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TCONS_00002037 (transcript) - C. hemisphaerica

Overview
NameTCONS_00002037
Unique NameTCONS_00002037
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length5263

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00002037 ID=TCONS_00002037|Name=TCONS_00002037|organism=Clytia hemisphaerica|type=transcript|length=5263bp
actttgaaccttgaattgttcttatttttatttgttcttattttttctaa
ggtaaaaaacaagttttggctatttacttcactatttagaggattttaga
aactagtgattctttttgctataactactactttttaaaatactttcagc
ctctccactgttcttaaattgttcttatttttggcatttttgagcctagt
tgttcttataaaatttttcttataaaaaaaaagtgtatacaCGTCTCTGC
TGAAGGTTGTTTTACGGTTGTTTTACTTTTACTCTTCCTTATGTGCGGCA
AGTTATTGTTCTATCTCATGTTTATTTTCTTATGCAGAAATAAAttctaa
agaaataaaataagaaatagCATTAAAGCATTTATAACAGCTGAATAAAA
TCATGTCCGCTCATGGTGACGGGGCTGCTACTGCTGAAAGTGTTCAAAGT
AATGCTGAAAGTGACTTACAATCTCTCATACGTACATTCCAAAGCGAAGT
GAAAACGACTGACTGGTTGAAAGAGAATACAGCTGAGAGATGGGAAAAAG
AAAATCCAGAATTGGCGACTGAATATAAGAATGCTATCAAAAGTCAGAAA
CCATCAAAAGAACAGTCAAAGACTGAAAGTGGTGATGAGAAAAATCCTGG
AAGTTAACTGAACTGACAGAAGgagaaaaagtcaagaaaattcCCAAGTG
ACTTTGTTTgcaaggtgacgggtatgttcgagtcgaaaatcaaccctttg
agagaatttttgtcaaaactttGAACGATTTCTCCAGAAAATCATGACCT
TTCGCTTGAGAAGGAAGTTTTAGTCGTTCGTTTTTCAGAGACTAACCTAT
GATTTTGTACCCTTTGAGGAGCCTTTTAGGGCTTGAAAAATGGTAATCTT
AtggcacatacccgtcacctgTTTTGCCTCAGTACAAAAGGCACAGCCAA
AAGCTGTAATCTTTCCATGATTCGCAACgaaaagctgaaattttaaaatt
tgttgCATTACATTGCATTAAACCAAAAAGTCACGGtaaatttgttgaat
ttttcctctcttttcagattttaaaagttgactttttttaaatgtgtATA
AAAAGatagtttatttattttgaatttatcaTGATTTTAGGTCATTATTA
GAGTTTCAAGATTTATAGTTCTGAGAAAGAAACTACTATACTGTTCTGGC
GgtattcaaaattttccttgtatGGTTGAAGTGGcctttttttgctgaaa
tttacaGAATCTAGACATCAGTTTGTATGCAATCTTTCCAAGAAAATAAG
TGACCGAAAACTTTTGTAAGTAAAATCAGCCTGTTTGTTTCGAAATGTCC
CCGATGCATCAAAACGTGTTTAAGATTCCGTCTCTTCCTTACTTTGCAGT
GATCATTTAAAAGTTGACAATATCAGATTTCTATAGCCATTCTCCACGAA
GTTAGCCTAACAAGAAGGCTTTAACAtagcctggttaaccaagcTTATTT
TTCAAGCCCAAGATACGGCTGACGGCAATATAGCGTTATCGgcgctttaa
tgattttttatgatgcACGGAATTTTAAGATGGTCTTGAAAAACTgtata
ttcagtcacaacttaccatcagattttaccaagtgactgaatcaatgtgg
cttagatttctaggctagccTTAACAAGGATATATCTTATAAAGGATATA
ATATCCCTTCATTTCTTATGGTATTTTGCCTTGCGAGGTGACGACAGGAA
ATAAGTATGTCCTGACAGGCTCTTTAAATAACCTCATCTTCCACCCTATT
GATTTTGTTCTTTCCGACACCTTGCCTAATTTTTGATCAATTGGGATTTT
CCCAATGCCTCAAGTTCCTCATGTCGAAACGTCTATAAACATAAATCACT
GTTATAGCTGTGCGTCAGTCATCCCTTTTTGTAAGAAAATAATTAAGCTC
TAATTTTACTACATAATAGTCCACATAATTGATCTATATAGAATATAGAA
TTAGATGCTAAAACATACTTTTTTCCTTATATCTATTTAAGTACTTTTAA
TAATGCTTAATCTCATACATACTATTAtgcttttttgataaaataccTCA
GATTTTTTGCGTAGTTAAAAACGTCAGTGCTTAAACATGTACGTACTGAG
CTATAACAGATCTCTAAAAAATTGCTTGAAGGTAATGTGAAGTTTTGTAA
TGTTCTTATAGAACAAAGCTACAATTTTCTCTTGACATTTCATAGTAAGA
GGAATATTTTGTCTTGCATGTTGTTTTATgataagcaaaaaatagttgTT
CTAGCAgggttttttgttaaaaaagtcaaaaaaaacaaattcttgTAACG
ACAATTTATCACTTTTTCCAACCTATGATTTtgagtttcttataggaagt
ctTCCTCTTTGAGCTTTGTTATTTTATTTGGGATGGCTTTTCTTAAAGCA
AATATGGCGCAATCAGATACTAAGTCAATTTAAAAACATCTTATATTTGA
TATCACTCAATATTATGTCAGGTATGTTACTCAAATTACACCTCAGTTAC
ACCACCATCATTGGTGCTTCTTGAAGAATGTTGAATAGTACAGCTTTTAA
AACctttgtccatttttttttataagaacaaattatattaGAATGTGAGG
CTTCGAAGGCcaatatgttaagaacaagttaagaacatccaaaggcttca
aaaattttggattttcttataaaaaaaacctgtatggttttttttttgtc
