TCONS_00004204-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00004204-protein
Unique NameTCONS_00004204-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length804

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00004204-protein ID=TCONS_00004204-protein|Name=TCONS_00004204-protein|organism=Clytia hemisphaerica|type=polypeptide|length=804bp
MNDLREKEHYLHAIVKEFLEIQDYTDTLEAYEEELTEKNVEPDSNQLPSP
QDESCIKNKDDLTRMFQLGNSASFWKLWDQHIPKGKQEENDTQRLVFSLH
LYFAVFPLLEDEGRLSPVEASMVEFKKYLESNGAALSQTTEFVAFYALPY
VPNPKNHPAFKKLFEDEWNEDLKERLTLFLDDTLYSDPLPYLYKLLKGAS
SISNHDLEERENDKEVMKEEIKQSEDRANSYFQKFAKLQEDHTNLIGIAA
ELVDSLESCVRGKMVTPDYLQHICERLFAGSISKEDKLDLTVPGTASSML
RASVSMDTQQTTHTRQNIPPSLTTKEKANLNFNIIKKDLSGIGSARNKAL
LLQALIWRLIRVPENQRNKALNLYISNDLLGFSSGNLSPFFERIMDSKDS
IATEYLMRFVNVTASFSAGRQYMSQSENFLRLLVKSLMKTKKSSAISENI
LGGLQKLSLRRNVQTILIDSAVVEWLFSVLDDPDDLSDYTLEYSVALLMN
LCLRTSGKKRCCFQPKKVLKLLSDLLGFDNVEIRPYINGTLYSILSLPSL
RETAISMGYEDILKEYLFDQSHDERQLNFIIKQLNTSTPTSDDDVQTDGE
DDDDDDEEGDAVEAELDKPETISAMKNEQSGEDLLQQRYTNSISSNSPSK
KPKKIKSSLDPDLPYTRPLTPASRAQNRSSINNQSISYVGGADMNPTISF
ERPRTSSGKGARKTTPADEASPRSGSREKSSDKPKKGQKTYMKGFSSRPK
IPRTPEVHSNPSSARSTASSNEGVPPLTRSISPSRPDSSKGLKPLSRDSN
KMSR
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_002347XLOC_002347Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00004204TCONS_00004204Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR011989ARM-like
IPR006594LisH
IPR016024ARM-type_fold
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO:0005488binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005488 binding
molecular_function GO:0005515 protein binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 14..41
NoneNo IPR availableCOILSCoilCoilcoord: 207..241
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 35..54
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 642..804
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 584..624
IPR011989Armadillo-like helicalGENE3D1.25.10.10coord: 459..637
e-value: 1.4E-7
score: 30.6
coord: 189..458
e-value: 0.22
score: 10.3
IPR006594LIS1 homology motifPROSITEPS50896LISHcoord: 7..39
score: 8.227
IPR016024Armadillo-type foldSUPERFAMILY48371ARM repeatcoord: 385..585

Blast
[Close]
BLAST of TCONS_00004204-protein vs. Swiss-Prot (Human)
Match: ARMC9 (LisH domain-containing protein ARMC9 OS=Homo sapiens GN=ARMC9 PE=1 SV=2)

