TCONS_00001932-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00001932-protein
Unique NameTCONS_00001932-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length241

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00001932-protein ID=TCONS_00001932-protein|Name=TCONS_00001932-protein|organism=Clytia hemisphaerica|type=polypeptide|length=241bp
MMADFNFKIIVVGSSGVGKTAVVQRYVRKSFKENDQSTIGIDIGIKLLQI
DDYKIQLKIWDSAGSERFKSLTTSYYRNADAAILMYGINNPQSLHELHTW
STEVTHHAEILKILVGNKNDLDVEERKIFEETAVNFALMENIDLAVECSA
KIDDNVDYIFHTIAKKLLHKELALNSTNSKRNIKKGLNNDLVKYQGTSDS
MDNLFLTPKEIASLNKRNNESCQLDQIRPRKNLFQRICSIL
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_000998XLOC_000998Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00001932TCONS_00001932Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001806Small_GTPase
IPR005225Small_GTP-bd_dom
IPR027417P-loop_NTPase
Vocabulary: Molecular Function
TermDefinition
GO:0005525GTP binding
GO:0003924GTPase activity
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003924 GTPase activity
molecular_function GO:0005525 GTP binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePRINTSPR00449RASTRNSFRMNGcoord: 7..28
score: 41.42
coord: 145..167
score: 33.99
coord: 30..46
score: 28.5
coord: 108..121
score: 48.44
coord: 48..70
score: 39.49
NoneNo IPR availableSMARTSM00174rho_sub_3coord: 9..170
e-value: 4.7E-11
score: 22.1
NoneNo IPR availableSMARTSM00173ras_sub_4coord: 4..170
e-value: 9.3E-12
score: 48.8
NoneNo IPR availableSMARTSM00176ran_sub_2coord: 12..204
e-value: 2.9E-5
score: 25.6
NoneNo IPR availableSMARTSM00175rab_sub_5coord: 7..170
e-value: 1.2E-50
score: 184.3
NoneNo IPR availableGENE3D3.40.50.300coord: 71..168
e-value: 1.9E-24
score: 85.1
NoneNo IPR availableGENE3D3.30.70.1390coord: 5..70
e-value: 1.2E-23
score: 82.3
NoneNo IPR availablePROSITEPS51419RABcoord: 2..238
score: 25.587
NoneNo IPR availableCDDcd00154Rabcoord: 7..165
e-value: 7.61711E-59
score: 184.582
IPR001806Small GTPase superfamilyPFAMPF00071Rascoord: 8..168
e-value: 2.0E-45
score: 154.2
IPR005225Small GTP-binding protein domainTIGRFAMTIGR00231TIGR00231coord: 7..163
e-value: 1.5E-22
score: 78.1
IPR027417P-loop containing nucleoside triphosphate hydrolaseSUPERFAMILY52540P-loop containing nucleoside triphosphate hydrolasescoord: 1..169

Blast
[Close]
BLAST of TCONS_00001932-protein vs. Swiss-Prot (Human)
Match: RAB30 (Ras-related protein Rab-30 OS=Homo sapiens GN=RAB30 PE=1 SV=2)

HSP 1 Score: 135.576 bits (340), Expect = 1.215e-39
Identity = 69/169 (40.83%), Postives = 113/169 (66.86%), Query Frame = 0 
Query:    4 DFNFKIIVVGSSGVGKTAVVQRYVRKSFKENDQSTIGIDIGIKLLQIDDYKIQLKIWDSAGSERFKSLTTSYYRNADAAILMYGINNPQSLHELHTWSTEVTHHA--EILKILVGNKNDLDVEERKIFEETAVNFALMENIDLAVECSAKIDDNVDYIFHTIAKKLLHK 170
            DF FKI+++G++GVGKT +V+R+ +  F     +TIG+D  IK ++I+  K++L+IWD+AG ERF+S+T SYYR+A+A IL Y I   +S   L  W  E+  +A  +++ +LVGNK DL  E R++ ++ A  F+  +++   +E SAK  DNV+ +F  +A +L+ +
Sbjct:    7 DFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQERFRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYASNKVITVLVGNKIDL-AERREVSQQRAEEFSEAQDM-YYLETSAKESDNVEKLFLDLACRLISE 173
The following BLAST results are available for this feature:
BLAST of TCONS_00001932-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
RAB301.215e-3940.83Ras-related protein Rab-30 OS=Homo sapiens GN=RAB3... [more]
back to top