tgtATTGCCattgtaaataaaaaatgtttgtcaATCGTAAATTTAGAATA
AGATGAcagactttttttattcttagaAAGGAAAGCCGCATAATTtatgt
caaaaaaataaattaatttcaattGTGTCGTCACGTATAAGGAGTATATA
AATAAAGACAAGGAAACGCACTTTTTAGTATGCATCATGTGCTTGCTCTA
TTAAGATCACAAATTCTTGATCTGTGACTTGACTGTGTGTGATCAAACAA
CACAATTTTGATTATCCTTGTGTTGTGAGGTGTGTTTCCAGTACTAAAGA
TTCATGATCTGATATTATTAACGATCAAAACATACATACATGATATTAGT
GTTCAACGACATAATTTTAATCAAAGAACAGCAAAAAAGTTCTAATCATc
aatcattttgcttggctggttTCCAGTTTTAACAAACGTCAATCGattca
aatacaaaaaacttttgttgtgtgAACGACGAGAGCATATTTGATTGCTA
TTTTCTTCAACTCAGCGTGGAAAATAGGGAAGTGTaaaattattctgagc
tgcTGGTTGCATGTTGGCATCGTGAACTCATATCGGTATCAAACTTTTTC
GTCGATATCTCTGTCACTGCTTAAACTTGAATATCGGACAGTAGCATTTT
TTGACCATTGTACAGACGTTATACTAAGAAGTAATTGTTGTCATATCAAC
CGATTGGGATTCTTGTGGAGTAAAAAAGTTCCTTTAACGTTGGAATACTG
AAAATTTCACTATAACTGGTAGCAATACTTGGTGCGTAACTAGTTATAAA
GGAGTCCGACGAGACACAGCTGTAAAATCGTGAACGAAGAACATAAGTAA
ATATACTGCTGAACTTTTCATCAAAGGTCCAGGGGAATTCTATTATCAAT
TATAAGTTTTCTGAATCcaattttatttgtttcttGTGGCTTTTATCGCG
AACTGGAAATTGACCATGACGTGTCTCTAATGAGATATAAGTCGTTCTCA
AGTTGAATGATGGATTCTTTGAAACCCTTCACCACAGACAGTATAACAGA
CGTTGACCAAGGAGGTTATGATGTTGACCTGGAAGATAAACTTGACTTAC
CACCTGATTTGAAATGTACCATTTGTTGGAAATTGATGAAAGATCCAATG
CAATTCCCTTGTGGTCATGGTACTTGTAATTATTGTCTACAATCGCTGGC
TAAAAGCAGCTCATCAAAAAGTCGACCGCTGTGTCCACAATGTAGAAGTC
CGATACCAATCAAAAAAgCACTGAAAAACGTAATGTTGAAGCGATTCATC
GAAGCACTTCGTGTCAAATGTATGAACTCTTGGCGAGGGTGTACTTGGGT
CGGAGAAGTCAGCAACATTAAGGATCATTCGTGTGATTATGAAATGACGA
AATGTACAAATGCTGGTTGTGGTGCAGAAATCGAAAAGAAATCTTTACCG
GATCATCTGTTAAAATGCAATgtaaAAGCAGCCGAAACAGATGAACTAAA
TCAGAAAGTCAAAGATCAATCTAAAGAGATTATAGATCTCAAAACGCAAT
TAACAGATTacgaaacattaaaaaaagatcatcaaaatctacagacagaa
caacaaaacttacaaaattttaatcaatttctgCAAGCCAGAATAGATGT
ACTGGAGACGGAGCAAAAGAAACGAGACAGGAGAATAACAAACTCACCTA
TTACTATAGAAGATACTGAAAAGAAACCCTTCGTGACGCTGGAAGATTTA
GAGTGTATTGTTATCAGTGACGACGATGAGAAAAATGGTTTACCAGATTG
TGAAAATGCTCTACCACATTCCGTGCACTCTACAAACACTGATGCAAACG
TTGACTCACATACCTTACACTCACCAAATGCTATTCCAGAGTCTCCAGAA
AGGTTATCTACACCTTTTGCTGATATTGAAAGTATTATATCACGAACCAC
TTTCAACCGTACTGATAGTGGTAATAGCTTTACATATTCAACGGCTGGCC
CGTCTTCTTCGAATGATGTAAACGGGCTACCATATTCTTCACAGTATTTC
AACAATCTTTCAGTCTCTTCTCCTCTTCATATGAACAATCGTCCACGTAC
ACCGCAGTCACTGTATGAAAATAATAATGATAGTGGTAATAGCTTTACAC
AATCATCaaatttaccacattcttcatcatttttcaaTCCATTCTCGTAT
CAAAATAGTATTGACACTGGTTCAACGTCTCGTATTTTTTCTCCATACGA
TTTCAGTAATATTGGTgctaattttcaataattttcacgTGGATTCTTTA
ttgattttcactaaaaacatCATGACCATCAAATGGTCAATGATAGCTAT
TCTTGTGTTTTTAAAAGCATTGTATTATAACacgtttatatttttttgta
aatatttatattaaaaCGATAGTAAAAAACTAACAGATCTTCTTTATTCG
GTTAATAAAACATGTGGATCGCGCCCGTCATCAGTTTTATGATACCCATC
ATAGTCCTTCTCT
Run BLAST on NCBI

protein sequence of TCONS_00002037-protein

>TCONS_00002037-protein ID=TCONS_00002037-protein|Name=TCONS_00002037-protein|organism=Clytia hemisphaerica|type=polypeptide|length=424bp
MMDSLKPFTTDSITDVDQGGYDVDLEDKLDLPPDLKCTICWKLMKDPMQF
PCGHGTCNYCLQSLAKSSSSKSRPLCPQCRSPIPIKKALKNVMLKRFIEA
LRVKCMNSWRGCTWVGEVSNIKDHSCDYEMTKCTNAGCGAEIEKKSLPDH
LLKCNVKAAETDELNQKVKDQSKEIIDLKTQLTDYETLKKDHQNLQTEQQ
NLQNFNQFLQARIDVLETEQKKRDRRITNSPITIEDTEKKPFVTLEDLEC
IVISDDDEKNGLPDCENALPHSVHSTNTDANVDSHTLHSPNAIPESPERL
STPFADIESIISRTTFNRTDSGNSFTYSTAGPSSSNDVNGLPYSSQYFNN
LSVSSPLHMNNRPRTPQSLYENNNDSGNSFTQSSNLPHSSSFFNPFSYQN
SIDTGSTSRIFSPYDFSNIGANFQ
