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Sequence
The following sequences are available for this feature:
polypeptide sequence >TCONS_00000577-protein ID=TCONS_00000577-protein|Name=TCONS_00000577-protein|organism=Clytia hemisphaerica|type=polypeptide|length=456bp
MRECISIHIGQAGCQIGNACWELYCMEHNIKPDGLMNEEGSQRDDESFST
FFNETGNGKHVPRALFLDLEPNVIDEIRTGAYSKLYHPEQLISGSEDAAN
NYARGHYTVGKQMIDDVLDKVRRLTENCTGLQGFLMFHSFGGGTGSGFTS
LLMERITADYSRKSKLEFAIYPAPRVSTAVVEPYNACLTTHTTLDNSDCA
FMVDNEAIYDICRRNLDIDRPSYTNLNRLIGQIVSSITASLRFDGSLNVD
LNEFQTNLVPYPRIHFPVATIAPVLSAAKAYHEKISVSEITHQCFEPANQ
MVKCDPRLGKYMAVCLLYRGDVVPKDVNTAIAHLKTKKNIQFVDWCPTGF
KVGINYQPPTTVPGGDLAKVPRSVCMLSNTTAVAEAWARLDHKFDLMYAK
RAFIHWYVGEGMEEGEFAEARENMASLERDYEEVASDSVADDYDEDEEGE
GSGEEY Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
This polypeptide derives from the following transcript feature(s):
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0005525 | GTP binding |
| GO:0005200 | structural constituent of cytoskeleton |
| GO:0003924 | GTPase activity |
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0005874 | microtubule |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0007017 | microtubule-based process |
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0007017 |
microtubule-based process |
| cellular_component |
GO:0005874 |
microtubule |
| molecular_function |
GO:0003924 |
GTPase activity |
| molecular_function |
GO:0005525 |
GTP binding |
| molecular_function |
GO:0005200 |
structural constituent of cytoskeleton |
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
| IPR Term | IPR Description | Source | Source Term | Source Description | Alignment |
|---|
| None | No IPR available | COILS | Coil | Coil | coord: 417..437 |
| None | No IPR available | GENE3D | 1.10.287.600 | | coord: 383..454
e-value: 1.3E-29
score: 101.7 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 428..456 |
| None | No IPR available | CDD | cd02186 | alpha_tubulin | coord: 2..434
e-value: 0.0
score: 833.725 |
| IPR002452 | Alpha tubulin | PRINTS | PR01162 | ALPHATUBULIN | coord: 44..57
score: 59.48
coord: 119..127
score: 43.42
coord: 147..159
score: 60.89
coord: 384..400
score: 83.89
coord: 160..171
score: 66.53
coord: 346..359
score: 93.16
coord: 213..225
score: 78.73
coord: 273..288
score: 65.13
coord: 87..100
score: 86.97
coord: 18..33
score: 77.78
coord: 359..378
score: 77.86
coord: 320..341
score: 71.47
coord: 421..437
score: 62.48 |
| IPR000217 | Tubulin | PRINTS | PR01161 | TUBULIN | coord: 133..151
score: 68.74
coord: 379..407
score: 53.56
coord: 52..71
score: 63.16
coord: 94..105
score: 62.68
coord: 152..173
score: 37.12
coord: 177..190
score: 67.87
coord: 107..131
score: 50.6
coord: 10..30
score: 62.18
coord: 191..211
score: 55.99 |
| IPR003008 | Tubulin/FtsZ, GTPase domain | SMART | SM00864 | Tubulin_4 | coord: 48..245
e-value: 5.7E-70
score: 248.4 |
| IPR003008 | Tubulin/FtsZ, GTPase domain | GENE3D | 3.40.50.1440 | | coord: 1..263
