TCONS_00001187-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00001187-protein
Unique NameTCONS_00001187-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length295

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00001187-protein ID=TCONS_00001187-protein|Name=TCONS_00001187-protein|organism=Clytia hemisphaerica|type=polypeptide|length=295bp
MADYWKSTGKHYCDFCKCWTADNKPSIQFHEKGKNHQANVKKRLAEIKRN
SIEKRKKDEKSQHMFQEMEKAALAAVQKDMNSSDVSIGKADMRNIVKAHS
KTEESGNDDISNKDIYPWQVMAGPQGTTYYYNATSGESTWVMPEIVKNQL
EKKKRTAEDTSTKTVSKPSKSYSSSTSTASKDPYRAQPKKEEPPEEVRDS
HPLLGGWSTVKRYDNTAQEETSEEQNVKEEQPAEKPTETTEAPENSGTTP
AEPVAGKKFKERQLKTSLATESDAPVAFKKRKFGNRNVRRRNDDD
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_000644XLOC_000644Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00001187TCONS_00001187Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR003604Matrin/U1-like-C_Znf_C2H2
IPR013085U1-CZ_Znf_C2H2
IPR001202WW_dom
IPR000690Matrin/U1-C_Znf_C2H2
IPR013087Znf_C2H2_type
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO:0008270zinc ion binding
GO:0005515protein binding
Vocabulary: Cellular Component
TermDefinition
GO:0005634nucleus
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0005634 nucleus
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0005515 protein binding
molecular_function GO:0008270 zinc ion binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 210..230
NoneNo IPR availableGENE3D2.20.70.10coord: 48..130
e-value: 1.2E-6
score: 27.6
NoneNo IPR availableGENE3D2.20.70.10coord: 131..243
e-value: 3.9E-5
score: 22.8
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 151..295
NoneNo IPR availableCDDcd00201WWcoord: 116..145
e-value: 0.00200737
score: 34.0406
IPR003604Matrin/U1-C-like, C2H2-type zinc fingerSMARTSM00451ZnF_U1_5coord: 8..43
e-value: 7.6E-9
score: 45.4
IPR013085U1-C, C2H2-type zinc fingerPFAMPF06220zf-U1coord: 10..43
e-value: 2.0E-10
score: 40.2
IPR001202WW domainPROSITEPS01159WW_DOMAIN_1coord: 118..143
IPR001202WW domainPROSITEPS50020WW_DOMAIN_2coord: 117..145
score: 10.679
IPR001202WW domainSUPERFAMILY51045WW domaincoord: 117..149
IPR000690Matrin/U1-C, C2H2-type zinc fingerPROSITEPS50171ZF_MATRINcoord: 11..42
score: 10.075
IPR013087Zinc finger C2H2-typeSUPERFAMILY57667beta-beta-alpha zinc fingerscoord: 9..51

Blast
[Close]
BLAST of TCONS_00001187-protein vs. Swiss-Prot (Human)
Match: WBP4 (WW domain-binding protein 4 OS=Homo sapiens GN=WBP4 PE=1 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 1.007e-26
Identity = 67/175 (38.29%), Postives = 94/175 (53.71%), Query Frame = 0 
Query:    1 MADYWKSTGKHYCDFCKCWTADNKPSIQFHEKGKNHQANVKKRLAEIKRNSIEKRKKDEKSQHMFQEMEKAALAAVQKDMNSSDV--SIGKADMRNIVKAHSKTEESGNDDISNKDIYP--------WQVMAGPQGTTYYYNATSGESTWVMPEIVKNQLEKKKRTAEDTSTKTV 165
            MADYWKS  K +CD+CKCW ADN+PS++FHE+GKNH+ NV KR++EIK+ S++K K++EK+   F  ME AAL A Q+D+    +   I +  +  +      T  S       +            W      +G  YYY+  SG S W  PE  +  L+K       T+ KTV
Sbjct:    1 MADYWKSQPKKFCDYCKCWIADNRPSVEFHERGKNHKENVAKRISEIKQKSLDKAKEEEKASKEFAAMEAAALKAYQEDLKRLGLESEILEPSITPVTSTIPPTSTSNQQKEKKEKKKRKKDPSKGRWVEGITSEGYHYYYDLISGASQWEKPEGFQGDLKK-------TAVKTV 168
The following BLAST results are available for this feature:
BLAST of TCONS_00001187-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
WBP41.007e-2638.29WW domain-binding protein 4 OS=Homo sapiens GN=WBP... [more]
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