Run BLAST on NCBI

transcript from alignment at sc0000018:406111..415142+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00002037 ID=TCONS_00002037|Name=TCONS_00002037|organism=Clytia hemisphaerica|type=transcript|length=9032bp|location=Sequence derived from alignment at sc0000018:406111..415142+ (Clytia hemisphaerica)
actttgaaccttgaattgttcttatttttatttgttcttattttttctaa ggtaaaaaacaagttttggctatttacttcactatttagaggattttaga aactagtgattctttttgctataactactactttttaaaatactttcagc ctctccactgttcttaaattgttcttatttttggcatttttgagcctagt tgttcttataaaatttttcttataaaaaaaaagtgtatacaCGTCTCTGC TGAAGGTTGTTTTACGGTTGTTTTACTTTTACTCTTCCTTATGTGCGGCA AGTTATTGTTCTATCTCATGTTTATTTTCTTATGCAGAAATAAAttctaa agaaataaaataagaaatagCATTAAAGCATTTATAACAGCTGAATAAAA TCATGTCCGCTCATGGTGACGGGGCTGCTACTGCTGAAAGTGTTCAAAGT AATGCTGAAAGTGACTTACAATCTCTCATACGTACATTCCAAAGCGAAGT GAAAACGACTGACTGGTTGAAAGAGAATACAGCTGAGAGATGGGAAAAAG AAAATCCAGAATTGGCGACTGAATATAAGAATGCTATCAAAAGTCAGAAA CCATCAAAAGAACAGTCAAAGACTGAAAGTGGTGATGAGAAAAATCCTGG AAGTTAACTGAACTGACAGAAGgagaaaaagtcaagaaaattcCCAAGTG ACTTTGTTTgcaaggtgacgggtatgttcgagtcgaaaatcaaccctttg agagaatttttgtcaaaactttGAACGATTTCTCCAGAAAATCATGACCT TTCGCTTGAGAAGGAAGTTTTAGTCGTTCGTTTTTCAGAGACTAACCTAT GATTTTGTACCCTTTGAGGAGCCTTTTAGGGCTTGAAAAATGGTAATCTT AtggcacatacccgtcacctgTTTTGCCTCAGTACAAAAGGCACAGCCAA AAGCTGTAATCTTTCCATGATTCGCAACgaaaagctgaaattttaaaatt tgttgCATTACATTGCATTAAACCAAAAAGTCACGGtaaatttgttgaat ttttcctctcttttcagattttaaaagttgactttttttaaatgtgtATA AAAAGatagtttatttattttgaatttatcaTGATTTTAGGTCATTATTA GAGTTTCAAGATTTATAGTTCTGAGAAAGAAACTACTATACTGTTCTGGC GgtattcaaaattttccttgtatGGTTGAAGTGGcctttttttgctgaaa tttacaGAATCTAGACATCAGTTTGTATGCAATCTTTCCAAGAAAATAAG TGACCGAAAACTTTTGTAAGTAAAATCAGCCTGTTTGTTTCGAAATGTCC CCGATGCATCAAAACGTGTTTAAGATTCCGTCTCTTCCTTACTTTGCAGT GATCATTTAAAAGTTGACAATATCAGATTTCTATAGCCATTCTCCACGAA GTTAGCCTAACAAGAAGGCTTTAACAtagcctggttaaccaagcTTATTT TTCAAGCCCAAGATACGGCTGACGGCAATATAGCGTTATCGgcgctttaa tgattttttatgatgcACGGAATTTTAAGATGGTCTTGAAAAACTgtata ttcagtcacaacttaccatcagattttaccaagtgactgaatcaatgtgg cttagatttctaggctagccTTAACAAGGATATATCTTATAAAGGATATA ATATCCCTTCATTTCTTATGGTATTTTGCCTTGCGAGGTGACGACAGGAA ATAAGTATGTCCTGACAGGCTCTTTAAATAACCTCATCTTCCACCCTATT GATTTTGTTCTTTCCGACACCTTGCCTAATTTTTGATCAATTGGGATTTT CCCAATGCCTCAAGTTCCTCATGTCGAAACGTCTATAAACATAAATCACT GTTATAGCTGTGCGTCAGTCATCCCTTTTTGTAAGAAAATAATTAAGCTC TAATTTTACTACATAATAGTCCACATAATTGATCTATATAGAATATAGAA TTAGATGCTAAAACATACTTTTTTCCTTATATCTATTTAAGTACTTTTAA TAATGCTTAATCTCATACATACTATTAtgcttttttgataaaataccTCA GATTTTTTGCGTAGTTAAAAACGTCAGTGCTTAAACATGTACGTACTGAG CTATAACAGATCTCTAAAAAATTGCTTGAAGGTAATGTGAAGTTTTGTAA TGTTCTTATAGAACAAAGCTACAATTTTCTCTTGACATTTCATAGTAAGA GGAATATTTTGTCTTGCATGTTGTTTTATgataagcaaaaaatagttgTT CTAGCAgggttttttgttaaaaaagtcaaaaaaaacaaattcttgTAACG ACAATTTATCACTTTTTCCAACCTATGATTTtgagtttcttataggaagt ctTCCTCTTTGAGCTTTGTTATTTTATTTGGGATGGCTTTTCTTAAAGCA AATATGGCGCAATCAGATACTAAGTCAATTTAAAAACATCTTATATTTGA TATCACTCAATATTATGTCAGGTATGTTACTCAAATTACACCTCAGTTAC ACCACCATCATTGGTGCTTCTTGAAGAATGTTGAATAGTACAGCTTTTAA AACctttgtccatttttttttataagaacaaattatattaGAATGTGAGG CTTCGAAGGCcaatatgttaagaacaagttaagaacatccaaaggcttca aaaattttggattttcttataaaaaaaacctgtatggttttttttttgtc tgtATTGCCattgtaaataaaaaatgtttgtcaATCGTAAATTTAGAATA