TCONS_00002352-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00002352-protein
Unique NameTCONS_00002352-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length106

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00002352-protein ID=TCONS_00002352-protein|Name=TCONS_00002352-protein|organism=Clytia hemisphaerica|type=polypeptide|length=106bp
RHCLPDLMLMKYKNTCERFCFLHQRCLETMWQYIFLFSRQGKVRLQKWYN
TYTQKEKKKIMRDLLTIILARKPKMCSFLEYKDSKVCYKRYVKICSFYKH
FEGIDF
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_001240XLOC_001240Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00002352TCONS_00002352Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR016635AP_complex_ssu
IPR022775AP_mu_sigma_su
IPR011012Longin-like_dom
Vocabulary: Molecular Function
TermDefinition
GO:0008565protein transporter activity
Vocabulary: Biological Process
TermDefinition
GO:0015031protein transport
GO:0006810transport
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0015031 protein transport
biological_process GO:0006810 transport
molecular_function GO:0008565 protein transporter activity
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D3.30.450.60coord: 30..98
e-value: 4.8E-16
score: 58.5
IPR016635Adaptor protein complex, sigma subunitPIRSFPIRSF015588AP_complex_sigmacoord: 30..102
e-value: 5.7E-22
score: 76.1
IPR022775AP complex, mu/sigma subunitPFAMPF01217Clat_adaptor_scoord: 30..94
e-value: 1.4E-18
score: 67.1
IPR011012Longin-like domainSUPERFAMILY64356SNARE-likecoord: 30..94

Blast
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BLAST of TCONS_00002352-protein vs. Swiss-Prot (Human)
Match: AP1S1 (AP-1 complex subunit sigma-1A OS=Homo sapiens GN=AP1S1 PE=1 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 5.148e-24
Identity = 39/65 (60.00%), Postives = 54/65 (83.08%), Query Frame = 0 
Query:   30 MWQYIFLFSRQGKVRLQKWYNTYTQKEKKKIMRDLLTIILARKPKMCSFLEYKDSKVCYKRYVKI 94
            M +++ LFSRQGK+RLQKWY   + KE+KK++R+L+ ++LARKPKMCSFLE++D KV YKRY  +
Sbjct:    1 MMRFMLLFSRQGKLRLQKWYLATSDKERKKMVRELMQVVLARKPKMCSFLEWRDLKVVYKRYASL 65
The following BLAST results are available for this feature:
BLAST of TCONS_00002352-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
AP1S15.148e-2460.00AP-1 complex subunit sigma-1A OS=Homo sapiens GN=A... [more]
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