Sequence
The following sequences are available for this feature:
polypeptide sequence
>TCONS_00004509-protein ID=TCONS_00004509-protein|Name=TCONS_00004509-protein|organism=Clytia hemisphaerica|type=polypeptide|length=1365bp Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following
gene feature:
This polypeptide derives from the following
transcript feature(s):
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: Molecular Function
Term Definition
GO:0005488 binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category
Term Accession
Term Name
molecular_function
GO:0005488 binding
InterPro
Analysis Name:
InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
200 400 600 800 1000 1200 Score = Score = Score = Score = Score = Score = Score = Score = Expect = 1.0E-24 / Score = 98.1 Expect = 0.0025 / Score = 20.7 Expect = 2.9E-22 / Score = 78.2 Expect = 6.6E-12 / Score = 44.0 Expect = 1.2E-6 / Score = 28.2 Score = Score = Score = Sequence Coil Coil mobidb-lite mobidb-lite mobidb-lite mobidb-lite mobidb-lite mobidb-lite SM01349 G3DSA:1.25.10.10 G3DSA:1.25.10.10 PF12348 SSF48371 SSF48371
IPR Term IPR Description Source Source Term Source Description Alignment
None No IPR available COILS Coil Coil coord: 873..893 None No IPR available COILS Coil Coil coord: 438..458 None No IPR available MOBIDB_LITE mobidb-lite disorder_prediction coord: 936..1106 None No IPR available MOBIDB_LITE mobidb-lite disorder_prediction coord: 530..566 None No IPR available MOBIDB_LITE mobidb-lite disorder_prediction coord: 1340..1365 None No IPR available MOBIDB_LITE mobidb-lite disorder_prediction coord: 625..687 None No IPR available MOBIDB_LITE mobidb-lite disorder_prediction coord: 712..835 None No IPR available MOBIDB_LITE mobidb-lite disorder_prediction coord: 852..879 IPR034085 TOG domain SMART SM01349 TOG_3 coord: 222..454 IPR011989 Armadillo-like helical GENE3D 1.25.10.10 coord: 9..516 IPR011989 Armadillo-like helical GENE3D 1.25.10.10 coord: 791..1348 IPR024395 CLASP N-terminal domain PFAM PF12348 CLASP_N coord: 240..423 IPR016024 Armadillo-type fold SUPERFAMILY 48371 ARM repeat coord: 233..436 IPR016024 Armadillo-type fold SUPERFAMILY 48371 ARM repeat coord: 19..208
Blast
BLAST of TCONS_00004509-protein vs. Swiss-Prot (Human)
Match:
TGRM1 (TOG array regulator of axonemal microtubules protein 1 OS=Homo sapiens GN=TOGARAM1 PE=1 SV=4)
HSP 1 Score: 215.312 bits (547), Expect = 2.964e-56
Identity = 166/541 (30.68%), Postives = 275/541 (50.83%), Query Frame = 0
