TCONS_00002595-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00002595-protein
Unique NameTCONS_00002595-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length595

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00002595-protein ID=TCONS_00002595-protein|Name=TCONS_00002595-protein|organism=Clytia hemisphaerica|type=polypeptide|length=595bp
XPLLAYPDDEEEMEYDSDGNPIPPERSKIIVPLPPVDHDEMEYANFESNF
YEEHDDIKKLTRSQVEELRKSLGLKVSGSAPACPSVSFVHFGFDSHLMSV
IRRSEYSKPTPIQAQAVPVALSGRDIIGIAKTGSGKTAAFVWPMLVHCIA
QSELKSGDGPIAMICAPTRELCQQINSEVKRFGKCYNLQTVACYGGGSKW
EQTKALQQGCEIVVGTPGRLIDLIKGKATNLQRVTYLVFDEADRMFDMGF
EPQVRSIANNIRPDRQSLLFSATMKKKVEWLCRDILTDPVRIVVGELGEA
NEDVVQAVEVMYKQEQKWSWLLQHIVEFTSGGSVLIFVTKKTNSEELAKN
LKENGHQLGLIHGDFDQYERNDVLKRFKANAFSILVATDVAARGLDIPSI
KTVINYDVARDITTHTHRIGRTGRAGGKGIAYTLVTPQDNHFTADLVRNL
EGANQNVPPKLLELAMKNPWFRKIRSRRDRKASNKEFKPRDRPGLGMDDD
SGNTVGSIAEEEELLVGNTSGKRPSRSLLTSYSMSASAFGSNRLENLKSA
FKSGYTRFAKASDSNSSTMDSGDKDGKVETFDPNNQPKAMQQWGK
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_001411XLOC_001411Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00002595TCONS_00002595Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR014001Helicase_ATP-bd
IPR001650Helicase_C
IPR011545DEAD/DEAH_box_helicase_dom
IPR000629RNA-helicase_DEAD-box_CS
IPR014014RNA_helicase_DEAD_Q_motif
IPR027417P-loop_NTPase
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO:0005524ATP binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005524 ATP binding
molecular_function GO:0003676 nucleic acid binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR014001Helicase superfamily 1/2, ATP-binding domainSMARTSM00487ultradead3coord: 105..307
e-value: 7.5E-57
score: 204.9
IPR014001Helicase superfamily 1/2, ATP-binding domainPROSITEPS51192HELICASE_ATP_BIND_1coord: 117..292
score: 31.151
IPR001650Helicase, C-terminalSMARTSM00490helicmild6coord: 345..426
e-value: 9.5E-31
score: 118.2
IPR001650Helicase, C-terminalPFAMPF00271Helicase_Ccoord: 319..426
e-value: 2.2E-27
score: 95.5
IPR001650Helicase, C-terminalPROSITEPS51194HELICASE_CTERcoord: 320..465
score: 22.494
NoneNo IPR availableGENE3D3.40.50.300coord: 308..463
e-value: 7.6E-44
score: 148.7
NoneNo IPR availableGENE3D3.40.50.300coord: 37..307
e-value: 5.9E-61
score: 205.5
NoneNo IPR availableCDDcd00268DEADccoord: 88..292
e-value: 3.71187E-92
score: 283.607
NoneNo IPR availableCDDcd00079HELICccoord: 309..434
e-value: 3.88608E-36
score: 130.436
IPR011545DEAD/DEAH box helicase domainPFAMPF00270DEADcoord: 110..279
e-value: 1.4E-50
score: 171.4
IPR000629ATP-dependent RNA helicase DEAD-box, conserved sitePROSITEPS00039DEAD_ATP_HELICASEcoord: 238..246
IPR014014RNA helicase, DEAD-box type, Q motifPROSITEPS51195Q_MOTIFcoord: 86..114
score: 10.289
IPR027417P-loop containing nucleoside triphosphate hydrolaseSUPERFAMILY52540P-loop containing nucleoside triphosphate hydrolasescoord: 158..442

Blast
[Close]
BLAST of TCONS_00002595-protein vs. Swiss-Prot (Human)
Match: DDX42 (ATP-dependent RNA helicase DDX42 OS=Homo sapiens GN=DDX42 PE=1 SV=1)