AGATGAcagactttttttattcttagaAAGGAAAGCCGCATAATTtatgt caaaaaaataaattaatttcaattGTGTCGTCACGTATAAGGAGTATATA AATAAAGACAAGGAAACGCACTTTTTAGTATGCATCATGTGCTTGCTCTA TTAAGATCACAAATTCTTGATCTGTGACTTGACTGTGTGTGATCAAACAA CACAATTTTGATTATCCTTGTGTTGTGAGGTGTGTTTCCAGTACTAAAGA TTCATGATCTGATATTATTAACGATCAAAACATACATACATGATATTAGT GTTCAACGACATAATTTTAATCAAAGAACAGCAAAAAAGTTCTAATCATc aatcattttgcttggctggttTCCAGTTTTAACAAACGTCAATCGattca aatacaaaaaacttttgttgtgtgAACGACGAGAGCATATTTGATTGCTA TTTTCTTCAACTCAGCGTGGAAAATAGGGAAGTGTaaaattattctgagc tgcTGGTTGCATGTTGGCATCGTGAACTCATATCGGTATCAAACTTTTTC GTCGATATCTCTGTCACTGCTTAAACTTGAATATCGGACAGTAGCATTTT TTGACCATTGTACAGACGTTATACTAAGAAGTAATTGTTGTCATATCAAC CGATTGGGATTCTTGTGGAGTAAAAAAGTTCCTTTAACGTTGGAATACTG AAAATTTCACTATAACTGGTAGCAATACTTGGTGCGTAACTAGTTATAAA GGAGTCCGACGAGACACAGCTGTAAAATCGTGAACGAAGAACATAAGTAA ATATACTGCTGAACTTTTCATCAAAGGTCCAGGGGAATTCTATTATCAAT TATAAGTTTTCTGAATCcaattttatttgtttcttGTGGCTTTTATCGCG AACTGGAAATTGACCATGACGTGTCTCTAATGAGATATAAGTCGTTCTCA AGTTGAATGATGGATTCTTTGAAACCCTTCACCACAGACAGTATAACAGA CGTTGACCAAGGAGGTTATGATGTTGACCTGGAAGATAAACTTGACTTAC CACCTGATTTGAAATGTACCATTTGTTGGAAATTGATGAAAGATCCAATG CAATTCCCTTGTGGTCATGGTACTTGTAATTATTGTCTACAATCGCTGGC TAAAAGCAGGTGGGTGGCTGATACCTTTGAAAGTTGCATTTTCAGTAATT TCCGAACTTTCATATCTTGTATTATTATGGAATCTTTGCGATTTGCTATG GAATCTTTAAAACTTGACATGTTGTTATGCCTGTTGTAATCTTTTCAAGA GTTCATTATTCTTTGCCTTCAGAATCTAATCCGAACGTTTATCCTCGATC ACGTAGGCGTGTTAGAGGTTTGAGAGGTCTTTTTACTGTTGACGTCTTAT AAATCTTGTCAACAAATATCGAGCGCAAAATTTGAAGTGCAAAATAAAGT TTCGACAACTCTTTTGCTAGTGAAACTGGGAAGTTCAATTTGTTTATCAT TAGTCAAACATTGACAAAAAAGGTATCAAATAATTTCCTGTTCGTTTATT TTTAGCTCATCAAAAAGTCGACCGCTGTGTCCACAATGTAGAAGTCCGAT ACCAATCAAAAAAGTGAGTAAATATTTCACATGaagggtttttttttcaa cctagCAAGTTTTGATTTTCACTGACTTCaaatattatgaaaatattCTG TTTTTTTACACTGGCCTTGAATATTAccaaatacagttgactctcgctta ttcgaaggGGCATccaatttgttcgaattacagggaGGTTAGTATTAGAG GGGTTTTATGAAAGGGTTTTTACTTTGAAGGGTGGGACAAGGAATGTtgt ttttggttgaaatttaaaaatttgaatatggggggggggcggaggatata aatttttttataaatttaccccccccccNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNTGAATTTTGACCCCCGGAAATC AGGTCTAACCCCTCCCCCctcccggacaagcatcagttgaccctcTGGAT ATTAAATATTACCCTCAAACGGAGCAAAATCACCCGAAAACAGAGCAAGT TTTTAACCCCCcgaacaaggcaaattttgtagatttttttacTACCACAG GACATTATATCCTCCACTCCACCCCCCACCTCCCATGTACgaatattttc tggaagagcccattttagaaagatttgaatCGTTTGTTCGAATATGCGAG AGTCAATCTTTACGGGTTGCTTTAAGAATTCCAGTTTAAATATTACTatc aatttcgtttttttctaggCACTGAAAAACGTAATGTTGAAGCGATTCAT CGAAGCACTTCGTGTCAAATGTATGAACTCTTGGCGAGGGTGTACTTGGG TCGGAGAAGTCAGCAACATTAAGGTTGGTTAAAATGAAATAACGTGGCAA TGATAATGTCTGAAGTGTGaggaaattcaaaattctaTCATTTTAGTACT TTCTACTTAGTTTATCCATACGTAATCCTTAAATCAATTTAAAGTATATT TTGGGAAATTTCTTCATAAGTTTTTTATAAAAGGTAGTATCAATCACAAG TAAGATATCGGCCCTGGAAAATCAAGGTGTATAATGGAATTTTCATGATA AAGTCTATTGGTAATAGACGAAATTCCAGAGATGGGTCTTGTaaactttg aaatgaaaatcCAAGGGGGTACCCCCTTCTACCCCATCTAAAACTTCAAG ACAACTTGCTAAAATGTAAGCAGAAGACGTCCGTCCCATCCAAAATTGAC CTCTTTAACATTGGGAGTATAACAATTATATATTTCTTCTGCTGTAGGAT CATTCGTGTGATTATGAAATGACGAAATGTACAAATGCTGGTTGTGGTGC AGAAATCGAAAAGAAATCTTTACCGGATCATCTGTTAAAATGCAATGTGA GTATATATGTTTCCTTTTACTTCTTGATAACGAGGTCATTTTTGTGGTTT GTTGATATGTCTTGTTACTGTCCTTTGGATAAAACTGTAAAATGTCGTAG ATCTGGTATGGGTAACCTATAGAAATAGACTAAACCAATGAAATCGCATG TAGGAATATATCAAGATAGTCGAGGCTGTCAATTCGTTTTTGCTTAATGA