TCONS_00001051-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00001051-protein
Unique NameTCONS_00001051-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length525

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00001051-protein ID=TCONS_00001051-protein|Name=TCONS_00001051-protein|organism=Clytia hemisphaerica|type=polypeptide|length=525bp
MDFSKAKGRSRRRNKIDDGHLYTNFPNPLMMYNKEPPRGDIALEEFETYA
VDRLKLLREVENINIRFKKNSPDHYTKMKKALVDFSPNYFEKTNPADSKE
FEFKADKEKKEKEMRIKLGEERRKDYVSHFILRLAFARSEDLRRWFLTQE
LELFRFKFTELKQHIQSFLQENQLEYKPIDDTEKNKLANKLKAAMFNAKE
VNFPEMKFYKVPFTSVLDLVRSRKVYLEKGEAYVPETELVSIILGIYRTH
LSQALALTAKKLPYIEEDTRLLPMLKNLSSAYIGDSYTSKKENADDKLSL
ANMEEDVVKSYPICMRNLHEGLRKDHHLKHWGRLQYGLFIKAAGLSLEEA
LLFWRSEFTKKMDLDKFEKQYAYNVRHSYGKEGKRADYTPYSCMKIITTN
QPGPGDFHGCPFKHSDNDILKRRLQNYKIPNDSIKEILDLAKQQHYQIAC
SRYFEVTHKLPNGVTMINHPNQYFDESKKFLSGEKSFTNILKEEKVMVKT
EVKAEPPPPPQEAMDVNFDEDMEMC
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_000596XLOC_000596Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00001051TCONS_00001051Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR007238DNA_primase_lsu_euk/arc
IPR016558DNA_primase_lsu_euk
Vocabulary: Molecular Function
TermDefinition
GO:0003896DNA primase activity
GO:0016779nucleotidyltransferase activity
Vocabulary: Biological Process
TermDefinition
GO:0006269DNA replication, synthesis of RNA primer
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006269 DNA replication, synthesis of RNA primer
molecular_function GO:0003896 DNA primase activity
molecular_function GO:0016779 nucleotidyltransferase activity
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR007238DNA primase large subunit, eukaryotic/archaealPFAMPF04104DNA_primase_lrgcoord: 207..474
e-value: 6.5E-91
score: 304.3
IPR016558DNA primase, large subunit, eukaryoticPIRSFPIRSF009449DNA_primase_largecoord: 2..503
e-value: 9.8E-162
score: 537.0
IPR016558DNA primase, large subunit, eukaryoticCDDcd07322PriL_PriS_Eukaryoticcoord: 31..477
e-value: 0.0
score: 556.105

Blast
[Close]
BLAST of TCONS_00001051-protein vs. Swiss-Prot (Human)
Match: PRI2 (DNA primase large subunit OS=Homo sapiens GN=PRIM2 PE=1 SV=2)

HSP 1 Score: 441.425 bits (1134), Expect = 6.091e-151
Identity = 230/517 (44.49%), Postives = 334/517 (64.60%), Query Frame = 0 
Query:    1 MDFSKAKGRSRRRNKIDDGHLYTNFPNPLMMYNKEPPRGDIALEEFETYAVDRLKLLREVENINIRFKKNSPDHYTKMKKALVDFSPNYFEKTNPADSKEFEFKADKEKKEKEMRIKLGEERRKDYVSHFILRLAFARSEDLRRWFLTQELELFRFKFTEL-KQHIQSFLQENQLEYKPIDDTEKNKLANKLKAAMFNAKEVNFPEMKFYKVPFTSVLDLVRSRKVYLEKGEAYVPETELVSIILGIYRTHLSQALALTAKKLPYIEEDTRLLPMLKNLSSAYIGDSYTSKKENADDKLSLANMEEDVVKSYPICMRNLHEGLRKDHHLKHWGRLQYGLFIKAAGLSLEEALLFWRSEFTK-KMDLDKFEKQYAYNVRHSYGKEGKRADYTPYSCMKIITTNQPGPGDFHGCPFKHSDNDILKRRLQNYKIPNDSIKEILDLAKQQHYQIACSRYFEVTHKLPNGVTMINHPNQYFDESKKFLSGEKSFTNILKEEKVMVKTEVKAEPPPPPQEAMD 515
            M+FS   GR  R+ ++       ++P+ L  Y  +PP  +I+L EFE  A+DR+KLL+ VEN+ + + K +  + +K++  L     +Y                 +E  E E      E RR+D++SHFILRLA+ +SE+LRRWF+ QE++L RF+F+ L K  IQ FL+++QL+++ I D EK     ++ A+  +   +       YK+PF   LDL R RKVYLE G AYVP  ++V+IIL  +R  LS+ALALTA+ LP ++ D RL P+L +LS +Y G  Y+++      K+SL  ++    KS+P CMR LH+ LR++HHL+H GR+QYGLF+K  GL+LE+AL FW+ EF K KMD DKF+K Y+YN+RHS+GKEGKR DYTP+SC+KII +N P  GD+HGCPF+HSD ++LK++LQ+YKI    I +ILDL K  HYQ+AC +YFE+ H + +    +NHPNQ+F ES++ L+G K     +K+E +  +T    +P P  Q+  D
Sbjct:    1 MEFS---GRKWRKLRLAGDQRNASYPHCLQFY-LQPPSENISLIEFENLAIDRVKLLKSVENLGVSYVKGTEQYQSKLESELRKLKFSY-----------------RENLEDEY-----EPRRRDHISHFILRLAYCQSEELRRWFIQQEMDLLRFRFSILPKDKIQDFLKDSQLQFEAISDEEKTLREQEIVASSPSLSGLKLGFESIYKIPFADALDLFRGRKVYLEDGFAYVPLKDIVAIILNEFRAKLSKALALTARSLPAVQSDERLQPLLNHLSHSYTGQDYSTQGNVG--KISLDQIDLLSTKSFPPCMRQLHKALRENHHLRHGGRMQYGLFLKGIGLTLEQALQFWKQEFIKGKMDPDKFDKGYSYNIRHSFGKEGKRTDYTPFSCLKIILSNPPSQGDYHGCPFRHSDPELLKQKLQSYKISPGGISQILDLVKGTHYQVACQKYFEMIHNVDDCGFSLNHPNQFFCESQRILNGGKD----IKKEPIQPET---PQPKPSVQKTKD 482
The following BLAST results are available for this feature:
BLAST of TCONS_00001051-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
PRI26.091e-15144.49DNA primase large subunit OS=Homo sapiens GN=PRIM2... [more]
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