e-value: 7.9E-123
score: 408.5 |
| IPR003008 | Tubulin/FtsZ, GTPase domain | PFAM | PF00091 | Tubulin | coord: 3..212
e-value: 3.4E-64
score: 216.6 |
| IPR003008 | Tubulin/FtsZ, GTPase domain | SUPERFAMILY | 52490 | Tubulin nucleotide-binding domain-like | coord: 1..243 |
| IPR018316 | Tubulin/FtsZ, 2-layer sandwich domain | SMART | SM00865 | Tubulin_C_4 | coord: 247..392
e-value: 4.3E-51
score: 185.7 |
| IPR018316 | Tubulin/FtsZ, 2-layer sandwich domain | GENE3D | 3.30.1330.20 | | coord: 264..382
e-value: 3.1E-55
score: 184.9 |
| IPR018316 | Tubulin/FtsZ, 2-layer sandwich domain | PFAM | PF03953 | Tubulin_C | coord: 262..390
e-value: 4.8E-48
score: 162.4 |
| IPR017975 | Tubulin, conserved site | PROSITE | PS00227 | TUBULIN | coord: 141..147 |
| IPR008280 | Tubulin/FtsZ, C-terminal | SUPERFAMILY | 55307 | Tubulin C-terminal domain-like | coord: 245..437 |
Blast
BLAST of TCONS_00000577-protein vs. Swiss-Prot (Human)
Match: TBA1C (Tubulin alpha-1C chain OS=Homo sapiens GN=TUBA1C PE=1 SV=1) HSP 1 Score: 753.821 bits (1945), Expect = 0.000e+0 Identity = 362/457 (79.21%), Postives = 413/457 (90.37%), Query Frame = 0 Query: 1 MRECISIHIGQAGCQIGNACWELYCMEHNIKPDGLM-NEEGSQRDDESFSTFFNETGNGKHVPRALFLDLEPNVIDEIRTGAYSKLYHPEQLISGSEDAANNYARGHYTVGKQMIDDVLDKVRRLTENCTGLQGFLMFHSFGGGTGSGFTSLLMERITADYSRKSKLEFAIYPAPRVSTAVVEPYNACLTTHTTLDNSDCAFMVDNEAIYDICRRNLDIDRPSYTNLNRLIGQIVSSITASLRFDGSLNVDLNEFQTNLVPYPRIHFPVATIAPVLSAAKAYHEKISVSEITHQCFEPANQMVKCDPRLGKYMAVCLLYRGDVVPKDVNTAIAHLKTKKNIQFVDWCPTGFKVGINYQPPTTVPGGDLAKVPRSVCMLSNTTAVAEAWARLDHKFDLMYAKRAFIHWYVGEGMEEGEFAEARENMASLERDYEEVASDSVADDYDEDEEGEGSGEEY 456
MRECISIH+GQAG QIGNACWELYC+EH I+PDG M +++ D+SF+TFF+ETG GKHVPRA+F+DLEP VIDE+RTG Y +L+HPEQLI+G EDAANNYARGHYT+GK++ID VLD++R+L + CTGLQGFL+FHSFGGGTGSGFTSLLMER++ DY +KSKLEF+IYPAP+VSTAVVEPYN+ LTTHTTL++SDCAFMVDNEAIYDICRRNLDI+RP+YTNLNRLI QIVSSITASLRFDG+LNVDL EFQTNLVPYPRIHFP+AT APV+SA KAYHE+++V+EIT+ CFEPANQMVKCDPR GKYMA CLLYRGDVVPKDVN AIA +KTK+ IQFVDWCPTGFKVGINYQPPT VPGGDLAKV R+VCMLSNTTAVAEAWARLDHKFDLMYAKRAF+HWYVGEGMEEGEF+EARE+MA+LE+DYEEV +DS +GE GEEY
Sbjct: 1 MRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDLVLDRIRKLADQCTGLQGFLVFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFSIYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLISQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLTVAEITNACFEPANQMVKCDPRHGKYMACCLLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAVAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDMAALEKDYEEVGADSA--------DGEDEGEEY 449
The following BLAST results are available for this feature:
BLAST of TCONS_00000577-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 ( Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
| Match Name | E-value | Identity | Description | |
|---|
| TBA1C | 0.000e+0 | 79.21 | Tubulin alpha-1C chain OS=Homo sapiens GN=TUBA1C P... | [more] |
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