TCONS_00002137-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00002137-protein
Unique Name	TCONS_00002137-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	354

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00002137-protein ID=TCONS_00002137-protein|Name=TCONS_00002137-protein|organism=Clytia hemisphaerica|type=polypeptide|length=354bp
MVGASFRREFHMAFLLGLSFGFFIAVIFRELQSSFSETKDLVNKGPPSGR
AMEEDYAMLLSEEYEGKHLPPPSKPQPVDKPIIFNDLDSIHHKGGDRVAK
LLSKKVRILCWIMTQPKTLKTKAQAVKNTWGKRCNTLLFMSSKGDKDFPV
VGLNVPEGRKNLWLKTRAAWKYIYEHHFYDADWFLKADDDSFVVLENLRY
FLSKHNSSQTHYFGRHFRPFGGYNSGGAGYVFSKATLIVFNQVLRDPSVC
KLKAGAEDAEVGVCLRMMGVVPGDTRDEFGRESFHPFAPDYHLVPNGIPT
TNWLHKYNKHPVKSGPGCCSDHSIAFHYIPPNRMYVMEYFIYHLRPFGVH
HVHN

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_001114	XLOC_001114	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00002137	TCONS_00002137	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR003378	Fringe-like

Vocabulary: **Cellular Component**
Term	Definition
GO:0016020	membrane

Vocabulary: **Molecular Function**
Term	Definition
GO:0016757	transferase activity, transferring glycosyl groups

GO Annotation

GO Assignments

This polypeptide is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016020	membrane
molecular_function	GO:0016757	transferase activity, transferring glycosyl groups

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR003378	Fringe-like	PFAM	PF02434	Fringe	coord: 113..217 e-value: 5.7E-6 score: 25.8

Blast

[Close]

BLAST of TCONS_00002137-protein vs. Swiss-Prot (Human)
Match: C1GLT (Glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase 1 OS=Homo sapiens GN=C1GALT1 PE=1 SV=1)

HSP 1 Score: 286.189 bits (731), Expect = 1.243e-94
Identity = 146/340 (42.94%), Postives = 204/340 (60.00%), Query Frame = 0

Query:   12 MAFLLGLSFGFFI-AVIFRELQSSFSETKDLVNKGPPSGRAMEEDYAMLLSEEYEGKHLPPPSKPQPVDKPIIFNDLDSIHHKGGDRVAKLLSKKVRILCWIMTQPKTLKTKAQAVKNTWGKRCNTLLFMSSKGDKDFPVVGLNVPEGRKNLWLKTRAAWKYIYEHHFYDADWFLKADDDSFVVLENLRYFLSKHNSSQTHYFGRHFRPF--GGYNSGGAGYVFSKATLIVFNQVLRDPSVCKLKAGAEDAEVGVCLRMMGVVPGDTRDEFGRESFHPFAPDYHLVPNGIPTTNWLHKYNKHPVKSGPGCCSDHSIAFHYIPPNRMYVMEYFIYHLRPFG 348
            + FL G + GF + + +F  L     +T+  V    P  R          S++    HL         +  + FN   S H      +A+ L +KVRILCW+MT P+ L+ KA+ VK TW +RCN +LFMSS+ +KDFP VGL   EGR  L+ KT  A++Y++EH+  DADWFLKADDD++V+L+NLR+ LSK++  +  YFGR F+P+   GY SGGAGYV SK  L  F    +    C   +  ED  +G C+ +M V  GD+RD  G+E+FHPF P++HL+   +P T W   YN +P   GPGCCSD +++FHY+    MY +EY +YHLRP+G
Sbjct:   10 LTFLCGSAIGFLLCSQLFSILLGEKVDTQPNVLHNDPHARH---------SDDNGQNHL---------EGQMNFNADSSQHKDENTDIAENLYQKVRILCWVMTGPQNLEKKAKHVKATWAQRCNKVLFMSSEENKDFPAVGLKTKEGRDQLYWKTIKAFQYVHEHYLEDADWFLKADDDTYVILDNLRWLLSKYDPEEPIYFGRRFKPYVKQGYMSGGAGYVLSKEALKRFVDAFKTDK-CTHSSSIEDLALGRCMEIMNVEAGDSRDTIGKETFHPFVPEHHLIKGYLPRTFWYWNYNYYPPVEGPGCCSDLAVSFHYVDSTTMYELEYLVYHLRPYG 330

The following BLAST results are available for this feature:

BLAST of TCONS_00002137-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00002137-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
C1GLT	1.243e-94	42.94	Glycoprotein-N-acetylgalactosamine 3-beta-galactos...	[more]

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TCONS_00002137-protein (polypeptide) - C. hemisphaerica