AATATCTTATATTATAGGTAAAAGCCGAGGCCAGCAATTCAAATTATCTT ataaagtcttatttttattttgtaggtaaAAGCAGCCGAAACAGATGAAC TAAATCAGAAAGTCAAAGATCAATCTAAAGAGATTATAGATCTCAAAACG CAATTAACAGATTacgaaacattaaaaaaagatcatcaaaatctacagac agaacaacaaaacttacaaaattttaatcaatttctgCAAGCCAGAATAG ATGTACTGGAGACGGAGCAAAAGAAACGAGACAGGAGAATAACAAACTCA CCTATTACTATAGAAGATACTGAAAAGAAACCCTTCGTGACGCTGGAAGA TTTAGAGTGTATTGTTATCAGTGACGACGATGAGAAAAATGGTTTACCAG ATTGTGAAAATGCTCTACCACATTCCGTGCACTCTACAAACACTGATGCA AACGTTGACTCACATACCTTACACTCACCAAATGCTATTCCAGAGTCTCC AGAAAGGTTATCTACACCTTTTGCTGATATTGAAAGTATTATATCACGAA CCACTTTCAACCGTACTGATAGTGGTAATAGCTTTACATATTCAACGGCT GGCCCGTCTTCTTCGAATGATGTAAACGGGCTACCATATTCTTCACAGTA TTTCAACAATCTTTCAGTCTCTTCTCCTCTTCATATGAACAATCGTCCAC GTACACCGCAGTCACTGTATGAAAATAATAATGATAGTGGTAATAGCTTT ACACAATCATCaaatttaccacattcttcatcatttttcaaTCCATTCTC GTATCAAAATAGTATTGACACTGGTTCAACGTCTNACGGAGCAAAATCAC CCGAAAACAGAGCAAGTTTTTAACACCCcgaacaaggcaaattttgtaga tttttttacTACCACAGGACATTATATCCTCCACTCCACCCCCCACCTCC CATGTACGatcattttctggaagagcccattttagaaagatttgaaCCGT TTATTCGAATATGCGTGAGTCAATCTTTACGGGTTGCTTTAAGAATTCCA GTTTAAATATTACTATCAATTTTCGTTTTCCTAGGCACTGAAAAACGTAA TGTTGAAGCGATTCATCGAAGCACTTCGTGTCAAATGTATAAACTCTTGG CGAGGGTGTACTTGGGTCGGAGAAGTCAGCAACATAAAGGTTAGTTAAAA TGAAATAACGTGGCAATGATAATGTCTGTAGTGTGaggaaattcaaaatt ctaTCATTTCAGTACTTTCTACTTACTTTATCCATACGTAATCCTTAAAT CAATTTAAAGTATATTTTGGGAAATTTcttcataattttttataaaaggt aGTATCAATCACAAGTAAGATATCGGCCCTGGAAAATCAAGGTGTATAAT GGAATTTTCATGATAAAGTCTATTGGTAATAGACGAAATTCCAGAGATGG GTCTTGTaaactttgaaatgaaaatcCAAGGGGGTACCCCCTTCTACCCC ATCTAAAACTTCAAGACAACTTGCTAAAATGTAAGCAGAAGACGTCCGTC CCATCCAAAATTGACCTCTTTAACATTGGGAGTATAACAATTATATATTT CTTCTGCTGTAGGATCATTCGTGTGATTATGAAATGACGAAATGTACAAA TGCTGGTTGTGGTGCAGAAATCGAAAAGAAATCTTTACCGGATCATCTGT TAAAATGCAATGTGAGTATATATGTTTCCTTTTACTTCTTGATAACGAGG TCATTTTTGTGGTTTGTTGATATGTCTTGTTACTGTCCTTTGGATAAAAC TGTAAAATGTCGTAGATCTGGTATGGGTAACCTATAGAAATAGACTAAAC CAATGAAATCGCATGTAGGAATATATCAAGATAGTCGAGGCTGTCAATTC GTTTTTGCTTAATGAAATATCTTATATTATAGGTAAAAGCCGAGGCCAGC AATTCAAATTATCTTataaagtcttatttttattttgtaggtaaAAGCAG CCGAAACAGATGAACTAAATCAGAAAGTCAAAGATCAATCTAAAGAGATT ATAGATCTCAAAACGCAATTAACAGATTacgaaacattaaaaaaagatca tcaaaatctacagacagaacaacaaaacttacaaaattttaatcaatttc tgCAAGCCAGAATAGATGTACTGGAGACGGAGCAAAAGAAACGAGACAGG AGAATAACAAACTCACCTATTACTATAGAAGATACTGAAAAGAAACCCTT CGTGACGCTGGAAGATTTAGAGTGTATTGTTATCAGTGACGACGATGAGA AAAATGGTTTACCAGATTGTGAAAATGCTCTACCACATTCCGTGCACTCT ACAAACACTGATGCAAACGTTGACTCACATACCTTACACTCACCAAATGC TATTCCAGAGTCTCCAGAAAGGTTATCTACACCTTTTGCTGATATTGAAA GTATTATATCACGAACCACTTTCAACCGTACTGATAGTGGTAATAGCTTT ACATATTCAACGGCTGGCCCGTCTTCTTCGAATGATGTAAACGGGCTACC ATATTCTTCACAGTATTTCAACAATCTTTCAGTCTCTTCTCCTCTTCATA TGAACAATCGTCCACGTACACCGCAGTCACTGTATGAAAATAATAATGAT AGTGGTAATAGCTTTACACAATCATCaaatttaccacattcttcatcatt tttcaaTCCATTCTCGTATCAAAATAGTATTGACACTGGTTCAACGTCTC GTATTTTTTCTCCATACGATTTCAGTAATATTGGTgctaattttcaataa ttttcacgTGGATTCTTTAttgattttcactaaaaacatCATGACCATCA AATGGTCAATGATAGCTATTCTTGTGTTTTTAAAAGCATTGTATTATAAC acgtttatatttttttgtaaatatttatattaaaaCGATAGTAAAAAACT AACAGATCTTCTTTATTCGGTTAATAAAACATGTGGATCGCGCCCGTCAT CAGTTTTATGATACCCATCATAGTCCTTCTCT

Coding sequence (CDS) from alignment at sc0000018:406111..415142+

