TCONS_00004346-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00004346-protein
Unique Name	TCONS_00004346-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	446

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00004346-protein ID=TCONS_00004346-protein|Name=TCONS_00004346-protein|organism=Clytia hemisphaerica|type=polypeptide|length=446bp
METNGQMDENTIGNIEIILKSIVISIFILSGIIGNSSVIHAIRTYPKLRT
VPNYFVFNLAVADLLFSLTGMVMILITTVSKGWVLGVKMCNFGGLLNSVF
CTTSIWTLVMISLHRYFAVSKPMLVKRVYTKKRTLLMIVCIWIFAFLISV
PPLFGWSQFVEGTNFCTVDGRKNMSYSIFLLMTDYFFPFLFLSGLYLRIF
FVLKKHENTMKRHKSVKPIPDLAEVESEIMTADEAPKSPNLFSSPSEIRA
ADTKRYFEALQNKAQTDGVVTNLNSPVRESTETLVIRQNEENNNKIQRNG
KRHISFCDDSNQKIGKSDSTKNPNGIIKATLKRTKTGSKRKKFFKEVKVT
KMLLIVVCGFFLCWTPFLVAGVLYAFNAVPSDLKLLTIGIYFACLNSCLN
PFIYGVMNTNFRYAFQTMARNFLAAVRACVNKDKITISKKDGVCRI

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_002426	XLOC_002426	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00004346	TCONS_00004346	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR000611	NPY_rcpt
IPR000276	GPCR_Rhodpsn
IPR017452	GPCR_Rhodpsn_7TM

Vocabulary: **Biological Process**
Term	Definition
GO:0007186	G-protein coupled receptor signaling pathway

Vocabulary: **Cellular Component**
Term	Definition
GO:0016021	integral component of membrane

Vocabulary: **Molecular Function**
Term	Definition
GO:0004983	neuropeptide Y receptor activity
GO:0004930	G-protein coupled receptor activity

GO Annotation

GO Assignments

This polypeptide is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0007186	G-protein coupled receptor signaling pathway
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0004930	G-protein coupled receptor activity
molecular_function	GO:0004983	neuropeptide Y receptor activity

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000611	Neuropeptide Y receptor family	PRINTS	PR01012	NRPEPTIDEYR	coord: 44..56 score: 22.03 coord: 97..112 score: 33.24 coord: 74..86 score: 29.02 coord: 391..400 score: 28.64 coord: 402..415 score: 39.94
IPR000276	G protein-coupled receptor, rhodopsin-like	PRINTS	PR00237	GPCRRHODOPSN	coord: 19..43 score: 24.32 coord: 97..119 score: 31.71 coord: 177..200 score: 20.64 coord: 349..373 score: 33.69 coord: 386..412 score: 33.09 coord: 52..73 score: 38.78 coord: 133..154 score: 28.54
IPR000276	G protein-coupled receptor, rhodopsin-like	SMART	SM01381	7TM_GPCR_Srsx_2	coord: 28..419 e-value: 4.0E-4 score: -48.7
IPR000276	G protein-coupled receptor, rhodopsin-like	PFAM	PF00001	7tm_1	coord: 34..404 e-value: 1.0E-58 score: 198.6
IPR000276	G protein-coupled receptor, rhodopsin-like	PROSITE	PS00237	G_PROTEIN_RECEP_F1_1	coord: 103..119
None	No IPR available	GENE3D	1.20.1070.10		coord: 1..434 e-value: 1.3E-84 score: 283.5
None	No IPR available	SUPERFAMILY	81321	Family A G protein-coupled receptor-like	coord: 18..211 coord: 336..420
IPR017452	GPCR, rhodopsin-like, 7TM	PROSITE	PS50262	G_PROTEIN_RECEP_F1_2	coord: 34..404 score: 43.421

Blast

[Close]

BLAST of TCONS_00004346-protein vs. Swiss-Prot (Human)
Match: 5HT1A (5-hydroxytryptamine receptor 1A OS=Homo sapiens GN=HTR1A PE=1 SV=3)

HSP 1 Score: 141.739 bits (356), Expect = 1.136e-37
Identity = 113/431 (26.22%), Postives = 190/431 (44.08%), Query Frame = 0

Query:    2 ETNGQMDENTIGNIEI-----ILKSIVISIFILSGIIGNSSVIHAIRTYPKLRTVPNYFVFNLAVADLLFSLTGMVMILITTVSKGWVLGVKMCNFGGLLNSVFCTTSIWTLVMISLHRYFAVSKPMLVKRVYTKKRTLLMIVCIWIFAFLISVPPLFGW--SQFVEGTNFCTVDGRKNMSYSIFLLMTDYFFPFLFLSGLYLRIFFVLKKHENTMKRHKSVKPIPDL-AEVESEIMTADEAPKSPNLFSSPSEIRAADTKRYFEALQNKAQTDGVVTNLNSPVRESTETLVIRQNEENNNKIQR--NGKRHISFCDDSNQKIGKSDSTKNPNGIIKATLKRTKTGSKRKKFFKEVKVTKMLLIVVCGFFLCWTPFLVAGVLYAFNAVPSDLKLLTIGI--YFACLNSCLNPFIYGVMNTNFRYAFQTMAR 420
            ET G    NT G  ++     ++ S+++   I   ++GN+ V+ AI     L+ V NY + +LAV DL+ S+  + M  +  V   W LG   C+    L+ + CT+SI  L  I+L RY+A++ P+      T +R   +I   W+  FLIS+PP+ GW   +     + CT+   K+  Y+I+     ++ P L +  LY RIF   +      +  K+VK +    A+       A +  KS N  S         ++ +   +++KA   G     N  VR+  +   +   E     + R  N K H+    ++        S +  N       +R     ++    +E K  K L I++  F LCW PF +  ++  F      +  L   I  +    NS LNP IY   N +F+ AF+ + +
Sbjct:   20 ETGG----NTTGISDVTVSYQVITSLLLGTLIFCAVLGNACVVAAIALERSLQNVANYLIGSLAVTDLMVSVLVLPMAALYQVLNKWTLGQVTCDLFIALDVLCCTSSILHLCAIALDRYWAITDPIDYVNKRTPRRAAALISLTWLIGFLISIPPMLGWRTPEDRSDPDACTIS--KDHGYTIYSTFGAFYIPLLLMLVLYGRIFRAAR-----FRIRKTVKKVEKTGADTRHGASPAPQPKKSVNGESG--------SRNWRLGVESKA---GGALCANGAVRQGDDGAALEVIE-----VHRVGNSKEHLPLPSEAGPTPCAPASFERKN-------ERNAEAKRKMALARERKTVKTLGIIMGTFILCWLPFFIVALVLPFCESSCHMPTLLGAIINWLGYSNSLLNPVIYAYFNKDFQNAFKKIIK 416

The following BLAST results are available for this feature:

BLAST of TCONS_00004346-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00004346-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
5HT1A	1.136e-37	26.22	5-hydroxytryptamine receptor 1A OS=Homo sapiens GN...	[more]

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TCONS_00004346-protein (polypeptide) - C. hemisphaerica