TCONS_00003145-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00003145-protein
Unique Name	TCONS_00003145-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	738

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00003145-protein ID=TCONS_00003145-protein|Name=TCONS_00003145-protein|organism=Clytia hemisphaerica|type=polypeptide|length=738bp
MADIDSIVAQLKQTKKGRLKYDQQNWNEIFDETSKTPELRISPFSIKTNS
RLATMTKSHSIGNQNRKMYDDKITRRTPSSSSKKDNEPTDRPKNISNKSV
EKQAAENKNDRLITPPVSPEHLLHDFNKSYDQALNQLTNLRLQNMKDAIN
KINFEHRCNLDDINQRSEERVLYGRSQVETHRDSPRESKEISEFVQKRNQ
RKLVAERQKQQAEMEIKAIEDQRNRLEEMRKAIEEKKALAQRMGDEGRRL
VENVVNIANSNKNVNDGYKQLAMQMRNEYGAFLTMINATKSDDGTHIESK
YRTVAEKLQFFRDCSSKCDLILKKVEEEKQQEEKRRLEAEALRKKEAAEA
EAKRKAEEAQKLKDAASKPAPTSAPPPAYNQATTTASPPSRAVPTPSVQE
AAPELVPIYPFMEKALNMFVAKDAFDIYLILRKLVSDTERKHQPMSKSTD
ATVKKEKFDLFKVVNTQINAISDESPKHLMEKILKLNTLLKNGEVVFSGK
KISTKGNETAMALVKDLTAKKLVMQGQSQVASSFKTAFPIAAVCAGIWTL
FPDVGDLLLGYFYLKCPYLVPLHFPKTDKISSTEYYQMLGYNVDDGKVEE
DDKYLNKLSGYVRLYASIIQMEMPPDLAGRGHPHGLENGWVWFTRVLNLE
PVELVTATIIFDFLEVAGHAMLKRFGKQFEKLLSLVKDELMPKINAITPS
HAKAGATRLKMFLDSCIKEGNIKPPEGVLTQRWWATGR

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_001742	XLOC_001742	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00003145	TCONS_00003145	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR012476	GLE1

Vocabulary: **Cellular Component**
Term	Definition
GO:0005643	nuclear pore

Vocabulary: **Biological Process**
Term	Definition
GO:0016973	poly(A)+ mRNA export from nucleus

GO Annotation

GO Assignments

This polypeptide is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0016973	poly(A)+ mRNA export from nucleus
cellular_component	GO:0005643	nuclear pore

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 123..143
None	No IPR available	COILS	Coil	Coil	coord: 320..365
None	No IPR available	COILS	Coil	Coil	coord: 195..246
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 348..398
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 52..117
IPR012476	GLE1-like	PFAM	PF07817	GLE1	coord: 446..686 e-value: 8.6E-70 score: 234.7

Blast

[Close]

BLAST of TCONS_00003145-protein vs. Swiss-Prot (Human)
Match: GLE1 (Nucleoporin GLE1 OS=Homo sapiens GN=GLE1 PE=1 SV=2)

HSP 1 Score: 252.292 bits (643), Expect = 1.378e-73
Identity = 121/290 (41.72%), Postives = 178/290 (61.38%), Query Frame = 0

Query:  445 MSKSTDATVKKEKFDLFKVVNTQINAISDESPKHLMEKILKLNTLLKNGEVVFSGKKISTKGNETAMALVKDLTAKKLVMQGQSQVASSFKTAFPIAAVCAGIWTLFPDVGDLLLGYFYLKCPYLVPLHFPKTDKISSTEYYQMLGYNVDDGKVEEDDKYLNKLSGYVRLYASIIQMEMPPDLAGRGHPHGLENGWVWFTRVLNLEPVELVTATIIFDFLEVAGHAMLKRFGKQFEKLLSLVKDELMPKINAITPSHAKAGATRLKMFLDSCIKEGNIKPPEGVLTQRWW 734
            ++ S D+  KK K DL K     ++ IS  +   L E   K+++LL    V   G+ +S   N   +  V+   A+K V QG+ +VAS  + AFPIA V +GIW L P VGDL+L + + KCPY VP +    + ++  +Y +MLGY V D KVE+ D +L ++SG +RLYA+IIQ+  P       HPHGL +GW W  ++LN+EP+  VTAT++FDFLEV G+A++K++  QF K+L L+K++  P+I AIT S       RLK FL+ C++  +I  P+G LT  +W
Sbjct:  407 LTNSKDSQAKKIKMDLQKAATIPVSQISTIAGSKLKEIFDKIHSLLSGKPVQSGGRSVSVTLNPQGLDFVQYKLAEKFVKQGEEEVASHHEAAFPIAVVASGIWELHPRVGDLILAHLHKKCPYSVPFYPTFKEGMALEDYQRMLGYQVKDSKVEQQDNFLKRMSGMIRLYAAIIQLRWPYGNRQEIHPHGLNHGWRWLAQILNMEPLSDVTATLLFDFLEVCGNALMKQYQVQFWKMLILIKEDYFPRIEAITSSGQMGSFIRLKQFLEKCLQHKDIPVPKGFLTSSFW 696

The following BLAST results are available for this feature:

BLAST of TCONS_00003145-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00003145-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
GLE1	1.378e-73	41.72	Nucleoporin GLE1 OS=Homo sapiens GN=GLE1 PE=1 SV=2	[more]

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TCONS_00003145-protein (polypeptide) - C. hemisphaerica