TCONS_00001521-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00001521-protein
Unique Name	TCONS_00001521-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	817

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00001521-protein ID=TCONS_00001521-protein|Name=TCONS_00001521-protein|organism=Clytia hemisphaerica|type=polypeptide|length=817bp
MLPAYQCHWPEDSLPEQKITKSICSWSSKNWIAYSTGYENGNSSLDVNTV
YILNPDMPWENFPINTGHQGLIEHLEWDASGDYLLTVDNTGMGKIWNQEK
SLINNWTCLENCTIDLNNGGRICKIAWLNSTAHRYLPDFDKSGTMKEWFH
RFNQNQSDLLLTSYKENNVGFVMITAERLVKVHFLNPSNKLSKQVYSDRL
GTLKSEIISSDFVISDAGKLFVAAVTEPCMVELFSVTFMDGPNGLDISEE
VFPCIVPYVTGEPDFDEYEITDVKCVKKCNPNFSSDLVAVSSKSATASSV
KIYEIRKEIVRLHSRFQSQGQTGQPTDTVNCLLTIQYPDVQIEHISITSL
QLSAAHTSQITSQTLLPKLLVLDNQGAVHLYSMYNLQQIAQPSSFPELKN
DPFDSTSFAPTDHAMFSVSRNAKLTLLTFSNQLNSQDKNKAKSIVTMLQC
CLAESRSPWDIMLHISTYEKPFIDQCLQQFVSEFNENDGNTQSLFRQSFS
HFKALIFAILKDYKGVFESYNQTFLHNIYYHLTALLQNEKEINLLEKIHN
ICLANKKEFEMTKIVPLLDTKDVTFSGLSNLSTKPIIQWLTDYMLHLVRL
LLATSHHHNDWKIVLQYFDASTFFILRKTCILFYILFQKNPNIQPVYVTM
VNSTEVLLQLFKMISKLYAACLGDPQSGDALLSELPFSSLPLMYLNYPTQ
DPRGTVLSTTSFNAMGNSSFNHYDIQLTVDDWQTVHETALKNPLIMGAHD
IYTQKKQIYDGIRLSPTSLVANESVKQCCRCAVLTIYNCHQTRSFNELWA
NSWNDNCLCGGNWKKIY

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_000780	XLOC_000780	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00001521	TCONS_00001521	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR021665	Mediator_Med16
IPR015943	WD40/YVTN_repeat-like_dom
IPR017986	WD40_repeat_dom

Vocabulary: **Molecular Function**
Term	Definition
GO:0005515	protein binding

GO Annotation

GO Assignments

This polypeptide is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0005515	protein binding

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR021665	Mediator complex, subunit Med16	PFAM	PF11635	Med16	coord: 715..814 e-value: 1.1E-6 score: 26.8
IPR015943	WD40/YVTN repeat-like-containing domain	GENE3D	2.130.10.10		coord: 6..444 e-value: 2.6E-13 score: 49.1
IPR017986	WD40-repeat-containing domain	SUPERFAMILY	50978	WD40 repeat-like	coord: 350..427 coord: 24..155 coord: 272..306 coord: 191..237

Blast

[Close]

BLAST of TCONS_00001521-protein vs. Swiss-Prot (Human)
Match: MED16 (Mediator of RNA polymerase II transcription subunit 16 OS=Homo sapiens GN=MED16 PE=1 SV=2)

HSP 1 Score: 125.946 bits (315), Expect = 1.393e-29
Identity = 191/855 (22.34%), Postives = 352/855 (41.17%), Query Frame = 0

