TCONS_00003868-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00003868-protein
Unique NameTCONS_00003868-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length206

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00003868-protein ID=TCONS_00003868-protein|Name=TCONS_00003868-protein|organism=Clytia hemisphaerica|type=polypeptide|length=206bp
MKAGTVPKPPPVIDGEYSMFGHTQKTDDEIIQPLESQGLKRLYAVKSKKF
DHIVEMKKLNHSILVNYMELLDIMIDAPGSEERVKKIEEIKLMFINLHHL
INEFRPHQARETLRIMLHRQKLQRVETTERLRENIEKARTILKNSLTNLN
TPSAPSTSGNTSKEQQEVSETKPNLSDNKKVISTEHQDTLASLQHKIMAD
ILDGIP
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_002173XLOC_002173Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00003868TCONS_00003868Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR009244Mediatior_Med7
Vocabulary: Molecular Function
TermDefinition
GO:0001104RNA polymerase II transcription cofactor activity
Vocabulary: Biological Process
TermDefinition
GO:0006357regulation of transcription from RNA polymerase II promoter
Vocabulary: Cellular Component
TermDefinition
GO:0016592mediator complex
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006357 regulation of transcription from RNA polymerase II promoter
cellular_component GO:0016592 mediator complex
molecular_function GO:0001104 RNA polymerase II transcription cofactor activity
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR009244Mediator complex, subunit Med7PFAMPF05983Med7coord: 7..142
e-value: 1.8E-44
score: 152.1
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 144..180
NoneNo IPR availableSUPERFAMILY140718Mediator hinge subcomplex-likecoord: 49..143

Blast
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BLAST of TCONS_00003868-protein vs. Swiss-Prot (Human)
Match: MED7 (Mediator of RNA polymerase II transcription subunit 7 OS=Homo sapiens GN=MED7 PE=1 SV=1)

HSP 1 Score: 166.777 bits (421), Expect = 5.889e-52
Identity = 79/159 (49.69%), Postives = 120/159 (75.47%), Query Frame = 0 
Query:    1 MKAGTVPKPPPVIDGEYSMFGHTQKTDDEIIQPLESQGLKRLYAVKSKKFDHIVEMKKLNHSILVNYMELLDIMIDAPGSEERVKKIEEIKLMFINLHHLINEFRPHQARETLRIMLHRQKLQRVETTERLRENIEKARTILKNSLTNLNTPSAPSTSG 159
            ++ G  PKPPP I   Y MFG+  + DD II+PLESQG++RL+ ++   FDH  E++KLN SIL+N+++LLDI+I +PGS +R +K+E++KL+F+++HHLINE+RPHQARETLR+M+  QK QR+ET ER ++++E+   +++N L +L      S +G
Sbjct:   26 IQEGLAPKPPPPIKDSYMMFGNQFQCDDLIIRPLESQGIERLHPMQ---FDHKKELRKLNMSILINFLDLLDILIRSPGSIKREEKLEDLKLLFVHVHHLINEYRPHQARETLRVMMEVQKRQRLETAERFQKHLERVIEMIQNCLASLPDDLPHSEAG 181
The following BLAST results are available for this feature:
BLAST of TCONS_00003868-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
MED75.889e-5249.69Mediator of RNA polymerase II transcription subuni... [more]
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