TCONS_00000734-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00000734-protein
Unique NameTCONS_00000734-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length741

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00000734-protein ID=TCONS_00000734-protein|Name=TCONS_00000734-protein|organism=Clytia hemisphaerica|type=polypeptide|length=741bp
MLSERFFIISVEIFTVLICLVISNISTTTDNLNFYVTTGNSSSNVNSVCL
SEPWKCKLDYHLIHNGNQLLAITNQDIHKTLFNKSTHTNTKSFFVTYGVC
HHIRGFYIMKLSGFLDIYCSPLSIEPFITNDIISHFSHLEDLHILLHPDL
LTVFLDIMDQEITLRNFFFYIVAISEKEMETLKMQFPHLMLERSGTRAAA
NMLSDFIASVEQNQRFTTKKNSLHQRRTVDRRTNSLRKLALSKRKKRLIR
VVTTWFPPYVEEMTSAIFPKCSPGHQCDIPVRDDNNTKTLSWRKSCCSGM
SVEIFETLARELDFKYTLYAVEDGKFGSEENGTWNGMVGDLVRDKADMAI
NVLSIVSKRATVVHFTSHYLESSFGILRIKQPVIPFPSWEFLKPLTVELE
LVILSCTLVSILLIMMLENVGYLMKANQRFSFREVMTYVFGLTFQRDMGG
TNPRMWSGRLAALGYASAMTIIMSIYTARITANSIAQNVNDDFKGFQDER
FRNPTSKYKFSVVGGQGYSQELYFENHNDPAFRRMHEFMKPYFVDDDEVG
VRMLMEGKFQAYITELGSFEAYFPPMMARIGCSQEIEFYPKSVGKHGLGF
AYRKDFPFGKTISNLMVKMRQHGDFEDLKIRWYSSSPCNGIKPVEQFNWT
YFSGIMVIVGVMMAIGICINLFEHSFVFIRKHYLKHKEESDLKHFSEMNT
NGLKHHQNGGNDEGLVKANRNLSLFLEDLETRIAEKRNRLI
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_000461XLOC_000461Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00000734TCONS_00000734Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001320Iontro_rcpt
IPR019594Glu/Gly-bd
Vocabulary: Molecular Function
TermDefinition
GO:0004970ionotropic glutamate receptor activity
GO:0005234extracellular-glutamate-gated ion channel activity
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016020 membrane
molecular_function GO:0005234 extracellular-glutamate-gated ion channel activity
molecular_function GO:0004970 ionotropic glutamate receptor activity
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 719..741
NoneNo IPR availableGENE3D1.10.287.70coord: 387..565
e-value: 6.3E-10
score: 38.1
NoneNo IPR availableGENE3D3.40.190.10coord: 244..381
e-value: 5.7E-23
score: 80.5
NoneNo IPR availableSUPERFAMILY53850Periplasmic binding protein-like IIcoord: 497..638
coord: 246..381
IPR001320Ionotropic glutamate receptorSMARTSM00079GluR_14coord: 278..635
e-value: 1.6E-9
score: 47.6
IPR001320Ionotropic glutamate receptorPFAMPF00060Lig_chancoord: 402..604
e-value: 7.4E-9
score: 35.5
IPR019594Ionotropic glutamate receptor, L-glutamate and glycine-binding domainSMARTSM00918Lig_chan_Glu_bd_2coord: 280..343
e-value: 4.4E-15
score: 66.1
IPR019594Ionotropic glutamate receptor, L-glutamate and glycine-binding domainPFAMPF10613Lig_chan-Glu_bdcoord: 291..378
e-value: 1.7E-22
score: 79.7

Blast
[Close]
BLAST of TCONS_00000734-protein vs. Swiss-Prot (Human)
Match: NMD3A (Glutamate receptor ionotropic, NMDA 3A OS=Homo sapiens GN=GRIN3A PE=1 SV=2)

HSP 1 Score: 169.088 bits (427), Expect = 2.479e-43
Identity = 127/474 (26.79%), Postives = 208/474 (43.88%), Query Frame = 0 
Query:  249 IRVVTTWFPPYVEEMTSAIFPKCSPGHQCDIPVRDD--------------NNTKTLSWRKSCCSGMSVEIFETLARELDFKYTLYAVEDGKFGSEENGTWNGMVGDLVRDKADMAINVLSIVSKRATVVHFTSHYLESSFGIL-RIKQPVIPFPSWEFLKPLTVELEL---VILSCTLVSILLIMMLENVGYLMKANQR---FSFREVMTYVFGLTFQRDMGGTNPRMWSGRLAALGYASAMTIIMSIYTARITANSIAQNVNDDFKGFQDERFRNPTSKYKFSVVGGQGYSQELYFENHNDPAFRRMHEFMKPYFVDDDEVGVRMLMEG--KFQAYITELGSFEAYFPPMMARIGCSQEIEFYPKSVGKHGLGFAYRKDFPFGKTISNLMVKMRQHGDFEDLKIRWYSSSPCN----GIKPVEQFNWTYFSGIMVIVGVMMAIGICINLFEHSFVFIRKHYLKHKEESDLKHF 695
            +RVVT    P+V          C  G  C  P+ +D              N+T  + ++K CC G  +++ E +A +++F + LY V DGK+G+ +NG W G+VGDL+R  A MA+   SI + R+ V+ FTS +  +S GIL R +    P  +  F+ PL   + L   V L  T V + L       G   K   R   FSF   +   + L F R +    P+ W+GR     +A      +S YTA + A  + + + ++  G  D +  +P+  ++F  V      +E   E++   +F  MHE+M+ Y V     GV  L     K  A+I +    +         I    ++    K     G G     + P    IS L+ + + HG  + L  +WY   PC      +    Q    +FSG+ V++ +   + I   + EH  +  R    + K +S L+++
Sbjct:  515 LRVVTLIEHPFVFTREVDDEGLCPAGQLCLDPMTNDSSTLDSLFSSLHSSNDTVPIKFKK-CCYGYCIDLLEKIAEDMNFDFDLYIVGDGKYGAWKNGHWTGLVGDLLRGTAHMAVTSFSINTARSQVIDFTSPFFSTSLGILVRTRDTAAPIGA--FMWPLHWTMWLGIFVALHITAVFLTLYEWKSPFGLTPKGRNRSKVFSFSSALNICYALLFGRTVAIKPPKCWTGRFLMNLWAIFCMFCLSTYTANLAAVMVGEKIYEELSGIHDPKLHHPSQGFRFGTV------RESSAEDYVRQSFPEMHEYMRRYNVPATPDGVEYLKNDPEKLDAFIMDKALLD-----YEVSIDADCKLLTVGKPFAIEGYGIGLPPNSPLTANISELISQYKSHGFMDMLHDKWYRVVPCGKRSFAVTETLQMGIKHFSGLFVLLCIGFGLSILTTIGEH--IVYRLLLPRIKNKSKLQYW 972
The following BLAST results are available for this feature:
BLAST of TCONS_00000734-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
NMD3A2.479e-4326.79Glutamate receptor ionotropic, NMDA 3A OS=Homo sap... [more]
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