Sequence
The following sequences are available for this feature:
polypeptide sequence
>TCONS_00004519-protein ID=TCONS_00004519-protein|Name=TCONS_00004519-protein|organism=Clytia hemisphaerica|type=polypeptide|length=212bp Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following
gene feature:
This polypeptide derives from the following
transcript feature(s):
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: Biological Process
Term Definition
GO:0006413 translational initiation
Vocabulary: Molecular Function
Term Definition
GO:0003743 translation initiation factor activity GO:0003723 RNA binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category
Term Accession
Term Name
biological_process
GO:0006413 translational initiation
molecular_function
GO:0003723 RNA binding
molecular_function
GO:0003743 translation initiation factor activity
InterPro
Analysis Name:
InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
20 40 60 80 100 120 140 160 180 200 Expect = 8.6E-30 / Score = 115.0 Expect = 4.0E-19 / Score = 68.1 Score = 11.01 Expect = 1.1E-40 / Score = 138.1 Score = Score = Sequence SM00652 PF01176 PS50832 G3DSA:2.40.50.140 mobidb-lite SSF50249
IPR Term IPR Description Source Source Term Source Description Alignment
IPR001253 Translation initiation factor 1A (eIF-1A) SMART SM00652 eIF1neu4 coord: 20..103 IPR006196 RNA-binding domain, S1, IF1 type PFAM PF01176 eIF-1a coord: 24..86 IPR006196 RNA-binding domain, S1, IF1 type PROSITE PS50832 S1_IF1_TYPE coord: 5..89 None No IPR available GENE3D 2.40.50.140 coord: 2..146 None No IPR available MOBIDB_LITE mobidb-lite disorder_prediction coord: 109..212 IPR012340 Nucleic acid-binding, OB-fold SUPERFAMILY 50249 Nucleic acid-binding proteins coord: 5..106
Blast
BLAST of TCONS_00004519-protein vs. Swiss-Prot (Human)
Match:
EIF1A (Probable RNA-binding protein EIF1AD OS=Homo sapiens GN=EIF1AD PE=1 SV=1)
HSP 1 Score: 139.813 bits (351), Expect = 3.320e-42
Identity = 74/153 (48.37%), Postives = 105/153 (68.63%), Query Frame = 0
Query: 1 MSKATKRKHVTKEILEDYYVPEDDEIIVKIVTGRGNNLHEVMTPKGEQYLVSMPTKFRRNVWVKRGDFVVVSPIKEGVKVQGEIVYILYAKQIKYLKSEKIWPEAFYEDSGKDSAKNGKNEGPARNIADENLDESEESESDNDDDLFVNPNHR 153
MS+ATKRKHV KE+L ++ VP D + IV+++ GNNLHEV T +G+++LVSMP+K+R+N+W+KRGDF++V PI+EG KV+ EI ++L ++ L+ E WPEAF E + K N +N + E EES S++D DLFVN N R
Sbjct: 1 MSQATKRKHVVKEVLGEHIVPSDQQQIVRVLRTPGNNLHEVETAQGQRFLVSMPSKYRKNIWIKRGDFLIVDPIEEGEKVKAEISFVLCKDHVRSLQKEGFWPEAFSEVAEKH---NNRNRQTQPELPAEPQLSGEESSSEDDSDLFVNTNRR 150
The following BLAST results are available for this feature:
BLAST of TCONS_00004519-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (
Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens) )
Total hits: 1
M S K A T K R K H V T K E I L E D Y Y V P E D D E I I V K I V T G R G N N L H E V M T P K G E Q Y L V S M P T K F R R N V W V K R G D F V V V S P I K E G V K V Q G E I V Y I L Y A K Q I K Y L K S E K I W P E A F Y E D S G K D S A K N G K N E G P A R N I A D E N L D E S E E S E S D N D D D L F V N P N H R P I F R N D D E S E E S D S S E E E D F E E S E D D Q N G N S L R H H N D E K T F V D D E G E S N V K E K M K T V K I 20 40 60 80 100 120 140 160 180 200 Expect = 3.32e-42 / Id = 48.37 Sequence EIF1A
Match Name E-value Identity Description
EIF1A 3.320e-42 48.37 Probable RNA-binding protein EIF1AD OS=Homo sapien... [more]
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