-like
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR006020PTB/PI domainSMARTSM00462PTB_9coord: 64..201
e-value: 7.3E-18
score: 75.4
IPR006020PTB/PI domainPFAMPF14719PID_2coord: 69..205
e-value: 5.2E-17
score: 62.2
IPR006020PTB/PI domainPROSITEPS01179PIDcoord: 66..194
score: 15.29
IPR011993PH domain-likeGENE3D2.30.29.30coord: 27..200
e-value: 6.4E-27
score: 93.5
IPR011993PH domain-likeSUPERFAMILY50729PH domain-likecoord: 49..201
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 260..279

Blast
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BLAST of TCONS_00004632-protein vs. Swiss-Prot (Human)
Match: ARH (Low density lipoprotein receptor adapter protein 1 OS=Homo sapiens GN=LDLRAP1 PE=1 SV=3)

HSP 1 Score: 138.272 bits (347), Expect = 1.227e-38
Identity = 75/200 (37.50%), Postives = 120/200 (60.00%), Query Frame = 0 
Query:   22 MDSLKIAANKVKKSPKALKCKIDNALNKDKLTDNWIHNRENVQNGVVFNMKVLGKKVATTAQGKGCTDDAVKEMVQQHKVKGKTEKLLKVSMRVDSKKMIIRDLVTHELLEDVPVNRISYCTADPNFPKVFALIARERGSKTLFTHAFLTNKKEMAEAIALTVAQAFTMAYEEWDEKSKERQ-REVEDEQASDALELYKD 220
            MD+LK A   + +SP   K          KL +NW   RE +  G++F++K LG  +    +G+  +  A+K +V   K  GK  KL KV+++V  + +I+ D +T++L+E+V + RISYCTAD    KVFA IA+ + +++L  HAFL  K++MA+A+ LTVAQAF +A+E W    +E++ R+   ++  D L   +D
Sbjct:    1 MDALKSAGRALIRSPSLAKQSWGGGGRHRKLPENWTDTRETLLEGMLFSLKYLGMTLVEQPKGEELSAAAIKRIVATAKASGK--KLQKVTLKVSPRGIILTDNLTNQLIENVSIYRISYCTADKMHDKVFAYIAQSQHNQSLECHAFLCTKRKMAQAVTLTVAQAFKVAFEFWQVSKEEKEKRDKASQEGGDVLGARQD 198
The following BLAST results are available for this feature:
BLAST of TCONS_00004632-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
ARH1.227e-3837.50Low density lipoprotein receptor adapter protein 1... [more]
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