>TCONS_00002037 ID=TCONS_00002037|Name=TCONS_00002037|organism=Clytia hemisphaerica|type=CDS|length=6375bp|location=Sequence derived from alignment at sc0000018:406111..415142+ (Clytia hemisphaerica)
ATGATGGATTCTTTGAAACCCTTCACCACAGACAGTATAACAGACGTTGA
CCAAGGAGGTTATGATGTTGACCTGGAAGATAAACTTGACTTACCACCTG
ATTTGAAATGTACCATTTGTTGGAAATTGATGAAAGATCCAATGCAATTC
CCTTGTGGTCATGGTACTTGTAATTATTGTCTACAATCGCTGGCTAAAAG
CAGCTCATCAAAAAGTCGACCGCTGTGTCCACAATGTAGAAGTCCGATAC
CAATCAAAAAAgCACTGAAAAACGTAATGTTGAAGCGATTCATCGAAGCA
CTTCGTGTCAAATGTATGAACTCTTGGCGAGGGTGTACTTGGGTCGGAGA
AGTCAGCAACATTAAGGATCATTCGTGTGATTATGAAATGACGAAATGTA
CAAATGCTGGTTGTGGTGCAGAAATCGAAAAGAAATCTTTACCGGATCAT
CTGTTAAAATGCAATgtaaAAGCAGCCGAAACAGATGAACTAAATCAGAA
AGTCAAAGATCAATCTAAAGAGATTATAGATCTCAAAACGCAATTAACAG
ATTacgaaacattaaaaaaagatcatcaaaatctacagacagaacaacaa
aacttacaaaattttaatcaatttctgCAAGCCAGAATAGATGTACTGGA
GACGGAGCAAAAGAAACGAGACAGGAGAATAACAAACTCACCTATTACTA
TAGAAGATACTGAAAAGAAACCCTTCGTGACGCTGGAAGATTTAGAGTGT
ATTGTTATCAGTGACGACGATGAGAAAAATGGTTTACCAGATTGTGAAAA
TGCTCTACCACATTCCGTGCACTCTACAAACACTGATGCAAACGTTGACT
CACATACCTTACACTCACCAAATGCTATTCCAGAGTCTCCAGAAAGGTTA
TCTACACCTTTTGCTGATATTGAAAGTATTATATCACGAACCACTTTCAA
CCGTACTGATAGTGGTAATAGCTTTACATATTCAACGGCTGGCCCGTCTT
CTTCGAATGATGTAAACGGGCTACCATATTCTTCACAGTATTTCAACAAT
CTTTCAGTCTCTTCTCCTCTTCATATGAACAATCGTCCACGTACACCGCA
GTCACTGTATGAAAATAATAATGATAGTGGTAATAGCTTTACACAATCAT
CaaatttaccacattcttcatcatttttcaaTCCATTCTCGTATCAAAAT
AGTATTGACACTGGTTCAACGTCTCGTATTTTTTCTCCATACGATTTCAG
TAATATTGGTgctaattttcaataaATGATGGATTCTTTGAAACCCTTCA
CCACAGACAGTATAACAGACGTTGACCAAGGAGGTTATGATGTTGACCTG
GAAGATAAACTTGACTTACCACCTGATTTGAAATGTACCATTTGTTGGAA
ATTGATGAAAGATCCAATGCAATTCCCTTGTGGTCATGGTACTTGTAATT
ATTGTCTACAATCGCTGGCTAAAAGCAGCTCATCAAAAAGTCGACCGCTG
TGTCCACAATGTAGAAGTCCGATACCAATCAAAAAAgCACTGAAAAACGT
AATGTTGAAGCGATTCATCGAAGCACTTCGTGTCAAATGTATGAACTCTT
GGCGAGGGTGTACTTGGGTCGGAGAAGTCAGCAACATTAAGGATCATTCG
TGTGATTATGAAATGACGAAATGTACAAATGCTGGTTGTGGTGCAGAAAT
CGAAAAGAAATCTTTACCGGATCATCTGTTAAAATGCAATgtaaAAGCAG
CCGAAACAGATGAACTAAATCAGAAAGTCAAAGATCAATCTAAAGAGATT
ATAGATCTCAAAACGCAATTAACAGATTacgaaacattaaaaaaagatca
tcaaaatctacagacagaacaacaaaacttacaaaattttaatcaatttc
tgCAAGCCAGAATAGATGTACTGGAGACGGAGCAAAAGAAACGAGACAGG
AGAATAACAAACTCACCTATTACTATAGAAGATACTGAAAAGAAACCCTT
CGTGACGCTGGAAGATTTAGAGTGTATTGTTATCAGTGACGACGATGAGA
AAAATGGTTTACCAGATTGTGAAAATGCTCTACCACATTCCGTGCACTCT
ACAAACACTGATGCAAACGTTGACTCACATACCTTACACTCACCAAATGC
TATTCCAGAGTCTCCAGAAAGGTTATCTACACCTTTTGCTGATATTGAAA
GTATTATATCACGAACCACTTTCAACCGTACTGATAGTGGTAATAGCTTT
ACATATTCAACGGCTGGCCCGTCTTCTTCGAATGATGTAAACGGGCTACC
ATATTCTTCACAGTATTTCAACAATCTTTCAGTCTCTTCTCCTCTTCATA
TGAACAATCGTCCACGTACACCGCAGTCACTGTATGAAAATAATAATGAT
AGTGGTAATAGCTTTACACAATCATCaaatttaccacattcttcatcatt
tttcaaTCCATTCTCGTATCAAAATAGTATTGACACTGGTTCAACGTCTC
GTATTTTTTCTCCATACGATTTCAGTAATATTGGTgctaattttcaataa
ATGATGGATTCTTTGAAACCCTTCACCACAGACAGTATAACAGACGTTGA
CCAAGGAGGTTATGATGTTGACCTGGAAGATAAACTTGACTTACCACCTG
ATTTGAAATGTACCATTTGTTGGAAATTGATGAAAGATCCAATGCAATTC
CCTTGTGGTCATGGTACTTGTAATTATTGTCTACAATCGCTGGCTAAAAG
CAGCTCATCAAAAAGTCGACCGCTGTGTCCACAATGTAGAAGTCCGATAC
CAATCAAAAAAgCACTGAAAAACGTAATGTTGAAGCGATTCATCGAAGCA
CTTCGTGTCAAATGTATGAACTCTTGGCGAGGGTGTACTTGGGTCGGAGA
AGTCAGCAACATTAAGGATCATTCGTGTGATTATGAAATGACGAAATGTA
