TCONS_00000985-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00000985-protein
Unique NameTCONS_00000985-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length326

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00000985-protein ID=TCONS_00000985-protein|Name=TCONS_00000985-protein|organism=Clytia hemisphaerica|type=polypeptide|length=326bp
MKPLLLHGHERSITQIKYNKEGDLLFSSAKDNRPTVWYSVNGERLGTYNG
HGGAVWCLDPRWDSKYLLTGSADNSAKLWDIETGTELKSLGTGSAVRTCG
FSYSGKQFFYSTDKAMGRQCEIYFYDVNNALTGEGNPDPYLVIESKDSKV
TAALWGPLDEYILTGHDDGTITKWCSKTGDKIKAVKPHSEKVNDIQKNEN
EMMFVTASKDNYSKLFDTETMQVLKEYKTERPVNSAAVSPIRDQVVLGGG
QEAMEVTTTSARVGKFDARFFHMIFEEEIGRVKGHFGPINSLAFHPDGKS
YSSGGEDGYVRNHVFDKSYYEFDFEY
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_000573XLOC_000573Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00000985TCONS_00000985Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001680WD40_repeat
IPR015943WD40/YVTN_repeat-like_dom
IPR019775WD40_repeat_CS
IPR027525eIF3i
IPR017986WD40_repeat_dom
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO:0003743translation initiation factor activity
Vocabulary: Cellular Component
TermDefinition
GO:0005852eukaryotic translation initiation factor 3 complex
GO:0005737cytoplasm
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0005737 cytoplasm
cellular_component GO:0005852 eukaryotic translation initiation factor 3 complex
molecular_function GO:0005515 protein binding
molecular_function GO:0003743 translation initiation factor activity
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
ZOOM
x 1
POSITION
0
50100150200250300Score = 14.251Score = 11.511Score = 9.105Score = 9.172Expect = 6.8E-58 / Score = 195.7Score = 75.334Score = 26.815Score = SequenceSM00320PF00400PS50082PS50082PS50082PS50082PS50082G3DSA:2.130.10.10PS00678MF_03008PS50294SSF50978
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001680WD40 repeatSMARTSM00320WD40_4coord: 41..80
e-value: 1.0E-7
score: 41.6
coord: 1..38
e-value: 30.0
score: 7.7
coord: 83..126
e-value: 450.0
score: 0.2
coord: 275..314
e-value: 0.076
score: 22.1
coord: 178..217
e-value: 0.2
score: 20.7
coord: 136..175
e-value: 0.59
score: 18.4
IPR001680WD40 repeatPFAMPF00400WD40coord: 43..80
e-value: 9.8E-7
score: 29.3
coord: 279..311
e-value: 1.2E-4
score: 22.7
IPR001680WD40 repeatPROSITEPS50082WD_REPEATS_2coord: 48..89
score: 14.251
IPR001680WD40 repeatPROSITEPS50082WD_REPEATS_2coord: 6..47
score: 11.511
IPR001680WD40 repeatPROSITEPS50082WD_REPEATS_2coord: 143..184
score: 9.105
IPR001680WD40 repeatPROSITEPS50082WD_REPEATS_2coord: 282..311
score: 9.974
IPR001680WD40 repeatPROSITEPS50082WD_REPEATS_2coord: 185..226
score: 9.172
IPR015943WD40/YVTN repeat-like-containing domainGENE3D2.130.10.10coord: 1..325
e-value: 6.8E-58
score: 195.7
IPR019775WD40 repeat, conserved sitePROSITEPS00678WD_REPEATS_1coord: 67..81
IPR027525Eukaryotic translation initiation factor 3 subunit IHAMAPMF_03008eIF3icoord: 1..324
score: 75.334
IPR017986WD40-repeat-containing domainPROSITEPS50294WD_REPEATS_REGIONcoord: 6..226
score: 26.815
IPR017986WD40-repeat-containing domainSUPERFAMILY50978WD40 repeat-likecoord: 4..311

Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00000985-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
ZOOM
x 1
POSITION
0
MKPLLLHGHERSITQIKYNKEGDLLFSSAKDNRPTVWYSVNGERLGTYNGHGGAVWCLDPRWDSKYLLTGSADNSAKLWDIETGTELKSLGTGSAVRTCGFSYSGKQFFYSTDKAMGRQCEIYFYDVNNALTGEGNPDPYLVIESKDSKVTAALWGPLDEYILTGHDDGTITKWCSKTGDKIKAVKPHSEKVNDIQKNENEMMFVTASKDNYSKLFDTETMQVLKEYKTERPVNSAAVSPIRDQVVLGGGQEAMEVTTTSARVGKFDARFFHMIFEEEIGRVKGHFGPINSLAFHPDGKSYSSGGEDGYVRNHVFDKSYYEFDFEY50100150200250300Expect = 7.48e-158 / Id = 64.00SequenceEIF3I
Match NameE-valueIdentityDescription
EIF3I7.476e-15864.00Eukaryotic translation initiation factor 3 subunit... [more]
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