HSP 1 Score: 462.225 bits (1188), Expect = 4.712e-151
Identity = 315/836 (37.68%), Postives = 460/836 (55.02%), Query Frame = 0 
Query:    1 MNDLREKEHYLHAIVKEFLEIQDYTDTLEAYEEELTEKNVEPDSNQLPSPQDESCIKNKDDLTRMFQLGNSASFWKLWDQHIPKGKQEEND-TQRLVFSLHLYFAVFPLLEDEGR--LSPVEASMVEFKKYLESNGAALSQTTEFVAFYALPYVPNPKNHPAFKKLFEDEWNEDLKERLTLFLDDTLYSDPLPYLYKLLKGASSISNHDLEERENDKEVMKE---EIKQSEDRANSYFQKFAKLQEDHTNLIGIAAELVDSLESCVRGKMVTPDYLQHICERLFAGSI--SKEDKLDLTVPGTASSMLRASVSMDTQQTTHTRQNIP--PSLTTKEKANLNFNIIKKDLSGIGSARNKALLLQALIWRLIRV-PENQRNKALNLYISNDLLGFSSGNLSPFFERIMDSKDSIATEYLMRFVNVTASFSAGRQYMSQSENFLRLLVKSLMKTKKSSAISENILGGLQKLSLRRNVQTILIDSAVVEWLFSVLDDPDDLSDYTLEYSVALLMNLCLRTSGKKRCCFQPKKVLKLLSDLLGFDNVEIRPYINGTLYSILSLPSLRETAISMGYEDILKEYLFDQSHDE-RQLNFIIKQLNTSTPTSDDDVQTDGEDDDDDDEEGDAVEAELDKPETISAMKNEQSGEDLLQQRYTNSISSNSPSKKPKKIKSSLDPDLPYTRPLTPASR----------------AQNRSSINNQSIS------YVGGADMNP-------TISFERPRTSSGKGARKTTPADEASPRSGSREKSSDKPKKGQKT--YMKGFSSRPKIPRTPEVHS-NPSSARSTASSNEGVPPLTRSISP---SRPDSS 789
            M D+   E  L  +VKE+L+  ++ DTL+ + +E   K          S +D   +  + DL   F  G+   F+ LW++HI    ++ +   Q+L F LH++FA++ L    GR     ++  +  FK YLE+ GAALSQTTEF+ FYALP+VPNP  HP+FK+LF+D W  +LK +L  FL     +   P L  + K          E  +++KE++++   ++ ++E R+ +Y +++ K+Q D+ NLIG+ AELVDSLE+ V GKM+TP+YLQ +C RLF+  +  S    +D T PGTAS+MLRAS++          +++P  PSL        ++  +KKDL  +GS R KA LLQAL WRL    P  QR   L  YISNDLL   S N     + ++ S   +  +Y+ R +N  AS + GR Y++Q+   L++L   L +  K     EN+LG LQK SLRR +QT +I   ++ WL  VL DPD LSDYTLEYSVALLMNLCLR++GK  C      VLK+LSDLLG +N EI+PY+NG LYSILS+PS+RE A +MG EDIL+ ++ + + +  RQ+ FIIKQLN S    D  +++D ++D+DD+E+ D +EA+LDK E I     E SGE LL   Y   +++   +++          D P  RP+TP                   AQ+  + + Q++       Y  G    P       +    +P     +G ++       +PR   RE   D P  G  T      F+ +P+ P TPE+   NP  A+++      + PL  S  P   SRP S+
Sbjct:    1 MGDILAHESELLGLVKEYLDFAEFEDTLKTFSKECKIKGKPLCKTVGGSFRDSKSLTIQKDLVAAFDNGDQKVFFDLWEEHISSSIRDGDSFAQKLEFYLHIHFAIYLLKYSVGRPDKEELDEKISYFKTYLETKGAALSQTTEFLPFYALPFVPNPMVHPSFKELFQDSWTPELKLKLIKFLALISKASNTPKLLTIYK----------ENGQSNKEILQQLHQQLVEAERRSVTYLKRYNKIQADYHNLIGVTAELVDSLEATVSGKMITPEYLQSVCVRLFSNQMRQSLAHSVDFTRPGTASTMLRASLA------PVKLKDVPLLPSL--------DYEKLKKDLI-LGSDRLKAFLLQALRWRLTTSHPGEQRETVLQAYISNDLLDCYSHNQRSVLQ-LLHSTSDVVRQYMARLINAFASLAEGRLYLAQNTKVLQMLEGRLKEEDKDIITRENVLGALQKFSLRRPLQTAMIQDGLIFWLVDVLKDPDCLSDYTLEYSVALLMNLCLRSTGKNMCAKVAGLVLKVLSDLLGHENHEIQPYVNGALYSILSVPSIREEARAMGMEDILRCFIKEGNAEMIRQIEFIIKQLN-SEELPDGVLESDDDEDEDDEEDHDIMEADLDKDELIQPQLGELSGEKLLTTEYLGIMTNTGKTRRKGLANVQWSGDEPLQRPVTPGGHRNGYPVVEDQHTPPQTAQHARNGHPQALPAAHEAVYREGKPSTPESCVSSSSAIIAKPGEWLPRGRQEEPRPAPTTPRQ-PREAPQD-PGNGVTTRECASAFTCKPRAPCTPEMLDWNPPKAKASV-----LAPLFSSCGPQQASRPGST 802
The following BLAST results are available for this feature:
BLAST of TCONS_00004204-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
ARMC94.712e-15137.68LisH domain-containing protein ARMC9 OS=Homo sapie... [more]
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