CAAATGCTGGTTGTGGTGCAGAAATCGAAAAGAAATCTTTACCGGATCAT
CTGTTAAAATGCAATgtaaAAGCAGCCGAAACAGATGAACTAAATCAGAA
AGTCAAAGATCAATCTAAAGAGATTATAGATCTCAAAACGCAATTAACAG
ATTacgaaacattaaaaaaagatcatcaaaatctacagacagaacaacaa
aacttacaaaattttaatcaatttctgCAAGCCAGAATAGATGTACTGGA
GACGGAGCAAAAGAAACGAGACAGGAGAATAACAAACTCACCTATTACTA
TAGAAGATACTGAAAAGAAACCCTTCGTGACGCTGGAAGATTTAGAGTGT
ATTGTTATCAGTGACGACGATGAGAAAAATGGTTTACCAGATTGTGAAAA
TGCTCTACCACATTCCGTGCACTCTACAAACACTGATGCAAACGTTGACT
CACATACCTTACACTCACCAAATGCTATTCCAGAGTCTCCAGAAAGGTTA
TCTACACCTTTTGCTGATATTGAAAGTATTATATCACGAACCACTTTCAA
CCGTACTGATAGTGGTAATAGCTTTACATATTCAACGGCTGGCCCGTCTT
CTTCGAATGATGTAAACGGGCTACCATATTCTTCACAGTATTTCAACAAT
CTTTCAGTCTCTTCTCCTCTTCATATGAACAATCGTCCACGTACACCGCA
GTCACTGTATGAAAATAATAATGATAGTGGTAATAGCTTTACACAATCAT
CaaatttaccacattcttcatcatttttcaaTCCATTCTCGTATCAAAAT
AGTATTGACACTGGTTCAACGTCTCGTATTTTTTCTCCATACGATTTCAG
TAATATTGGTgctaattttcaataaATGATGGATTCTTTGAAACCCTTCA
CCACAGACAGTATAACAGACGTTGACCAAGGAGGTTATGATGTTGACCTG
GAAGATAAACTTGACTTACCACCTGATTTGAAATGTACCATTTGTTGGAA
ATTGATGAAAGATCCAATGCAATTCCCTTGTGGTCATGGTACTTGTAATT
ATTGTCTACAATCGCTGGCTAAAAGCAGCTCATCAAAAAGTCGACCGCTG
TGTCCACAATGTAGAAGTCCGATACCAATCAAAAAAgCACTGAAAAACGT
AATGTTGAAGCGATTCATCGAAGCACTTCGTGTCAAATGTATGAACTCTT
GGCGAGGGTGTACTTGGGTCGGAGAAGTCAGCAACATTAAGGATCATTCG
TGTGATTATGAAATGACGAAATGTACAAATGCTGGTTGTGGTGCAGAAAT
CGAAAAGAAATCTTTACCGGATCATCTGTTAAAATGCAATgtaaAAGCAG
CCGAAACAGATGAACTAAATCAGAAAGTCAAAGATCAATCTAAAGAGATT
ATAGATCTCAAAACGCAATTAACAGATTacgaaacattaaaaaaagatca
tcaaaatctacagacagaacaacaaaacttacaaaattttaatcaatttc
tgCAAGCCAGAATAGATGTACTGGAGACGGAGCAAAAGAAACGAGACAGG
AGAATAACAAACTCACCTATTACTATAGAAGATACTGAAAAGAAACCCTT
CGTGACGCTGGAAGATTTAGAGTGTATTGTTATCAGTGACGACGATGAGA
AAAATGGTTTACCAGATTGTGAAAATGCTCTACCACATTCCGTGCACTCT
ACAAACACTGATGCAAACGTTGACTCACATACCTTACACTCACCAAATGC
TATTCCAGAGTCTCCAGAAAGGTTATCTACACCTTTTGCTGATATTGAAA
GTATTATATCACGAACCACTTTCAACCGTACTGATAGTGGTAATAGCTTT
ACATATTCAACGGCTGGCCCGTCTTCTTCGAATGATGTAAACGGGCTACC
ATATTCTTCACAGTATTTCAACAATCTTTCAGTCTCTTCTCCTCTTCATA
TGAACAATCGTCCACGTACACCGCAGTCACTGTATGAAAATAATAATGAT
AGTGGTAATAGCTTTACACAATCATCaaatttaccacattcttcatcatt
tttcaaTCCATTCTCGTATCAAAATAGTATTGACACTGGTTCAACGTCTC
GTATTTTTTCTCCATACGATTTCAGTAATATTGGTgctaattttcaataa
ATGATGGATTCTTTGAAACCCTTCACCACAGACAGTATAACAGACGTTGA
CCAAGGAGGTTATGATGTTGACCTGGAAGATAAACTTGACTTACCACCTG
ATTTGAAATGTACCATTTGTTGGAAATTGATGAAAGATCCAATGCAATTC
CCTTGTGGTCATGGTACTTGTAATTATTGTCTACAATCGCTGGCTAAAAG
CAGCTCATCAAAAAGTCGACCGCTGTGTCCACAATGTAGAAGTCCGATAC
CAATCAAAAAAgCACTGAAAAACGTAATGTTGAAGCGATTCATCGAAGCA
CTTCGTGTCAAATGTATGAACTCTTGGCGAGGGTGTACTTGGGTCGGAGA
AGTCAGCAACATTAAGGATCATTCGTGTGATTATGAAATGACGAAATGTA
CAAATGCTGGTTGTGGTGCAGAAATCGAAAAGAAATCTTTACCGGATCAT
CTGTTAAAATGCAATgtaaAAGCAGCCGAAACAGATGAACTAAATCAGAA
AGTCAAAGATCAATCTAAAGAGATTATAGATCTCAAAACGCAATTAACAG
ATTacgaaacattaaaaaaagatcatcaaaatctacagacagaacaacaa
aacttacaaaattttaatcaatttctgCAAGCCAGAATAGATGTACTGGA
GACGGAGCAAAAGAAACGAGACAGGAGAATAACAAACTCACCTATTACTA
TAGAAGATACTGAAAAGAAACCCTTCGTGACGCTGGAAGATTTAGAGTGT
ATTGTTATCAGTGACGACGATGAGAAAAATGGTTTACCAGATTGTGAAAA
TGCTCTACCACATTCCGTGCACTCTACAAACACTGATGCAAACGTTGACT
CACATACCTTACACTCACCAAATGCTATTCCAGAGTCTCCAGAAAGGTTA
TCTACACCTTTTGCTGATATTGAAAGTATTATATCACGAACCACTTTCAA
