TCONS_00000534-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00000534-protein
Unique NameTCONS_00000534-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length528

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00000534-protein ID=TCONS_00000534-protein|Name=TCONS_00000534-protein|organism=Clytia hemisphaerica|type=polypeptide|length=528bp
FSTKITIYRNKKIKEIMESWEEIEQAADDGRHELHLNGDVISSKLERNEM
KLPNKLFELVALNYLEISDTSLIEIPDDMAKLTNLINLALHRNSIEKVGD
FFNHLPKLKFFDMSFNKLTSLPEQLNLGTVHTLNLSNNELASLGDLSGAV
NLSILHIEHNELEELPTGLVTLKHLLEVHASNNLINTLPDDLHTFPALKL
FDVSENKLKEVPHSMSQCQRLKTLKLEGNPLKDNRLRKMTTQCNTRAILE
YIAKQSGGDGGKKGKKGKKGKNQPVKEEAEENVRRIVITPNTDDEKRVIC
DASVKDVRPYLCCTVIKNLDLSDEIVFKNFLSLQTKLHENECDMRTRATI
ATHNATGLKFPLVFKASHVGQTVIHALGKKKQCNATTLIQNLKDERDALK
QKKKRQPKTGLYKFIELVDGQEMIASVRNQDGDVISLPPITNGEKTKIGA
SVGDVFIEISSPVSIAQCKYVMEELIKKMFQQNFNSDMESDEGLWIEPIR
VVDENEDLRIVYPSKIDIDFSNIPVKRL
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_000325XLOC_000325Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00000534TCONS_00000534Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR003591Leu-rich_rpt_typical-subtyp
IPR001611Leu-rich_rpt
IPR032675L_dom-like
IPR020825Phe-tRNA_synthase_B3/B4
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 385..405
NoneNo IPR availableSMARTSM00364LRR_bac_2coord: 195..214
e-value: 160.0
score: 4.5
coord: 172..191
e-value: 57.0
score: 8.0
coord: 105..124
e-value: 15.0
score: 12.4
coord: 127..146
e-value: 150.0
score: 4.7
coord: 149..168
e-value: 30.0
score: 10.1
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 256..283
IPR003591Leucine-rich repeat, typical subtypeSMARTSM00369LRR_typ_2coord: 195..218
e-value: 15.0
score: 11.9
coord: 82..104
e-value: 60.0
score: 6.9
coord: 172..193
e-value: 110.0
score: 4.8
coord: 105..128
e-value: 0.095
score: 21.8
IPR001611Leucine-rich repeatPFAMPF13855LRR_8coord: 62..118
e-value: 6.2E-7
score: 29.0
coord: 180..231
e-value: 1.5E-6
score: 27.8
IPR001611Leucine-rich repeatPROSITEPS51450LRRcoord: 107..128
score: 7.165
IPR001611Leucine-rich repeatPROSITEPS51450LRRcoord: 84..105
score: 6.21
IPR001611Leucine-rich repeatPROSITEPS51450LRRcoord: 129..150
score: 7.042
IPR001611Leucine-rich repeatPROSITEPS51450LRRcoord: 220..240
score: 5.094
IPR001611Leucine-rich repeatPROSITEPS51450LRRcoord: 174..195
score: 5.163
IPR001611Leucine-rich repeatPROSITEPS51450LRRcoord: 151..173
score: 6.565
IPR001611Leucine-rich repeatPROSITEPS51450LRRcoord: 197..218
score: 5.356
IPR032675Leucine-rich repeat domain, L domain-likeGENE3D3.80.10.10coord: 7..138
e-value: 2.1E-18
score: 65.5
IPR032675Leucine-rich repeat domain, L domain-likeGENE3D3.80.10.10coord: 139..287
e-value: 2.5E-22
score: 78.3
IPR032675Leucine-rich repeat domain, L domain-likeSUPERFAMILY52058L domain-likecoord: 313..322
coord: 51..241
IPR020825Phenylalanyl-tRNA synthetase, B3/B4GENE3D3.50.40.10coord: 338..467
e-value: 3.1E-10
score: 39.3

