TCONS_00001270-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00001270-protein
Unique NameTCONS_00001270-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length340

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00001270-protein ID=TCONS_00001270-protein|Name=TCONS_00001270-protein|organism=Clytia hemisphaerica|type=polypeptide|length=340bp
RSLRKKNKTSCQKAYDSYINDSIMNDNPKKFYKFIKSKRQDSVGVPTLKV
NNKVIIDDQMKAEVLNSQYCSVFSNPDGKTPPIPNRVVNQMSDFTVSSDG
IKKLIKSLRPHKATGPDTIKARFLIEFADEISPALKLIFEASLKQSELPT
AWKHSLIVPAYKGNGKCRSNPESYRPISLTSIVCKLLEHILYSKVMSHLT
ENKVLSELQVGFREKRSCESQLLLTVNDFAKALNNGDQVDSILLDFSKAF
DKVDHSKLCHKLEHYGVRGSHLSWIKSFLRNRTQQVVVNGKTSKYAEVKS
GVPQGTVLGPLLFLVYINDLYVYFRMMPICTERYLLLKTK
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_000674XLOC_000674Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00001270TCONS_00001270Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000477RT_dom
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000477Reverse transcriptase domainPFAMPF00078RVT_1coord: 171..321
e-value: 3.8E-32
score: 111.5
IPR000477Reverse transcriptase domainPROSITEPS50878RT_POLcoord: 141..340
score: 14.636
NoneNo IPR availableGENE3D3.30.70.270coord: 189..335
e-value: 2.0E-16
score: 59.6
NoneNo IPR availableCDDcd01650RT_nLTR_likecoord: 154..320
e-value: 1.75534E-36
score: 131.259
NoneNo IPR availableSUPERFAMILY56672DNA/RNA polymerasescoord: 69..323

Blast
[Close]
BLAST of TCONS_00001270-protein vs. Swiss-Prot (Human)
Match: LORF2 (LINE-1 retrotransposable element ORF2 protein OS=Homo sapiens PE=1 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 3.866e-20
Identity = 63/219 (28.77%), Postives = 109/219 (49.77%), Query Frame = 0 
Query:   96 VSSDGIKKLIKSLRPHKATGPDTIKARFLIEFADEISPALKLIFEASLKQSELPTAWKHSLIVPAYKGNGKCRSNPESYRPISLTSIVCKLLEHILYSKVMSHLTENKVLSELQVGFREKRSCESQLLLTVNDFAKALNNGDQVDSIL-LDFSKAFDKVDHSKLCHKLEHYGVRGSHLSWIKSFLRNRTQQVVVNGKTSKYAEVKSGVPQGTVLGPLLF 313
            ++   I  +I SL   K+ GPD   A F   + +E+ P L  +F++  K+  LP ++  + I+   K  G+  +  E++RPISL +I  K+L  IL +++  H+   K++   QVGF         +  ++N         D+   I+ +D  KAFDK+    +   L   G+ G +L  I++     T  +++NG+  +   +K+G  QG  L PLLF
Sbjct:  453 ITGSEIVAIINSLPTKKSPGPDGFTAEFYQRYKEELVPFLLKLFQSIEKEGILPNSFYEASIILIPKP-GRDTTKKENFRPISLMNIDAKILNKILANRIQQHI--KKLIHHDQVGFIPGMQGWFNIRKSINVIQHINRAKDKNHVIISIDAEKAFDKIQQPFMLKTLNKLGIDGMYLKIIRAIYDKPTANIILNGQKLEAFPLKTGTRQGCPLSPLLF 668
The following BLAST results are available for this feature:
BLAST of TCONS_00001270-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
LORF23.866e-2028.77LINE-1 retrotransposable element ORF2 protein OS=H... [more]
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