TCONS_00004270-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00004270-protein
Unique NameTCONS_00004270-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length495

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00004270-protein ID=TCONS_00004270-protein|Name=TCONS_00004270-protein|organism=Clytia hemisphaerica|type=polypeptide|length=495bp
KIFFDNIRDDQEHNFEKQTEKKADTLNIQYDFSSVMHYGKFSFAQDPSKP
TILPIQNPNQEIGQRDAVSDTDIEQINILYSCSVSGNGWSKWSEYGACSV
DCIKQRSRFCMNSDKASCPNPTNYGYNRYGVDLQETKCTSNECAGVIDGN
WGSWGDWGECSEACGTGKHSRTRQCNNPTPQNDGQSCKGSASEEKECFIK
PCNSGSLDCTFDDDSDRLCGWTSEDSMNFQWTRNRGGTPSTSTGPSEDKT
SGSGYYMYIETSSPAREGWKARLTSSLIGAQVVKCIKLSYHMYGASIGTL
NIIAKDQTTNEEHILFEKSGNQGNTWQTIEVTVQNSNPYKIVLEGVRGFD
WQGDIAIDDIEFTNGACIKQVVTTPSPTPTILRVGCFQDQGYINGRRPFT
HRGDLSGLAISTNQLSELRDHYYDVVRYCGSLARNNGFKFFAIQQYYECW
TGPTFDVQYSRDGESKGCWPEQQMGYGPHIVGQYLSNMVYQWSDL
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_002371XLOC_002371Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00004270TCONS_00004270Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000998MAM_dom
IPR001506Peptidase_M12A
IPR000884TSP1_rpt
IPR024079MetalloPept_cat_dom
IPR013320ConA-like_dom
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Vocabulary: Molecular Function
TermDefinition
GO:0004222metalloendopeptidase activity
GO:0008237metallopeptidase activity
Vocabulary: Biological Process
TermDefinition
GO:0006508proteolysis
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006508 proteolysis
cellular_component GO:0016020 membrane
molecular_function GO:0004222 metalloendopeptidase activity
molecular_function GO:0008237 metallopeptidase activity
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000998MAM domainPRINTSPR00020MAMDOMAINcoord: 350..363
score: 39.85
coord: 284..295
score: 31.58
coord: 331..345
score: 26.67
coord: 217..235
score: 21.88
IPR000998MAM domainSMARTSM00137MAM_2coord: 204..369
e-value: 9.2E-45
score: 164.7
IPR000998MAM domainPFAMPF00629MAMcoord: 209..367
e-value: 7.8E-44
score: 149.3
IPR000998MAM domainPROSITEPS50060MAM_2coord: 207..369
score: 34.356
IPR000998MAM domainCDDcd06263MAMcoord: 209..367
e-value: 2.43022E-48
score: 164.088
IPR001506Peptidase M12APRINTSPR00480ASTACINcoord: 29..44
score: 48.65
coord: 68..81
score: 41.79
IPR001506Peptidase M12APFAMPF01400Astacincoord: 2..83
e-value: 4.4E-23
score: 81.8
NoneNo IPR availablePRINTSPR01705TSP1REPEATcoord: 167..178
score: 46.5
coord: 149..162
score: 44.39
coord: 186..197
score: 35.04
NoneNo IPR availableGENE3D2.60.120.200coord: 203..367
e-value: 1.5E-50
score: 171.0
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 230..250
NoneNo IPR availableSUPERFAMILY55486Metalloproteases ("zincins"), catalytic domaincoord: 2..83
IPR000884Thrombospondin type-1 (TSP1) repeatSMARTSM00209TSP1_2coord: 151..203
e-value: 2.6E-13
score: 60.2
coord: 89..144
e-value: 1.4E-5
score: 34.6
IPR000884Thrombospondin type-1 (TSP1) repeatGENE3D2.20.100.10coord: 86..143
e-value: 7.5E-5
score: 22.5
coord: 147..202
e-value: 4.5E-16
score: 58.4
IPR000884Thrombospondin type-1 (TSP1) repeatPFAMPF00090TSP_1coord: 153..202
e-value: 2.1E-8
score: 34.1
coord: 90..143
e-value: 0.15
score: 12.2
IPR000884Thrombospondin type-1 (TSP1) repeatPROSITEPS50092TSP1coord: 87..144
score: 8.268
IPR000884Thrombospondin type-1 (TSP1) repeatPROSITEPS50092TSP1coord: 148..203
score: 13.211
IPR000884Thrombospondin type-1 (TSP1) repeatSUPERFAMILY82895TSP-1 type 1 repeatcoord: 87..119
IPR000884Thrombospondin type-1 (TSP1) repeatSUPERFAMILY82895TSP-1 type 1 repeatcoord: 147..202
IPR024079Metallopeptidase, catalytic domainGENE3D3.40.390.10coord: 1..84
e-value: 1.8E-21
score: 76.5
IPR013320Concanavalin A-like lectin/glucanase domainSUPERFAMILY49899Concanavalin A-like lectins/glucanasescoord: 206..367

Blast
[Close]
BLAST of TCONS_00004270-protein vs. Swiss-Prot (Human)
Match: MDGA1 (MAM domain-containing glycosylphosphatidylinositol anchor protein 1 OS=Homo sapiens GN=MDGA1 PE=1 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 1.227e-31
Identity = 73/184 (39.67%), Postives = 105/184 (57.07%), Query Frame = 0 
Query:  198 FIKPCNSGSLD---CTFDDDSDRLCGWTSEDSMNFQWTRNRGGTP----STSTGPSEDKT-SGSGYYMYIETSSPAREGWKARLTSSLIGAQV-VKCIKLSYHMYGASIGTLNIIAKDQTTN--EEHILFEKSGNQGNTWQTIEVTVQNSNPYKIVLEGVRGFDWQGDIAIDDIEFTNGACIKQ 370
            + +P NS +L    C F+D+  ++CG+T + + NF WTR    T     S +TGP  D + +  GYYM+IETS P   G +ARL S L  A     C+   YHMYG  IG+LN++ + +     + H  +  SGN+GN WQ   V +  S P++I+ EGVRG  + GDIAIDD+    G C ++
Sbjct:  739 YTEPINSPNLSDNTCHFEDE--KICGYTQDLTDNFDWTRQNALTQNPKRSPNTGPPTDISGTPEGYYMFIETSRPRELGDRARLVSPLYNASAKFYCVSFFYHMYGKHIGSLNLLVRSRNKGALDTHA-WSLSGNKGNVWQQAHVPISPSGPFQIIFEGVRGPGYLGDIAIDDVTLKKGECPRK 919
The following BLAST results are available for this feature:
BLAST of TCONS_00004270-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
MDGA11.227e-3139.67MAM domain-containing glycosylphosphatidylinositol... [more]
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