HSP 1 Score: 711.064 bits (1834), Expect = 0.000e+0
Identity = 350/564 (62.06%), Postives = 425/564 (75.35%), Query Frame = 0 
Query:    8 DDEEEMEYDSDGNPIPPERSKIIVPLPPVDHDEMEYANFESNFYEEHDDIKKLTRSQVEELRKSLGLKVSGSAPACPSVSFVHFGFDSHLMSVIRRSEYSKPTPIQAQAVPVALSGRDIIGIAKTGSGKTAAFVWPMLVHCIAQSELKSGDGPIAMICAPTRELCQQINSEVKRFGKCYNLQTVACYGGGSKWEQTKALQQGCEIVVGTPGRLIDLIKGKATNLQRVTYLVFDEADRMFDMGFEPQVRSIANNIRPDRQSLLFSATMKKKVEWLCRDILTDPVRIVVGELGEANEDVVQAVEVMYKQEQKWSWLLQHIVEFTSGGSVLIFVTKKTNSEELAKNLKENGHQLGLIHGDFDQYERNDVLKRFKANAFSILVATDVAARGLDIPSIKTVINYDVARDITTHTHRIGRTGRAGGKGIAYTLVTPQDNHFTADLVRNLEGANQNVPPKLLELAMKNPWFRKIRSR----RDRKASNKEFKPRDRPGLGMDD-DSGNTVGSIAEEEELLVGNTSGKRPSRSLLTSYSMSASAFGSNRLENLKSAFKSGY-TRFAKASDSN 565
            ++E+ +EYDSDGNPI P + KII PLPP+DH E++Y  FE NFY EH++I  LT  Q+ +LR  L L+VSG+AP  P  SF HFGFD  LM  IR+SEY++PTPIQ Q VPVALSGRD+IGIAKTGSGKTAAF+WPML+H + Q EL+ GDGPIA+I  PTRELCQQI++E KRFGK YNL++VA YGGGS WEQ KALQ+G EIVV TPGRLID +K KATNLQRV+YLVFDEADRMFDMGFE QVRSIA+++RPDRQ+LLFSAT +KK+E L RDIL DP+R+V G++GEANEDV Q VE+++    KW+WL + +VEFTS GSVL+FVTKK N+EELA NLK+ GH LGL+HGD DQ ERN V+  FK     +LVATDVAARGLDIPSIKTVINYDVARDI THTHRIGRTGRAG KG+AYTL+TP+D++F  DLVRNLEGANQ+V  +LL+LAM+N WFRK R +    +           R+RPGLG ++ D GN           ++ N    +PS   +            +RL  +K+AF+S Y + F  AS SN
Sbjct:  176 EEEDNLEYDSDGNPIAPTK-KIIDPLPPIDHSEIDYPPFEKNFYNEHEEITNLTPQQLIDLRHKLNLRVSGAAPPRPGSSFAHFGFDEQLMHQIRKSEYTQPTPIQCQGVPVALSGRDMIGIAKTGSGKTAAFIWPMLIHIMDQKELEPGDGPIAVIVCPTRELCQQIHAECKRFGKAYNLRSVAVYGGGSMWEQAKALQEGAEIVVCTPGRLIDHVKKKATNLQRVSYLVFDEADRMFDMGFEYQVRSIASHVRPDRQTLLFSATFRKKIEKLARDILIDPIRVVQGDIGEANEDVTQIVEILHSGPSKWNWLTRRLVEFTSSGSVLLFVTKKANAEELANNLKQEGHNLGLLHGDMDQSERNKVISDFKKKDIPVLVATDVAARGLDIPSIKTVINYDVARDIDTHTHRIGRTGRAGEKGVAYTLLTPKDSNFAGDLVRNLEGANQHVSKELLDLAMQNAWFRKSRFKGGKGKKLNIGGGGLGYRERPGLGSENMDRGNNN---------VMSNYEAYKPSTGAM-----------GDRLTAMKAAFQSQYKSHFVAASLSN 718
The following BLAST results are available for this feature:
BLAST of TCONS_00002595-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
DDX420.000e+062.06ATP-dependent RNA helicase DDX42 OS=Homo sapiens G... [more]
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