TCONS_00001520-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00001520-protein
Unique Name	TCONS_00001520-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	308

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00001520-protein ID=TCONS_00001520-protein|Name=TCONS_00001520-protein|organism=Clytia hemisphaerica|type=polypeptide|length=308bp
MSEENIAKDIPLFLSAMNSLKTITKDSDAHIKGLMEKISTSEEDRNDGLS
FLEMKFHLVLDYLINLTFTMILKINGKSLVEQPCIDRLVEIRTVLEKIRP
INKKLSYQVDKLIKMASEAVEGQANPLSFKPNLNNLVNKDEEDSEGSEEE
DGHKKDEVYVPPRVTAVPYDEEEDKQKKKMEKARQKSLNNALLQDLRNEY
SEAPEEIRSGRNGNMRAKLQKKEEERQRFEEDNFRRLTVTKKDRLMKRKL
NDLDTVVKLDSFHGAGDDDSDSDMGDDRYNPKKKKGKGKKDKFKKKISGG
SSGKKRRR

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_000779	XLOC_000779	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00001520	TCONS_00001520	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR007146	Sas10/Utp3/C1D

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 212..232
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 247..308
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 125..233
IPR007146	Sas10/Utp3/C1D	PFAM	PF04000	Sas10_Utp3	coord: 19..97 e-value: 5.8E-16 score: 58.8

Blast

[Close]

BLAST of TCONS_00001520-protein vs. Swiss-Prot (Human)
Match: NGDN (Neuroguidin OS=Homo sapiens GN=NGDN PE=1 SV=1)

HSP 1 Score: 157.147 bits (396), Expect = 8.180e-46
Identity = 99/292 (33.90%), Postives = 177/292 (60.62%), Query Frame = 0

Query:    9 DIPLFLSAMNSLKTITKDSDAHIKGLMEKISTSEEDRNDGLSFLEMKFHLVLDYLINLTFTMILKINGKSLVEQPCIDRLVEIRTVLEKIRPINKKLSYQVDKLIKMASEAVEGQANPLSFKPNLNNLVNK-----------DEEDSEGSEEEDGHKKDEVYVPPRVTAVPYDE-EEDKQKKKMEKARQKSLNNALLQDLRNEYSEAPEEIRSGRNGNMRAKLQKKEEERQRFEEDNFRRLTVTKKDRLMKRKLNDLDTVVK-LDSFHGAGDDDSDSDMGDDRYNPKKKKGK 287
            D+P  ++ + +L+       A +K L +K+         GLSFLE+K  L+L YL++LT  ++ K +G SL     + RLVEIRTVLEK+RP+++KL YQ+DKLIK A      + +PL FKP+ +N+++K           +++ SE S ++      + YVPPR+  V YDE E +++KK++E+A++++L+++++++L+ +YS+APEEIR  R+ ++  + Q +++ R  +EE    RL+V+K+++  +++ N + + +  L  F         +   D+  NP KK+ K
Sbjct:   10 DLPSAVTLLKNLQEQVMAVTAQVKSLTQKVQAGAYPTEKGLSFLEVKDQLLLMYLMDLTHLILDKASGGSLQGHDAVLRLVEIRTVLEKLRPLDQKLKYQIDKLIKTAVTGSLSENDPLRFKPHPSNMMSKLSSEDEEEDEAEDDQSEASGKKSVKGVSKKYVPPRLVPVHYDETEAEREKKRLERAKRRALSSSVIRELKEQYSDAPEEIRDARHPHVTRQSQ-EDQHRINYEESMMVRLSVSKREKGRRKRANVMSSQLHSLTHFSDISALTGGTVHLDEDQNPIKKRKK 300

The following BLAST results are available for this feature:

BLAST of TCONS_00001520-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00001520-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
NGDN	8.180e-46	33.90	Neuroguidin OS=Homo sapiens GN=NGDN PE=1 SV=1	[more]

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TCONS_00001520-protein (polypeptide) - C. hemisphaerica