TCONS_00004108-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00004108-protein
Unique NameTCONS_00004108-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1262

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00004108-protein ID=TCONS_00004108-protein|Name=TCONS_00004108-protein|organism=Clytia hemisphaerica|type=polypeptide|length=1262bp
MFRVIQKILLIVTASLSLVEGRIVSPCTCPCPYGLTSGMKHCPNSYCKNI
FQCKDNGCLVYKFDTDGKDASKCICLRGYIGKQCGAYKPMDKFSSVVQQF
TTSSNLLSPKLATTSASFTPQLATTSTLLSPQLAATFTLLSPQLATTSAS
FTPQLATTSTLLSPQLAATFTLLSPQLATTSASFTPQLAATSTLLTPQLA
ATFTLLSPQLATTSASFTPQLAAIFTLLSPQLATTSASFTPQLADTFTLL
FPQLATTSASLSPEMTNTSVSERSMQHTMTKCTSSRAQSSPKPTSTRVAI
QIISESYSNHPLSAPQSTISDSIATTATTATTIHPLVPSKKMFTAVASTT
HHLMENTMAVATVTPTNVDTTPINPYVLVNHNQLQTPNIKTGERLVINGC
RFRKNGPPITRGNYDPVYIQDGWNIIGTTMTMMDASNLYQMTSLEFAKSA
PEHVGWYRCGIRHKNGSMINIDSRPVYVSLQDVSVSRFRVKASEKAEQAE
ADQIKLRFEMLIEDLDLKKPVTVQNAKIMTHINGQTFWRSKILVSDVSSP
EEKRKVCGVMHDLSEQGELKAGVEILTPMDCCVDKEKNTPVAIDDTIKRQ
CRAGSRRTSEKKCHLHPGEGPSWLYLSRCPPNPTKDALKGLKRAPTCEKG
EERKENRCIAVEEKASKLKDLVSKGHAIKDEEDVTLTADIVEEIAKNVAF
KGKGGQKREVTVKEKVASDTLFAVNDIMKANEKILAKAQLSMNTSTKIVK
SLEKISISIAKSLNKSHPSFTFTDSNLAMTISLVNHNHSSTSVVTYKEPI
QRETTLGIYGKEIDLVTDKSMNGMVVLPETAVTSNKSIALRSVTYRKGVF
FLNQHQLDNITSGGQVIEHAVGSNVLSVSVGEEERRTELEEPVTISFRND
SQSLGTGVIMFWDFEKGDWSGEGCWPINETKPDIISWNCSHLTNFALLIN
VNQDFNNPFALQLLTYIGGGISIGALLITLFIYLSIRKLRRRLAPRLLIC
LSLSLLLLLAAFIGLVDKTQWKLGCKIIAGAIQYLTLATFFWMFCEGINL
YRNFVILFKKSPHENIVFVKMSVFAWGTPAVFVFLTVFLRLEEVGSKEIC
LVHGSAFYFGTLLPVGLILIFNWIVLVLAIRGMKTDKILHNNKRQTPTWL
EIWRAFICSIILGLAWTFGIFAIGDLRDIFQWLFCVFNAFQGLFIFLLFV
VKNQEVQKYILKVFNHSTVSSTGNSLDNATIKNGCCPASPDCKTNTTQYK
HLSSCSFGNTNV
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_002287XLOC_002287Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00004108TCONS_00004108Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000832GPCR_2_secretin-like
IPR000203GPS
IPR013032EGF-like_CS
IPR017981GPCR_2-like
IPR000742EGF-like_dom
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
Vocabulary: Molecular Function
TermDefinition
GO:0004930G-protein coupled receptor activity
GO:0004888transmembrane signaling receptor activity
Vocabulary: Biological Process
TermDefinition
GO:0007186G-protein coupled receptor signaling pathway
GO:0007166cell surface receptor signaling pathway
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0007166 cell surface receptor signaling pathway
biological_process GO:0007186 G-protein coupled receptor signaling pathway
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0004930 G-protein coupled receptor activity
molecular_function GO:0004888 transmembrane signaling receptor activity
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000832GPCR, family 2, secretin-likePRINTSPR00249GPCRSECRETINcoord: 1027..1050
score: 33.55
coord: 1181..1202
score: 21.19
coord: 963..987
score: 29.15
IPR000832GPCR, family 2, secretin-likePFAMPF000027tm_2coord: 961..1195
e-value: 2.4E-29
score: 102.3
IPR000203GPS motifSMARTSM00303GPS_3coord: 905..954
e-value: 0.0047
score: 26.2
IPR000203GPS motifPFAMPF01825GPScoord: 911..948
e-value: 1.8E-7
score: 31.6
IPR000203GPS motifPROSITEPS50221GPScoord: 906..954
score: 10.7
NoneNo IPR availableGENE3D1.20.1070.10coord: 950..1233
e-value: 3.0E-25
score: 88.3
IPR013032EGF-like, conserved sitePROSITEPS00022EGF_1coord: 73..84
IPR013032EGF-like, conserved sitePROSITEPS01186EGF_2coord: 73..84
IPR017981GPCR, family 2-likePROSITEPS50261G_PROTEIN_RECEP_F2_4coord: 961..1203
score: 25.406
IPR000742EGF-like domainPROSITEPS50026EGF_3coord: 49..85
score: 8.808

