Sequence
The following sequences are available for this feature:
polypeptide sequence
>TCONS_00000534-protein ID=TCONS_00000534-protein|Name=TCONS_00000534-protein|organism=Clytia hemisphaerica|type=polypeptide|length=528bp Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following
gene feature:
This polypeptide derives from the following
transcript feature(s):
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: Molecular Function
Term Definition
GO:0005515 protein binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category
Term Accession
Term Name
molecular_function
GO:0005515 protein binding
InterPro
Analysis Name:
InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
50 100 150 200 250 300 350 400 450 500 Score = Expect = 15.0 / Score = 12.4 Expect = 150.0 / Score = 4.7 Expect = 30.0 / Score = 10.1 Expect = 57.0 / Score = 8.0 Expect = 160.0 / Score = 4.5 Score = Expect = 60.0 / Score = 6.9 Expect = 0.095 / Score = 21.8 Expect = 110.0 / Score = 4.8 Expect = 15.0 / Score = 11.9 Expect = 6.2E-7 / Score = 29.0 Expect = 1.5E-6 / Score = 27.8 Score = 7.165 Score = 6.21 Score = 7.042 Score = 5.094 Score = 5.163 Score = 6.565 Score = 5.356 Expect = 2.1E-18 / Score = 65.5 Expect = 2.5E-22 / Score = 78.3 Score = Score = Expect = 3.1E-10 / Score = 39.3 Sequence Coil SM00364 mobidb-lite SM00369 PF13855 PS51450 PS51450 PS51450 PS51450 PS51450 PS51450 PS51450 G3DSA:3.80.10.10 G3DSA:3.80.10.10 SSF52058 G3DSA:3.50.40.10
IPR Term IPR Description Source Source Term Source Description Alignment
None No IPR available COILS Coil Coil coord: 385..405 None No IPR available SMART SM00364 LRR_bac_2 coord: 195..214 None No IPR available MOBIDB_LITE mobidb-lite disorder_prediction coord: 256..283 IPR003591 Leucine-rich repeat, typical subtype SMART SM00369 LRR_typ_2 coord: 195..218 IPR001611 Leucine-rich repeat PFAM PF13855 LRR_8 coord: 62..118 IPR001611 Leucine-rich repeat PROSITE PS51450 LRR coord: 107..128 IPR001611 Leucine-rich repeat PROSITE PS51450 LRR coord: 84..105 IPR001611 Leucine-rich repeat PROSITE PS51450 LRR coord: 129..150 IPR001611 Leucine-rich repeat PROSITE PS51450 LRR coord: 220..240 IPR001611 Leucine-rich repeat PROSITE PS51450 LRR coord: 174..195 IPR001611 Leucine-rich repeat PROSITE PS51450 LRR coord: 151..173 IPR001611 Leucine-rich repeat PROSITE PS51450 LRR coord: 197..218 IPR032675 Leucine-rich repeat domain, L domain-like GENE3D 3.80.10.10 coord: 7..138 IPR032675 Leucine-rich repeat domain, L domain-like GENE3D 3.80.10.10 coord: 139..287 IPR032675 Leucine-rich repeat domain, L domain-like SUPERFAMILY 52058 L domain-like coord: 313..322 IPR020825 Phenylalanyl-tRNA synthetase, B3/B4 GENE3D 3.50.40.10 coord: 338..467
Blast
BLAST of TCONS_00000534-protein vs. Swiss-Prot (Human)
Match:
LRC47 (Leucine-rich repeat-containing protein 47 OS=Homo sapiens GN=LRRC47 PE=1 SV=1)
HSP 1 Score: 255.373 bits (651), Expect = 6.645e-78
Identity = 191/569 (33.57%), Postives = 288/569 (50.62%), Query Frame = 0