CCGTACTGATAGTGGTAATAGCTTTACATATTCAACGGCTGGCCCGTCTT
CTTCGAATGATGTAAACGGGCTACCATATTCTTCACAGTATTTCAACAAT
CTTTCAGTCTCTTCTCCTCTTCATATGAACAATCGTCCACGTACACCGCA
GTCACTGTATGAAAATAATAATGATAGTGGTAATAGCTTTACACAATCAT
CaaatttaccacattcttcatcatttttcaaTCCATTCTCGTATCAAAAT
AGTATTGACACTGGTTCAACGTCTCGTATTTTTTCTCCATACGATTTCAG
TAATATTGGTgctaattttcaataa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_001072XLOC_001072Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00002037-exon-sc0000018-1491911889:406111..410069TCONS_00002037-exon-sc0000018-1491911889:406111..410069Clytia hemisphaericaexon
TCONS_00002037-exon-sc0000018-1510915933:406111..410069TCONS_00002037-exon-sc0000018-1510915933:406111..410069Clytia hemisphaericaexon
TCONS_00002037-exon-sc0000018-1575043694:406111..410069TCONS_00002037-exon-sc0000018-1575043694:406111..410069Clytia hemisphaericaexon
TCONS_00002037-exon-sc0000018-1491911889:410466..410523TCONS_00002037-exon-sc0000018-1491911889:410466..410523Clytia hemisphaericaexon
TCONS_00002037-exon-sc0000018-1510915933:410466..410523TCONS_00002037-exon-sc0000018-1510915933:410466..410523Clytia hemisphaericaexon
TCONS_00002037-exon-sc0000018-1575043694:410466..410523TCONS_00002037-exon-sc0000018-1575043694:410466..410523Clytia hemisphaericaexon
TCONS_00002037-exon-sc0000018-1491911889:411279..411383TCONS_00002037-exon-sc0000018-1491911889:411279..411383Clytia hemisphaericaexon
TCONS_00002037-exon-sc0000018-1510915933:411279..411383TCONS_00002037-exon-sc0000018-1510915933:411279..411383Clytia hemisphaericaexon
TCONS_00002037-exon-sc0000018-1575043694:411279..411383TCONS_00002037-exon-sc0000018-1575043694:411279..411383Clytia hemisphaericaexon
TCONS_00002037-exon-sc0000018-1491911889:413723..413821TCONS_00002037-exon-sc0000018-1491911889:413723..413821Clytia hemisphaericaexon
TCONS_00002037-exon-sc0000018-1510915933:413723..413821TCONS_00002037-exon-sc0000018-1510915933:413723..413821Clytia hemisphaericaexon
TCONS_00002037-exon-sc0000018-1575043694:413723..413821TCONS_00002037-exon-sc0000018-1575043694:413723..413821Clytia hemisphaericaexon
TCONS_00002037-exon-sc0000018-1491911889:414101..415142TCONS_00002037-exon-sc0000018-1491911889:414101..415142Clytia hemisphaericaexon
TCONS_00002037-exon-sc0000018-1510915933:414101..415142TCONS_00002037-exon-sc0000018-1510915933:414101..415142Clytia hemisphaericaexon
TCONS_00002037-exon-sc0000018-1575043694:414101..415142TCONS_00002037-exon-sc0000018-1575043694:414101..415142Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00002037-proteinTCONS_00002037-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000018supercontigsc0000018:406111..415142 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.11315 1.24211 0.237503 0.245994 1.11585 0.657407 1.24176 2.84813 0.579439 1.50327 1.04855 1.28368 2.3448 1.46285 0.914962 0.577839 8.36869e-06 0.879006 1.80979 1.6939 0.905382 0.42871 1.20901 1.38256 0.000315914 1.61075 4.05034 3.29577 1.76676 1.8284
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR001841Znf_RING
IPR013083Znf_RING/FYVE/PHD
IPR008974TRAF-like
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00002037 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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