Blast
[Close]
BLAST of TCONS_00004108-protein vs. Swiss-Prot (Human)
Match: AGRL2 (Adhesion G protein-coupled receptor L2 OS=Homo sapiens GN=ADGRL2 PE=1 SV=2)

HSP 1 Score: 160.229 bits (404), Expect = 1.914e-39
Identity = 112/369 (30.35%), Postives = 189/369 (51.22%), Query Frame = 0 
Query:  870 AVGSNVLSVSVGEEERRTELEEPVTISFRN-DSQSLGTGVIMFWDFEK----GDWSGEGCWPINETKPDIISWNCSHLTNFALLIN----VNQDFNNPFALQLLTYIGGGISIGALLITLFIYLSIRKLRRRLAPRLLICLSLSLLLLLAAFIGLV--DKTQWKLGCKIIAGAIQYLTLATFFWMFCEGINLYRNFVILFK-KSPHENIVFVKMSVFAWGTPAVFVFLTVFLRLEEVGSKEICLVHGSAFYFGTLL-PVGLILIFNWIVLVLAIRGMKTDKILHNNK--------RQTPTWLEIWRAFICSIILGLAWTFGIFAIGDLRDIFQWLFCVFNAFQGLFIFLLFVVKNQEVQKYILKVFNHS 1217
            AV S+V+SVS+ +E  R  L +PV  +  + D  +       FW++ +    G WS +GC  ++  K    +  CSHLTNFA+L+       +D  +   L ++T++G  IS+  L I +F +   R L+   + R  I  +L + L +A FI L+  DKT++ + C I AG + +  LA F WM  EG+ LY   V +F+ +   +   +V   +F    PA  V ++  +  +  G+++ C +H   ++  + + PV  I++ N I LV+ +  M    + H+N             +W+    A +C  +LGL W+FG+  I +   +  +LF +FNAFQG+FIF+      ++V+K   K F HS
Sbjct:  748 AVNSHVISVSINKESSRVYLTDPVLFTLPHIDPDNYFNANCSFWNYSERTMMGYWSTQGCKLVDTNKTRT-TCACSHLTNFAILMAHREIAYKDGVHELLLTVITWVGIVISLVCLAICIFTFCFFRGLQ---SDRNTIHKNLCINLFIAEFIFLIGIDKTKYAIACPIFAGLLHFFFLAAFAWMCLEGVQLYLMLVEVFESEYSRKKYYYVAGYLF----PATVVGVSAAIDYKSYGTEKACWLHVDNYFIWSFIGPVTFIILLNIIFLVITLCKM----VKHSNTLKPDSSRLENIKSWVLGAFALLC--LLGLTWSFGLLFINEETIVMAYLFTIFNAFQGVFIFIFHCALQKKVRKEYGKCFRHS 1102
The following BLAST results are available for this feature:
BLAST of TCONS_00004108-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
AGRL21.914e-3930.35Adhesion G protein-coupled receptor L2 OS=Homo sap... [more]
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