TCONS_00000765-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00000765-protein
Unique NameTCONS_00000765-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length558

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00000765-protein ID=TCONS_00000765-protein|Name=TCONS_00000765-protein|organism=Clytia hemisphaerica|type=polypeptide|length=558bp
SGLDRSLRYSSIVRGLGCTELSQGSVISRANSMRVEVTQLKLPPITCIAA
ESARAYDWDNVVTCHLGHGKAHTWNSQNRCIGKYTFKCKSKDNQKIVANC
CNVSSCGNFTVIGYDNGQIERYNLQSGLDRGSVKAHEKTIRGLHISSANF
ALISTSADKTIKFWRFKDFCLDTVVQCESAVAISKLHRESSLLAVAFDDY
TIQIYDIDTKAVVRSFFGHRNVITDISWSLDARWLVSSSIDGTIKTWDVP
TGRLIDCFLVEEAPTSVAFSPSGEMLASTHQDNVGIFLWANKIKYSGGYP
TPLPNDFQPSTISLPQTIVDEQGGTEDMEGEESIETKEVNEEELTDYITP
EQLSEELVTLSMLPDSRWKNLVNLDLIKLRNKPKEPPKKPKAAPFFLPSV
AGLETKFDIQKDDEKAENVDKSRILSNKNFESDSILLRILAKDPETCTPL
VELLKEMGPSDIEAEFRMLGPEMNGTIDGLVDLLKAFVILLKSGKYYELV
QAYITLFLKLHGDLVPKHEGLRQQADELITVIEDTWQDCQKLLHQSTCLV
KYFKSATV
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_000473XLOC_000473Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00000765TCONS_00000765Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001680WD40_repeat
IPR007319SSU_processome_Utp21
IPR015943WD40/YVTN_repeat-like_dom
IPR019775WD40_repeat_CS
IPR017986WD40_repeat_dom
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
Vocabulary: Biological Process
TermDefinition
GO:0006364rRNA processing
Vocabulary: Cellular Component
TermDefinition
GO:0032040small-subunit processome
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006364 rRNA processing
cellular_component GO:0032040 small-subunit processome
molecular_function GO:0005515 protein binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001680WD40 repeatSMARTSM00320WD40_4coord: 209..248
e-value: 1.6E-8
score: 44.3
coord: 167..206
e-value: 40.0
score: 6.9
coord: 251..290
e-value: 0.85
score: 17.4
coord: 126..165
e-value: 0.024
score: 23.8
IPR001680WD40 repeatPFAMPF00400WD40coord: 213..248
e-value: 1.2E-5
score: 25.9
coord: 132..164
e-value: 0.16
score: 12.8
IPR001680WD40 repeatPROSITEPS50082WD_REPEATS_2coord: 216..257
score: 14.652
IPR001680WD40 repeatPROSITEPS50082WD_REPEATS_2coord: 133..164
score: 10.375
IPR007319Small-subunit processome, Utp21PFAMPF04192Utp21coord: 337..554
e-value: 8.9E-61
score: 205.3
NoneNo IPR availableGENE3D1.10.10.670coord: 250..296
e-value: 1.3E-8
score: 34.2
NoneNo IPR availableGENE3D2.80.10.50coord: 172..249
e-value: 9.0E-19
score: 67.0
IPR015943WD40/YVTN repeat-like-containing domainGENE3D2.130.10.10coord: 20..169
e-value: 1.1E-11
score: 44.0
IPR019775WD40 repeat, conserved sitePROSITEPS00678WD_REPEATS_1coord: 235..249
IPR017986WD40-repeat-containing domainPROSITEPS50294WD_REPEATS_REGIONcoord: 133..257
score: 20.962
IPR017986WD40-repeat-containing domainSUPERFAMILY50978WD40 repeat-likecoord: 46..289

Blast
[Close]
BLAST of TCONS_00000765-protein vs. Swiss-Prot (Human)
Match: WDR36 (WD repeat-containing protein 36 OS=Homo sapiens GN=WDR36 PE=1 SV=1)