Query: 41 LVDVLSQVLCDQIPDNRKLAMDLLCELIPSYRGD----DLDTNIGL-LFPQLLQNLLHHQLNVKKSVLQVLHVYYRHTKDISHGLQHLIDHGINTDLKAVRNEVLVSIPALMSTGFAASQLDRLVISIINCLNLIGNGESILPVTLCLEHLRNI---IGENEFDIILDQLDPSLSNLYRAVV------QNPTY-TWEGS-----------QKQTSNQMADIIPNEILNNLDSEKSWQTRSDAINDL----FTFVSQTMDNNSLLYFCRRILDYISLLVDDANFNVALVSMNILHQIIIRTSEQVKVHMDLIIQILLKKLSDGKLIMRKINLRIALSLMHSLSPMVFLKSIFPILKNKSSRVREEILNMIIAALLSFPSSEFNLVLLPDDIAFTLLDNRKRVRHASLECFAILAQQLGPGNLSPLVSAVDILERKNKNAEGLLLAVQSRLGRKMLPKINENELVQYAVKLPTS---KSTDGQLKPDVAWIISGMSVSGY-----ESSRSEMSDYSES----CDRRILSA--GRNKLPWQENQ 537
L L +VL + D ++L + LL +++ RG L+ L L PQL+ +L ++K LQ+LH+ + + L+ LI G+ + +R + +P L++T LD L II+ +G+ E+ L+ I +G++ F + +L +L Y + Q P Y E S SN IIP E+ + L ++ ++ R+ A+ +L F + ++SL+ F + + L+DD+NF V ++ +LH ++IR EQV+ + +I +K L+D KL++++ ++I L LM + P L + LK+K SRVREE++N+ I +LL++PS +F+L L D+A L+D+++RVR A+LE FA+LA +G G S L AVD +E ++ N +G++ AVQ+RL RK LP++ E V+YAV +P+S +S D W+++G + R M Y C RR+LSA G+NKLPW+ Q
Sbjct: 136 LYRALGRVLVEGGSDEKRLCLQLLSDVL---RGQGEAGQLEEAFSLALLPQLVVSLREENPALRKDALQILHICLKRSP--GEVLRTLIQQGLESTDARLRASTALLLPILLTTEDLLLGLD-LTEVIISLARKLGDQETEEESETAFSALQQIGERLGQDRFQSYISRLPSALRRHYNRRLESQFGSQVPYYLELEASGFPEDPLPCAVTLSNSNLKFGIIPQELHSRLLDQEDYKNRTQAVEELKQVLGKFNPSSTPHSSLVGFISLLYN----LLDDSNFKVVHGTLEVLHLLVIRLGEQVQQFLGPVIAASVKVLADNKLVIKQEYMKIFLKLMKEVGPQQVLCLLLEHLKHKHSRVREEVVNICICSLLTYPSEDFDLPKLSFDLAPALVDSKRRVRQAALEAFAVLASSMGSGKTSILFKAVDTVELQD-NGDGVMNAVQARLARKTLPRLTEQGFVEYAVLMPSSAGGRSNHLAHGADTDWLLAGNRTQSAHCHCGDHVRDSMHIYGSYSPTICTRRVLSAGKGKNKLPWENEQ 665 HSP 2 Score: 97.8265 bits (242), Expect = 2.717e-20
Identity = 74/282 (26.24%), Postives = 132/282 (46.81%), Query Frame = 0
Query: 1090 KENLIETSPKPEANKTDLQNMKPFD----AVTAALRMLNSSPEEWESKIDGLDMTLELLKKEGDDI-CEGHAVVTAILNQVKNLRSQITRKALNCIGQAFVHAPRTCEPDLEAILKTVLPKAGDTNQFIKSDTEQAIELLVENVNPYKAMPALVSCGVAHLNGHVRKISSKALADISERIGYAKFCSQRGNLMAAAKLAQDQHPESRYHGRRIMLQLLEYPELMDTLRRQLKPANFKAVHDIIENLKLRGLEPA---SGSATLRRSMRGSAPYNSPSTTRSR 1363
KE + + PE DL ++PF A+T ALR+L + E+WE KI+GL+ L + + + H A++ +VKNLRS ++R A+ C+ F + ++ + +L+ +K +L KAG++N FI+ D ++A+ +V NV P +A+ +L++ G RY+GR+++ ++ +P L + + + + D + NL+ +GL + SA RRS GS N+ S++ SR
Sbjct: 1231 KERMPSVTHSPEI--MDLSELRPFSKPEIALTEALRLL--ADEDWEKKIEGLNFIRCLAAFHSEILNTKLHETNFAVVQEVKNLRSGVSRAAVVCLSDLFTYLKKSMDQELDTTVKVLLHKAGESNTFIREDVDKALRAMVNNVTPARAVVSLINGG------------------------------------------------QRYYGRKMLFFMMCHPNFEKMLEKYVPSKDLPYIKDSVRNLQQKGLGEIPLDTPSAKGRRSHTGSVG-NTRSSSVSR 1459
The following BLAST results are available for this feature:
