TCONS_00003214-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00003214-protein
Unique NameTCONS_00003214-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length439

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00003214-protein ID=TCONS_00003214-protein|Name=TCONS_00003214-protein|organism=Clytia hemisphaerica|type=polypeptide|length=439bp
MEPSRELATQTHDQITLFKKNLPAPKLKNSCLIGGQNTRDQISELQQGVD
ILTGTPGKIADFVDSGKLKLDQVRFLVFDEVDGLLNQNNGALIERLFNTC
PKMSADGRRLQLIICSATLHNFDVKKLAEKIMHFPTWIDLKGQDSVPDTV
HHTVCVVDPKVDTAWHFLKPKIRTDGVHEQDDKHPSSTFPETYSEAVKVL
KGEYVIKAIEKQNMDQGIIFCRTKLDCDNMERYLKQRNAQQFSCVCLHGD
RNPKERGSNLQQFKDKQVKFLICTDVAARGLDIKGVPFVINVTLPDEKAN
YVHRIGRVGRADRMGLALSLVSKCREKVWYHKCESRGRNCRNTRLLEKGG
CTIWYDEMKYLQDIEEHLGETITMVASDMNIPVNEFDGKVTYGKRRKRED
DTKKYHQEELAPAVSELAVLEKQVQISYLNFMNDWNTAV
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_001774XLOC_001774Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00003214TCONS_00003214Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001650Helicase_C
IPR014001Helicase_ATP-bd
IPR011545DEAD/DEAH_box_helicase_dom
IPR027417P-loop_NTPase
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO:0005524ATP binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005524 ATP binding
molecular_function GO:0003676 nucleic acid binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001650Helicase, C-terminalSMARTSM00490helicmild6coord: 228..312
e-value: 7.5E-29
score: 111.8
IPR001650Helicase, C-terminalPFAMPF00271Helicase_Ccoord: 203..311
e-value: 5.2E-27
score: 94.3
IPR001650Helicase, C-terminalPROSITEPS51194HELICASE_CTERcoord: 201..387
score: 20.064
IPR014001Helicase superfamily 1/2, ATP-binding domainSMARTSM00487ultradead3coord: 1..153
e-value: 0.0052
score: 19.1
IPR014001Helicase superfamily 1/2, ATP-binding domainPROSITEPS51192HELICASE_ATP_BIND_1coord: 1..137
score: 19.362
NoneNo IPR availableGENE3D3.40.50.300coord: 196..426
e-value: 4.1E-36
score: 124.1
NoneNo IPR availableGENE3D3.40.50.300coord: 1..147
e-value: 1.3E-24
score: 86.0
NoneNo IPR availableCDDcd00079HELICccoord: 190..320
e-value: 1.84615E-30
score: 113.102
IPR011545DEAD/DEAH box helicase domainPFAMPF00270DEADcoord: 1..127
e-value: 8.2E-33
score: 113.5
IPR027417P-loop containing nucleoside triphosphate hydrolaseSUPERFAMILY52540P-loop containing nucleoside triphosphate hydrolasescoord: 2..161
coord: 201..326

Blast
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BLAST of TCONS_00003214-protein vs. Swiss-Prot (Human)
Match: DDX1 (ATP-dependent RNA helicase DDX1 OS=Homo sapiens GN=DDX1 PE=1 SV=2)

HSP 1 Score: 547.354 bits (1409), Expect = 0.000e+0
Identity = 268/438 (61.19%), Postives = 331/438 (75.57%), Query Frame = 0 
Query:    1 MEPSRELATQTHDQITLFKKNLPAPKLKNSCLIGGQNTRDQISELQQGVDILTGTPGKIADFVDSGKLKLDQVRFLVFDEVDGLLNQNNGALIERLFNTCPKMSADGRRLQLIICSATLHNFDVKKLAEKIMHFPTWIDLKGQDSVPDTVHHTVCVVDPKVDTAWHFL-KPKIRTDGVHEQDDKHPSSTFPETYSEAVKVLKGEYVIKAIEKQNMDQGIIFCRTKLDCDNMERYLKQ------RNAQQFSCVCLHGDRNPKERGSNLQQFKDKQVKFLICTDVAARGLDIKGVPFVINVTLPDEKANYVHRIGRVGRADRMGLALSLVSKCREKVWYHKCESRGRNCRNTRLLEKGGCTIWYDEMKYLQDIEEHLGETITMVASDMNIPVNEFDGKVTYGKRRKREDDTKKYHQEELAPAVSELAVLEKQVQISYLNF 431
            +EPSRELA QT + I  FKK +  PKL+   +IGG   RDQ+S L+ GVDI+ GTPG++ D V +GKL L QVRFLV DE DGLL+Q     I R+ N  P++++DG+RLQ+I+CSATLH+FDVKKL+EKIMHFPTW+DLKG+DSVPDTVHH V  V+PK D  W  L K  IRTD VH +D+  P +  PE +SEA+K+LKGEY ++AI++  MDQ IIFCRTK+DCDN+E+Y  Q      +   QFSCVCLHGDR P ER  NL++FK   V+FLICTDVAARG+DI GVP+VINVTLPDEK NYVHRIGRVGRA+RMGLA+SLV+  +EKVWYH C SRG+ C NTRL E GGCTIWY+EM+ L +IEEHL  TI+ V  D+ +PV+EFDGKVTYG++R     + K H + LAP V ELA LEK+ Q S+L+ 
Sbjct:  292 VEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWYHVCSSRGKGCYNTRLKEDGGCTIWYNEMQLLSEIEEHLNCTISQVEPDIKVPVDEFDGKVTYGQKRAAGGGSYKGHVDILAPTVQELAALEKEAQTSFLHL 729
The following BLAST results are available for this feature:
BLAST of TCONS_00003214-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
DDX10.000e+061.19ATP-dependent RNA helicase DDX1 OS=Homo sapiens GN... [more]
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