TCONS_00002634-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00002634-protein
Unique Name	TCONS_00002634-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	405

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00002634-protein ID=TCONS_00002634-protein|Name=TCONS_00002634-protein|organism=Clytia hemisphaerica|type=polypeptide|length=405bp
MANQFIGTLLLCLQLFKVHLACGPGSGTSRGRLRDHNIKGNRLPDVPEFS
TAASGPFPGAKHRTDPGLVDILSTDIVFKDKSYNANARKSIKTCHSSLKK
LAGVVKRFWKNKYKVYVLEGYLPYGKKSLYKHGKHSLHYAGQAFDISLTN
SPENTDDRLGEVVPEHTLRTLAGLAYYNAQFTFVQLKKNHLHVSCDSTGH
EVSRGRCFSGESSVRTPSKTIAMKDLKIGDSVLTMNPNGQPTFSEVTMML
HKDGTRYVEDFVNIETNSGKSITLSPYHLIQTLETGYVFSKDVKINQTLQ
TYDDSKNTFQLSQVRNISFDTAGVGIYAPLTNEGTIIVDDVFASCYALFP
SHSVSHAVFWVWRQIYPFLANSSEISSKTTQQTYHWYADFLRQSMNYLNI
FPYLL

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_001425	XLOC_001425	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00002634	TCONS_00002634	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR001657	Hedgehog
IPR003587	Hint_dom_N
IPR003586	Hint_dom_C
IPR000320	Hedgehog_signalling_dom
IPR009045	Hedgehog_sig/DD-Pept_Zn-bd_dom
IPR001767	Hint_dom
IPR006141	Intein_N
IPR028992	Hedgehog/Intein_dom

Vocabulary: **Biological Process**
Term	Definition
GO:0007275	multicellular organism development
GO:0007267	cell-cell signaling
GO:0006508	proteolysis
GO:0016539	intein-mediated protein splicing

Vocabulary: **Molecular Function**
Term	Definition
GO:0008233	peptidase activity

GO Annotation

GO Assignments

This polypeptide is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0007267	cell-cell signaling
biological_process	GO:0016539	intein-mediated protein splicing
biological_process	GO:0007275	multicellular organism development
biological_process	GO:0006508	proteolysis
molecular_function	GO:0008233	peptidase activity

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001657	Hedgehog protein	PRINTS	PR00632	SONICHHOG	coord: 135..157 score: 36.17 coord: 341..364 score: 41.1 coord: 274..284 score: 31.82 coord: 325..339 score: 59.09 coord: 383..399 score: 29.68
IPR003587	Hint domain N-terminal	SMART	SM00306	hint_7	coord: 205..303 e-value: 5.1E-18 score: 75.9
IPR003586	Hint domain C-terminal	SMART	SM00305	HINTC_6	coord: 306..351 e-value: 0.0064 score: 25.7
IPR000320	Hedgehog, N-terminal signalling domain	PFAM	PF01085	HH_signal	coord: 22..194 e-value: 9.4E-16 score: 57.8
None	No IPR available	GENE3D	2.170.16.10		coord: 207..347 e-value: 2.6E-23 score: 81.9
None	No IPR available	CDD	cd00081	Hint	coord: 207..345 e-value: 3.40204E-24 score: 95.4137
IPR009045	Hedgehog signalling/DD-peptidase zinc-binding domain	GENE3D	3.30.1380.10		coord: 38..202 e-value: 2.5E-20 score: 72.2
IPR009045	Hedgehog signalling/DD-peptidase zinc-binding domain	SUPERFAMILY	55166	Hedgehog/DD-peptidase	coord: 40..163
IPR001767	Hedgehog protein, Hint domain	PFAM	PF01079	Hint	coord: 202..395 e-value: 3.8E-46 score: 157.2
IPR006141	Intein N-terminal splicing region	PROSITE	PS50817	INTEIN_N_TER	coord: 207..282 score: 8.735
IPR028992	Hedgehog/Intein (Hint) domain	SUPERFAMILY	51294	Hedgehog/intein (Hint) domain	coord: 207..347

Blast

[Close]

BLAST of TCONS_00002634-protein vs. Swiss-Prot (Human)
Match: DHH (Desert hedgehog protein OS=Homo sapiens GN=DHH PE=1 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 1.356e-35
Identity = 112/393 (28.50%), Postives = 182/393 (46.31%), Query Frame = 0

Query:   21 ACGPGSGTSRGRLRDHN------IKGNRLPDVPEFSTAASGPFPGAKHRTDPGLVDIL---STDIVFKDKSYNANARKSIKTCHSSLKKLAGVVKRFWKNKYKVYVLEGYLPYGKKSLYKHGKHSLHYAGQAFDISLTNSPENTDDRLGEVVPEHTLRTLAGLAYYNAQFTFVQLK-KNHLHVSCDSTGH-EVSRGRCFSGESSVRTPS-KTIAMKDLKIGDSVLTMNPNGQPTFSEVTMMLHKDGTRYVEDFVNIETN-SGKSITLSPYHLIQTL--------ETGYVFSKDVKINQTLQTYDDSKNTFQLSQVRNISFDTAGVGIYAPLTNEGTIIVDDVFASCYALFPSHSVSHAVFWVWRQIYPFLANSSEISSKTTQQT-YHWYADFL 391
            +CGPG G   GR R         +    +P VPE +  ASGP  G   R      D++   + DI+FKD+  +   R   + C   +  LA  V   W    ++ V EG+   G      H + SLHY G+A DI+ ++   N    L  +  E             A F +V  + +NH+HVS  +     V  G CF G ++VR  S +   +++L  GD VL  + +G+   + V + L +D  R    FV +ET    + + L+P+HL+           +   VF++ ++   ++       +  + ++V  ++ + A VG++APLT  GT++V+DV ASCYA+  SH  +H  F   R ++   A  + +     Q T  HWY+  L
Sbjct:   22 SCGPGRGPV-GRRRYARKQLVPLLYKQFVPGVPERTLGASGPAEGRVARGSERFRDLVPNYNPDIIFKDEENSGADRLMTERCKERVNALAIAVMNMWPG-VRLRVTEGWDEDGH-----HAQDSLHYEGRALDITTSDRDRNKYGLLARLAVE-------------AGFDWVYYESRNHVHVSVKADNSLAVRAGGCFPGNATVRLWSGERKGLRELHRGDWVLAADASGRVVPTPVLLFLDRDLQRRAS-FVAVETEWPPRKLLLTPWHLVFAARGPAPAPGDFAPVFARRLRAGDSVLA--PGGDALRPARVARVAREEA-VGVFAPLTAHGTLLVNDVLASCYAVLESHQWAHRAFAPLRLLH---ALGALLPGGAVQPTGMHWYSRLL 387

The following BLAST results are available for this feature:

BLAST of TCONS_00002634-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00002634-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
DHH	1.356e-35	28.50	Desert hedgehog protein OS=Homo sapiens GN=DHH PE=...	[more]

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TCONS_00002634-protein (polypeptide) - C. hemisphaerica