Query:    4 AYQCHWPEDSLPEQKITKSI--------CSWSSKNWIAYSTGYENGNSSLDVNTVYILNPDMPWENFPINTGHQGLIEHLEWDASGDYLLTVDNTGMGKIWNQEKSLINNWTCLENCTIDLNNGGRICKIAWLNSTAHRYLPDFDKSG--TMKEWFHRFNQNQSDLLLTSYKENNVGFVMITAERLVKVHFLNPSNKLSKQVYSDRLGTLKSEIISSDFVISDAGKLFVAAV--TEPCMVELFSVTFMDGPNGLDISEEVFPCIVPYVTGEPDFDEY--EITDVKCVKKCNPNFSSDLVAVSSKSATASSVKIYEIRKEIVRLHSRFQSQGQT---GQPTDTVNCLLTIQYPDVQIEHISITSLQLSAAHTS-QITSQT-LLPKL-LVLD-NQGAVHLYSMYNLQQIA--------QPSSFPELKNDP-------FDSTSFAPTDHAMFSVSRNAKLTLLTFSNQLNS--QDKNKAKSIVTMLQCCLAESRSPWDIMLHISTYEKPFIDQCLQQFVSEFNENDGNTQSLFRQSFSHFKALIFAILK-DYKGVFESYNQTFLHNIYYHLTALLQ----NEKEINLLEKIHNICLANKKEFEMTKIVPLLDTKDVTFSGLSNLSTKPIIQWLTDYMLHLVRLLLATSHHHNDWKIVLQYFDASTFFILRKTCILFYILFQKNPNIQPVYVTMVNSTEVLLQLFKMISKLYAACLGD-PQS--GDALLSE---LPFSSLPLMYLNY-PTQDPRGTVLSTTSFNAMGNSSFNHYDIQLTVDDWQTVHETALKNPLIMGAHDIYTQKKQIYDGIRLSPTSLVANESVKQCCRCAVLTIYNCHQTRSFNELWANSWNDNCL 808
            AY C W       +K +KS         C+WS +N IA++    + +  L    ++IL+ + PW+   I + H   I  LEWD SG  LL+ D  G  K W+    L N+W   E+    L  G  I  ++WL++     L   +KSG  +  E F R   + S  L         G++ +T   LV V  L PS ++     S  L  L+  +  +D   +  G + VA    +    V+ + V          I  E+ P +    T + +  +    IT +K + +      S+ V + + S T+S V+ + +RKE + +++ FQ         QPT     +L+      ++  +++  L +S  +T  ++ S T   P L L L  + G+VH+    +LQ +A        +P   P +K            +   + T  A+  +  + KL++L  S  +    +     + ++ +L+ C+      WDI+LH+   +   +   +++   E+       Q +        KA +  +       V + + + FL  I   L +LL+    N  + +  +++  IC     + ++ K++  L T++      +  + + ++QW+ D++L+L+  L             L+  D ++  +LR+  ++  I     P+  PVY    ++ + +  LF++++KL+  C  + P S   +AL+ E   LP S L +  L++ P  D   + L                 ++L      T+  +A    L  G      Q K   D +R         E  K C RC  +T+       +  + W   W  NCL
Sbjct:   16 AYVCEW-------EKWSKSTHCPSVPLACAWSCRNLIAFTMDLRSDDQDL-TRMIHILDTEHPWDLHSIPSEHHEAITCLEWDQSGSRLLSADADGQIKCWSMADHLANSW---ESSVGSLVEGDPIVALSWLHNGVKLAL-HVEKSGASSFGEKFSRVKFSPSLTLFGGKPME--GWIAVTVSGLVTVSLLKPSGQVLTSTES--LCRLRGRVALADIAFTGGGNIVVATADGSSASPVQFYKVCVSVVSEKCRIDTEILPSLFMRCTTDLNRKDKFPAITHLKFLAR----DMSEQVLLCASSQTSSIVECWSLRKEGLPVNNIFQQISPVVGDKQPTILKWRILSATNDLDRVSAVALPKLPISLTNTDLKVASDTQFYPGLGLALAFHDGSVHIVHRLSLQTMAVFYSSAAPRPVDEPAMKRPRTAGPAVHLKAMQLSWTSLALVGIDSHGKLSVLRLSPSMGHPLEVGLALRHLLFLLEYCMVTGYDWWDILLHV---QPSMVQSLVEKLHEEYTRQTAALQQVLSTRILAMKASLCKLSPCTVTRVCDYHTKLFLIAISSTLKSLLRPHFLNTPDKSPGDRLTEIC-TKITDVDIDKVMINLKTEEFVLDMNTLQALQQLLQWVGDFVLYLLASLPNQGSLLRPGHSFLR--DGTSLGMLRELMVVIRIWGLLKPSCLPVYTATSDTQDSMSLLFRLLTKLWICCRDEGPASEPDEALVDECCLLP-SQLLIPSLDWLPASDGLVSRLQPKQ------------PLRLQFGRAPTLPGSAATLQLD-GLARAPGQPK--IDHLRRLHLGACPTEECKACTRCGCVTMLKSPNRTTAVKQWEQRWIKNCL 828

The following BLAST results are available for this feature:

BLAST of TCONS_00001521-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00001521-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
MED16	1.393e-29	22.34	Mediator of RNA polymerase II transcription subuni...	[more]

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TCONS_00001521-protein (polypeptide) - C. hemisphaerica