TCONS_00003809-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00003809-protein
Unique NameTCONS_00003809-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length269

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00003809-protein ID=TCONS_00003809-protein|Name=TCONS_00003809-protein|organism=Clytia hemisphaerica|type=polypeptide|length=269bp
IDMGRQSRTEINLQRLLRHCETMATESQHKETKVNWRLAKYLETADDQIC
KMETDKNLKVPEEVITEYKRKVTFLKDVVQAEKTQDPLERILICQHLLPT
SVISSTSSINLDEEQQRKTNNKTKELHLQIKGKHQNDLRRQLLGEKGSHP
HSLSKRETENNTENNIDEIIKQHHDIQEKVAEEMILMTQHMKQTTLRSRD
IINKDKQELERSNKVVDHNFQKLKVESDRLEEMNKRRCSCSIWLMLGVVC
IVFINMIIFIKFFPKKRGY
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_002122XLOC_002122Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00003809TCONS_00003809Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR019150Vesicle_transport_protein_Use1
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 159..179
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 145..164
NoneNo IPR availableCDDcd15860SNARE_USE1coord: 173..232
e-value: 1.70381E-13
score: 62.1968
IPR019150Vesicle transport protein, Use1PFAMPF09753Use1coord: 8..263
e-value: 7.2E-67
score: 225.6

Blast
[Close]
BLAST of TCONS_00003809-protein vs. Swiss-Prot (Human)
Match: USE1 (Vesicle transport protein USE1 OS=Homo sapiens GN=USE1 PE=1 SV=2)

HSP 1 Score: 168.318 bits (425), Expect = 2.795e-51
Identity = 95/268 (35.45%), Postives = 150/268 (55.97%), Query Frame = 0 
Query:    7 SRTEINLQRLLRHCETMATESQHKETKVNWRLAKYLETADDQICKMETDKNLKVPEEVITEYKRKVTFLKDVVQAEKTQDPLERILICQHLLPTSVISSTSSINLDEEQQRKTNNKTKELHLQIKGKHQNDLRRQLLGEKGSHPH---------SLSKRETENNTENNIDEIIKQHHDIQEKVAEEMILMTQHMKQTTLRSRDIINKDKQELERSNKVVDHNFQKLKVESDRLEEMNKRRCSCSIWLMLGVVCIVFINMIIFIKFFPK 265
            SR E+NL RLL  CE MA E +  +    WRL KY+   +D +  ++   + K   EVI EY  KV FLK ++QAEK     E+ L  Q L P  V ++           R+    TK +HLQ + ++ +++R +LLG   + P          + S+  +E      +D ++++H ++QEK+AEEM+ + + +K  TL ++ +I KD Q L  S K+ D N +KLK ES+RLE+  ++  +  +W ML +VC +FI+MI+FI+  PK
Sbjct:    4 SRLELNLVRLLSRCEAMAAEKRDPD---EWRLEKYVGALEDMLQALKVHAS-KPASEVINEYSWKVDFLKGMLQAEKLTSSSEKALANQFLAPGRVPTTA----------RERVPATKTVHLQSRARYTSEMRSELLGTDSAEPEMDVRKRTGVAGSQPVSEKQLAAELDLVLQRHQNLQEKLAEEMLGLARSLKTNTLAAQSVIKKDNQTLSHSLKMADQNLEKLKTESERLEQHTQKSVNWLLWAMLIIVCFIFISMILFIRIMPK 257
The following BLAST results are available for this feature:
BLAST of TCONS_00003809-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
USE12.795e-5135.45Vesicle transport protein USE1 OS=Homo sapiens GN=... [more]
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