TCONS_00000476-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00000476-protein
Unique NameTCONS_00000476-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length205

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00000476-protein ID=TCONS_00000476-protein|Name=TCONS_00000476-protein|organism=Clytia hemisphaerica|type=polypeptide|length=205bp
MSIMSYNGSALVAMKGKDCVAIASDLRYGIQLQTVAFDFEKIFQISDKLY
LGLSGLATDIQTVSNLAKFRTNLYELRENRKVSPKAFMNIMSNILYGRRF
GPYFVEPIICGLHPKTNEPYIASCDLIGCPMEPEDFVVGGTCSEQLYGMC
EVVWEPDMGPDDLFESISQALLNAQDRDCMAGWGAVVHIIEKDKVTTRKL
KGRMD
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_000300XLOC_000300Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00000476TCONS_00000476Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR029055Ntn_hydrolases_N
IPR001353Proteasome_sua/b
IPR016050Proteasome_bsu_CS
IPR023333Proteasome_suB-type
IPR033811Proteasome_beta_3
Vocabulary: Cellular Component
TermDefinition
GO:0005839proteasome core complex
GO:0019774proteasome core complex, beta-subunit complex
Vocabulary: Biological Process
TermDefinition
GO:0051603proteolysis involved in cellular protein catabolic process
GO:0043161proteasome-mediated ubiquitin-dependent protein catabolic process
Vocabulary: Molecular Function
TermDefinition
GO:0004298threonine-type endopeptidase activity
GO:0004175endopeptidase activity
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0043161 proteasome-mediated ubiquitin-dependent protein catabolic process
biological_process GO:0051603 proteolysis involved in cellular protein catabolic process
cellular_component GO:0005839 proteasome core complex
cellular_component GO:0019774 proteasome core complex, beta-subunit complex
molecular_function GO:0004175 endopeptidase activity
molecular_function GO:0004298 threonine-type endopeptidase activity
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR029055Nucleophile aminohydrolases, N-terminalGENE3D3.60.20.10coord: 2..205
e-value: 3.1E-40
score: 137.4
IPR029055Nucleophile aminohydrolases, N-terminalSUPERFAMILY56235N-terminal nucleophile aminohydrolases (Ntn hydrolases)coord: 3..205
IPR001353Proteasome, subunit alpha/betaPFAMPF00227Proteasomecoord: 7..190
e-value: 9.2E-41
score: 139.3
IPR016050Proteasome beta-type subunit, conserved sitePROSITEPS00854PROTEASOME_BETA_1coord: 12..59
IPR023333Proteasome B-type subunitPROSITEPS51476PROTEASOME_BETA_2coord: 8..190
score: 42.969
IPR033811Proteasome beta 3 subunitCDDcd03759proteasome_beta_type_3coord: 6..201
e-value: 7.0267E-124
score: 350.389

Blast
[Close]
BLAST of TCONS_00000476-protein vs. Swiss-Prot (Human)
Match: PSB3 (Proteasome subunit beta type-3 OS=Homo sapiens GN=PSMB3 PE=1 SV=2)

HSP 1 Score: 298.901 bits (764), Expect = 2.609e-104
Identity = 133/205 (64.88%), Postives = 169/205 (82.44%), Query Frame = 0 
Query:    1 MSIMSYNGSALVAMKGKDCVAIASDLRYGIQLQTVAFDFEKIFQISDKLYLGLSGLATDIQTVSNLAKFRTNLYELRENRKVSPKAFMNIMSNILYGRRFGPYFVEPIICGLHPKTNEPYIASCDLIGCPMEPEDFVVGGTCSEQLYGMCEVVWEPDMGPDDLFESISQALLNAQDRDCMAGWGAVVHIIEKDKVTTRKLKGRMD 205
            MSIMSYNG A++AMKGK+CVAIA+D R+GIQ Q V  DF+KIF + D+LY+GL+GLATD+QTV+   KFR NLYEL+E R++ P   M++++N+LY +RFGPY+ EP+I GL PKT +P+I S DLIGCPM  +DFVV GTC+EQ+YGMCE +WEP+M PD LFE+ISQA+LNA DRD ++G G +VHIIEKDK+TTR LK RMD
Sbjct:    1 MSIMSYNGGAVMAMKGKNCVAIAADRRFGIQAQMVTTDFQKIFPMGDRLYIGLAGLATDVQTVAQRLKFRLNLYELKEGRQIKPYTLMSMVANLLYEKRFGPYYTEPVIAGLDPKTFKPFICSLDLIGCPMVTDDFVVSGTCAEQMYGMCESLWEPNMDPDHLFETISQAMLNAVDRDAVSGMGVIVHIIEKDKITTRTLKARMD 205
The following BLAST results are available for this feature:
BLAST of TCONS_00000476-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
PSB32.609e-10464.88Proteasome subunit beta type-3 OS=Homo sapiens GN=... [more]
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