Query: 16 IMESWEEIEQAADDGRHELHLNGDVISSKLERNEMKLPNKLFELVALNYLEISDTSLIEIPDD--MAKLTNLINLALHRNSI-EKVGDFFNHLPKLKFFDMSFNKLTSLPEQLNLGT--------VHTLNLSNNELASL-GDLS-GAVNLSILHIEHNELEELPTGLV---TLKHLLEVHASNNLINTLPDDLHTFPALKLFDVSENKLKEVPHSMSQCQRLKTLKLEGNPLKDNRLRKMTTQCNTRAILEYI--------AKQSGGDGGKKGKK------------GKKGKNQPVKEEAEENVRRIVITPNTDDEKRVICDASVKDVRPYLCCTVIKNLDLSDEIVFKNFLSLQTKLHENECDMRTRATIATHNATGLKFPLVFKASHVGQTVIHALGKKKQCNATTLIQNLKDERDALKQKKKRQPKTGLYKFIELVDGQEMIASVRNQDGDVISLPPITNGEKTKIGASVGDVFIEISSPVSIAQCKYVMEELIKKMFQ----------QNFNSDMESD-----------------EG---LWIEPIRVVDENEDLRIVYPSKIDI 518
+ ESW E+E A + R EL L G + ++ +LP +LF L L+YLE+S + P L L +L L RN++ + LP L+ D+S N L +LP LG + +LNLS N L L DL+ A L L++ N L+ P L L L E+ A++N + L D+ +LK D+S N+L E+P ++ C +LK + GN L+D RL KM + C TR+ILEY+ + +G +K + G G+ Q V + +R + ++ N V V+DVRPY+ V++ +DL K FL+ QTKLHE+ C+ RT AT+ATH +K PL++ A I LG+K + A L++ L+ E + +++KKRQ +GL++++ L+DG E + + DGDVIS PPITN EKTK+ + D+F+E++S S+ CK VM+ LI KM + + SD E+D +G L +E +RVVD L++VYPSK D+
Sbjct: 6 VSESWPELELAERERRRELLLTGPGLEERVRAAGGQLPPRLFTLPLLHYLEVSGCGSLRAPGPGLAQGLPQLHSLVLRRNALGPGLSPELGPLPALRVLDLSGNALEALPPGQGLGPAEPPGLPQLQSLNLSGNRLRELPADLARCAPRLQSLNLTGNCLDSFPAELFRPGALPLLSELAAADNCLRELSPDIAHLASLKTLDLSNNQLSEIPAELADCPKLKEINFRGNKLRDKRLEKMVSGCQTRSILEYLRVGGRGGGKGKGRAEGSEKEESRRKRRERKQRREGGDGEEQDVGDAGRLLLRVLHVSENPVPLT-VRVSPEVRDVRPYIVGAVVRGMDLQPGNALKRFLTSQTKLHEDLCEKRTAATLATHELRAVKGPLLYCARPPQDLKIVPLGRK-EAKAKELVRQLQLEAEEQRKQKKRQSVSGLHRYLHLLDGNENYPCLVDADGDVISFPPITNSEKTKVKKTTSDLFLEVTSATSLQICKDVMDALILKMAEMKKYTLENKEEGSLSDTEADAVSGQLPDPTTNPSAGKDGPSLLVVEQVRVVDLEGSLKVVYPSKADL 572
The following BLAST results are available for this feature:
BLAST of TCONS_00000534-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (
Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens) )
Total hits: 1
F S T K I T I Y R N K K I K E I M E S W E E I E Q A A D D G R H E L H L N G D V I S S K L E R N E M K L P N K L F E L V A L N Y L E I S D T S L I E I P D D M A K L T N L I N L A L H R N S I E K V G D F F N H L P K L K F F D M S F N K L T S L P E Q L N L G T V H T L N L S N N E L A S L G D L S G A V N L S I L H I E H N E L E E L P T G L V T L K H L L E V H A S N N L I N T L P D D L H T F P A L K L F D V S E N K L K E V P H S M S Q C Q R L K T L K L E G N P L K D N R L R K M T T Q C N T R A I L E Y I A K Q S G G D G G K K G K K G K K G K N Q P V K E E A E E N V R R I V I T P N T D D E K R V I C D A S V K D V R P Y L C C T V I K N L D L S D E I V F K N F L S L Q T K L H E N E C D M R T R A T I A T H N A T G L K F P L V F K A S H V G Q T V I H A L G K K K Q C N A T T L I Q N L K D E R D A L K Q K K K R Q P K T G L Y K F I E L V D G Q E M I A S V R N Q D G D V I S L P P I T N G E K T K I G A S V G D V F I E I S S P V S I A Q C K Y V M E E L I K K M F Q Q N F N S D M E S D E G L W I E P I R V V D E N E D L R I V Y P S K I D I D F S N I P V K R L 50 100 150 200 250 300 350 400 450 500 Expect = 6.64e-78 / Id = 33.57 Sequence LRC47
Match Name E-value Identity Description
LRC47 6.645e-78 33.57 Leucine-rich repeat-containing protein 47 OS=Homo ... [more]
back to top