HSP 1 Score: 407.912 bits (1047), Expect = 5.283e-132
Identity = 223/533 (41.84%), Postives = 332/533 (62.29%), Query Frame = 0 
Query:   40 LKLPPITCIAAESARAYDWDNVVTCHLGHGKAHTWNSQNRCIGKYTFKCKSKDNQKIVANCCNVSSCGNFTVIGYDNGQIERYNLQSGLDRGSV---KAHEKTIRGLHISSANFALISTSADKTIKFWRFKDFCLDTVVQCESAVAISKLHRESSLLAVAFDDYTIQIYDIDTKAVVRSFFGHRNVITDISWSLDARWLVSSSIDGTIKTWDVPTGRLIDCFLVEEAPTSVAFSPSGEMLASTHQDNVGIFLWANKIKYSGGYPTPLPNDFQPSTISLPQTIVDEQGGTEDME-GEESIETKEVNEEELTDYITPEQLSEELVTLSMLPDSRWKNLVNLDLIKLRNKPKEPPKKPKAAPFFLPSVAGLETKFDIQKDDEKAENVDKSRILSNKNFESDSILLRILAKDPETCTPLVE------------LLKEMGPSDIEAEFRMLGPEMNGTIDGLVDLLKAFVILLKSGKYYELVQAYITLFLKLHGDLVPKHEGLRQQADELITVIEDTWQDCQKLLHQSTCLVKYFKSA 556
            ++LPPIT  AAE AR  DWD ++ CH G     TWN Q   IG Y  K K      I A   +++SCGNF VIG  +G ++ YN+QSG+ RGS    +AH+ ++RG+ +   N   ++T ++  +KFW FK+  L   V   S+  I  LHR+S +L +A DD++I + DI+T+ +VR F GH+  I D+++S D RWL+S+++D +I+TWD+P+G LIDCFL++ AP +V+ SP+G+ LA++H D++GI+LW+N   YS     PLP D+ PS + LP T       T+D+E  EE++E      +EL +Y +PEQL+E+LVTLS+LP+SRWKNL+NLD+IK +NKPKEPPK PK+APFF+P++ GL  ++      E+  +  +S++++          L +LA+  + C  L E            LLKE GPS IE E R L P+  G+I+ +   LK   ++L   + +EL QAY+ LFLKLH  ++P    L ++   L + +E+ W   Q L +QS C++ Y KSA
Sbjct:  439 VRLPPITKFAAEEARESDWDGIIACHQGKLSCSTWNYQKSTIGAYFLKPKELKKDDITATAVDITSCGNFAVIGLSSGTVDVYNMQSGIHRGSFGKDQAHKGSVRGVAVDGLNQLTVTTGSEGLLKFWNFKNKILIHSVSLSSSPNIMLLHRDSGILGLALDDFSISVLDIETRKIVREFSGHQGQINDMAFSPDGRWLISAAMDCSIRTWDLPSGCLIDCFLLDSAPLNVSMSPTGDFLATSHVDHLGIYLWSNISLYSVVSLRPLPADYVPSIVMLPGTC-----QTQDVEVSEETVEP----SDELIEYDSPEQLNEQLVTLSLLPESRWKNLLNLDVIKKKNKPKEPPKVPKSAPFFIPTIPGLVPRY---AAPEQNNDPQQSKVVN----------LGVLAQKSDFCLKLEEGLVNNKYDTALNLLKESGPSGIETELRSLSPDCGGSIEVMQSFLKMIGMMLDRKRDFELAQAYLALFLKLHLKMLPSEPVLLEEITNLSSQVEENWTHLQSLFNQSMCILNYLKSA 949
The following BLAST results are available for this feature:
BLAST of TCONS_00000765-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
WDR365.283e-13241.84WD repeat-containing protein 36 OS=Homo sapiens GN... [more]
back to top