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Sequence
The following sequences are available for this feature:
polypeptide sequence >TCONS_00003061-protein ID=TCONS_00003061-protein|Name=TCONS_00003061-protein|organism=Clytia hemisphaerica|type=polypeptide|length=1032bp
VMGQQWKDKFFDNFSETDLEEVKIEKTSTQYRFGGEKPVPATERVTFPCY
ILGEKTKLTADVVPRDVPFLMSKGEMKTRGFKIDFDTDSLTIKDKSHELE
TTYNGHFKLPLWNYEEVNLSVDEMTENEKKAMITKLHRQFRHQPAHVTEG
LLRRAEILTPELKRMNIEVAVNCDICKLYKRSPPRPVVALPIASKFNDVI
AMDLKVFSLTKGIYFIHYIDLFTRFSKASVIKSKEPKVVVDSFISTWIAS
GMGAPNKVLVDNGGEFDNPELLEAMEQFNIEVCATAAYSPWSNGTCERNH
AVVDLMVNKMLEESPGLKLDIVLAHAVNAKNSLQNHNGFAPIQLVTGALP
NLPNVLNNKLPALETTTSPELENHLSAMHSARRAFMKAESSEKIRRAIRH
PVRSCEQMFQNGDKVFYKRDDSPRWKGPGKVLGHLGSIVYVIHGSRLVRC
ASCRFIKVSATNENVKESDEQNIKGERQPKVNENDPENPIQPSNVNEQTK
NVEENQSEVNKPTRPKRQTKAPPKFVPEEGVWQDEEANVVFIPKERHNEP
AVVKAKQDEVDNWKRLEAVDVVDDRNQRVISTRWVITEKTYPDGSIKPKA
RLVVRGFEEEGETQVDAPTAAKMTLRTVLAISANRKWSVKTIDIKAAFLQ
GRAIERDIYLIPPDESNLQGKLWRLRKSAYGLADAARNWYLSVRDTLIKL
NCKQSNLDKAVFRWYHNETLEGILVLHVDDFMVTGTERFQTVMKALNEKF
QVGSRQEGKFKYVGLNIETQNDGIEISQDQYASEIPEVNVEDKDRPNDDK
LKPHELRDLRGIIGQVQWVASQTRPDLSFDSLELSVERNKATLSTLKRAK
KVVKKLKSSSSTVKMKDIGQSPKLSVYPDAGFCNLPDGVSSTQGFVILLE
GSVNSTVIDWGARKIKRKVSSTLEAEALSLKETINNAIYIGCLLSEFLFN
DFTNNRIPIQVFTDNKPLEQSIRSTKQVQERRLRVDIGEVQRLVEEKEIK
DINWVPSDDMLGDGLTKRDRIKSYENLRKVLI Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
This polypeptide derives from the following transcript feature(s):
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0003676 | nucleic acid binding |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0015074 | DNA integration |
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0015074 |
DNA integration |
| molecular_function |
GO:0003676 |
nucleic acid binding |
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
| IPR Term | IPR Description | Source | Source Term | Source Description | Alignment |
|---|
| IPR012337 | Ribonuclease H-like domain | GENE3D | 3.30.420.10 | | coord: 186..392
e-value: 9.9E-22
score: 77.0 |
| IPR012337 | Ribonuclease H-like domain | SUPERFAMILY | 53098 | Ribonuclease H-like | coord: 197..354 |
| IPR013103 | Reverse transcriptase, RNA-dependent DNA polymerase | PFAM | PF07727 | RVT_2 | coord: 575..785
e-value: 5.8E-38
score: 130.8 |
| IPR001584 | Integrase, catalytic core | PFAM | PF00665 | rve | coord: 196..301
e-value: 6.9E-14
score: 52.0 |
| IPR001584 | Integrase, catalytic core | PROSITE | PS50994 | INTEGRASE | coord: 182..349
score: 19.272 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 464..525 |
| None | No IPR available | CDD | cd09272 | RNase_HI_RT_Ty1 | coord: 876..1017
e-value: 1.80732E-16
score: 76.7381 |
| None | No IPR available | SUPERFAMILY | 56672 | DNA/RNA polymerases | coord: 633..843 |
Blast
The following BLAST results are available for this feature:
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