TCONS_00002037-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00002037-protein
Unique NameTCONS_00002037-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length424

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00002037-protein ID=TCONS_00002037-protein|Name=TCONS_00002037-protein|organism=Clytia hemisphaerica|type=polypeptide|length=424bp
MMDSLKPFTTDSITDVDQGGYDVDLEDKLDLPPDLKCTICWKLMKDPMQF
PCGHGTCNYCLQSLAKSSSSKSRPLCPQCRSPIPIKKALKNVMLKRFIEA
LRVKCMNSWRGCTWVGEVSNIKDHSCDYEMTKCTNAGCGAEIEKKSLPDH
LLKCNVKAAETDELNQKVKDQSKEIIDLKTQLTDYETLKKDHQNLQTEQQ
NLQNFNQFLQARIDVLETEQKKRDRRITNSPITIEDTEKKPFVTLEDLEC
IVISDDDEKNGLPDCENALPHSVHSTNTDANVDSHTLHSPNAIPESPERL
STPFADIESIISRTTFNRTDSGNSFTYSTAGPSSSNDVNGLPYSSQYFNN
LSVSSPLHMNNRPRTPQSLYENNNDSGNSFTQSSNLPHSSSFFNPFSYQN
SIDTGSTSRIFSPYDFSNIGANFQ
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_001072XLOC_001072Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00002037TCONS_00002037Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001841Znf_RING
IPR013083Znf_RING/FYVE/PHD
IPR008974TRAF-like
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 161..219
NoneNo IPR availableGENE3D1.20.5.400coord: 155..228
e-value: 0.0012
score: 18.2
NoneNo IPR availablePFAMPF13920zf-C3HC4_3coord: 34..83
e-value: 1.5E-8
score: 34.2
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 354..384
NoneNo IPR availableSUPERFAMILY57850RING/U-boxcoord: 30..105
IPR001841Zinc finger, RING-typeSMARTSM00184ring_2coord: 37..79
e-value: 7.3E-6
score: 35.5
IPR001841Zinc finger, RING-typePROSITEPS50089ZF_RING_2coord: 37..80
score: 11.87
IPR001841Zinc finger, RING-typeCDDcd00162RINGcoord: 36..83
e-value: 4.31468E-6
score: 42.818
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3D3.30.40.10coord: 98..151
e-value: 2.6E-13
score: 49.5
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3D3.30.40.10coord: 22..97
e-value: 1.0E-14
score: 53.3
IPR008974TRAF-likeSUPERFAMILY49599TRAF domain-likecoord: 100..158

Blast
[Close]
BLAST of TCONS_00002037-protein vs. Swiss-Prot (Human)
Match: PZRN3 (E3 ubiquitin-protein ligase PDZRN3 OS=Homo sapiens GN=PDZRN3 PE=1 SV=2)

HSP 1 Score: 88.1965 bits (217), Expect = 1.296e-18
Identity = 65/210 (30.95%), Postives = 98/210 (46.67%), Query Frame = 0 
Query:   20 GYDVDLEDKLDLPPDLKCTICWKLMKDPMQFPCGHGTCNYCLQSLAKSSSSKSRPLCP-QCRSPIPIKKALKNVMLKRFIEALRVKCMNSWRGCTWVGEVSNIKDH--SCDYEMTKCTNAGCGAEIEKKSLPDHLLKCNVKAAETDELNQKVKDQSKEIIDLKTQLTDYETLKKDHQNLQTEQQNLQNFNQFLQARIDVLETEQKKRDRR 226
            G+++D  D  D+ PDLKC +C K+++DP+  PCGH  C  C+        S     CP +CR  +  K+    + LKR I  L +KC  + RGC  V ++  + +H   CD+   +C +AGCG           LL+ +V+A   D  + +   + +E   L   LT  E     H   +     L+  N  LQAR+  L    KK   R
Sbjct:    2 GFELDRFDG-DVDPDLKCALCHKVLEDPLTTPCGHVFCAGCVLPWVVQEGS-----CPARCRGRLSAKELNHVLPLKRLILKLDIKCAYATRGCGRVVKLQQLPEHLERCDFAPARCRHAGCGQV---------LLRRDVEAHMRDACDARPVGRCQEGCGLP--LTHGEQRAGGHCCARA----LRAHNGALQARLGALHKALKKEALR 190
The following BLAST results are available for this feature:
BLAST of TCONS_00002037-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
PZRN31.296e-1830.95E3 ubiquitin-protein ligase PDZRN3 OS=Homo sapiens... [more]
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