Blast
[Close]
BLAST of TCONS_00000534-protein vs. Swiss-Prot (Human)
Match: LRC47 (Leucine-rich repeat-containing protein 47 OS=Homo sapiens GN=LRRC47 PE=1 SV=1)

HSP 1 Score: 255.373 bits (651), Expect = 6.645e-78
Identity = 191/569 (33.57%), Postives = 288/569 (50.62%), Query Frame = 0 
Query:   16 IMESWEEIEQAADDGRHELHLNGDVISSKLERNEMKLPNKLFELVALNYLEISDTSLIEIPDD--MAKLTNLINLALHRNSI-EKVGDFFNHLPKLKFFDMSFNKLTSLPEQLNLGT--------VHTLNLSNNELASL-GDLS-GAVNLSILHIEHNELEELPTGLV---TLKHLLEVHASNNLINTLPDDLHTFPALKLFDVSENKLKEVPHSMSQCQRLKTLKLEGNPLKDNRLRKMTTQCNTRAILEYI--------AKQSGGDGGKKGKK------------GKKGKNQPVKEEAEENVRRIVITPNTDDEKRVICDASVKDVRPYLCCTVIKNLDLSDEIVFKNFLSLQTKLHENECDMRTRATIATHNATGLKFPLVFKASHVGQTVIHALGKKKQCNATTLIQNLKDERDALKQKKKRQPKTGLYKFIELVDGQEMIASVRNQDGDVISLPPITNGEKTKIGASVGDVFIEISSPVSIAQCKYVMEELIKKMFQ----------QNFNSDMESD-----------------EG---LWIEPIRVVDENEDLRIVYPSKIDI 518
            + ESW E+E A  + R EL L G  +  ++     +LP +LF L  L+YLE+S    +  P       L  L +L L RN++   +      LP L+  D+S N L +LP    LG         + +LNLS N L  L  DL+  A  L  L++  N L+  P  L     L  L E+ A++N +  L  D+    +LK  D+S N+L E+P  ++ C +LK +   GN L+D RL KM + C TR+ILEY+          +   +G +K +             G  G+ Q V +     +R + ++ N      V     V+DVRPY+   V++ +DL      K FL+ QTKLHE+ C+ RT AT+ATH    +K PL++ A       I  LG+K +  A  L++ L+ E +  +++KKRQ  +GL++++ L+DG E    + + DGDVIS PPITN EKTK+  +  D+F+E++S  S+  CK VM+ LI KM +          +   SD E+D                 +G   L +E +RVVD    L++VYPSK D+
Sbjct:    6 VSESWPELELAERERRRELLLTGPGLEERVRAAGGQLPPRLFTLPLLHYLEVSGCGSLRAPGPGLAQGLPQLHSLVLRRNALGPGLSPELGPLPALRVLDLSGNALEALPPGQGLGPAEPPGLPQLQSLNLSGNRLRELPADLARCAPRLQSLNLTGNCLDSFPAELFRPGALPLLSELAAADNCLRELSPDIAHLASLKTLDLSNNQLSEIPAELADCPKLKEINFRGNKLRDKRLEKMVSGCQTRSILEYLRVGGRGGGKGKGRAEGSEKEESRRKRRERKQRREGGDGEEQDVGDAGRLLLRVLHVSENPVPLT-VRVSPEVRDVRPYIVGAVVRGMDLQPGNALKRFLTSQTKLHEDLCEKRTAATLATHELRAVKGPLLYCARPPQDLKIVPLGRK-EAKAKELVRQLQLEAEEQRKQKKRQSVSGLHRYLHLLDGNENYPCLVDADGDVISFPPITNSEKTKVKKTTSDLFLEVTSATSLQICKDVMDALILKMAEMKKYTLENKEEGSLSDTEADAVSGQLPDPTTNPSAGKDGPSLLVVEQVRVVDLEGSLKVVYPSKADL 572
The following BLAST results are available for this feature:
BLAST of TCONS_00000534-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
LRC476.645e-7833.57Leucine-rich repeat-containing protein 47 OS=Homo ... [more]
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