|
|
Sequence
The following sequences are available for this feature:
polypeptide sequence >TCONS_00000476-protein ID=TCONS_00000476-protein|Name=TCONS_00000476-protein|organism=Clytia hemisphaerica|type=polypeptide|length=205bp
MSIMSYNGSALVAMKGKDCVAIASDLRYGIQLQTVAFDFEKIFQISDKLY
LGLSGLATDIQTVSNLAKFRTNLYELRENRKVSPKAFMNIMSNILYGRRF
GPYFVEPIICGLHPKTNEPYIASCDLIGCPMEPEDFVVGGTCSEQLYGMC
EVVWEPDMGPDDLFESISQALLNAQDRDCMAGWGAVVHIIEKDKVTTRKL
KGRMD Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
This polypeptide derives from the following transcript feature(s):
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0005839 | proteasome core complex |
| GO:0019774 | proteasome core complex, beta-subunit complex |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0051603 | proteolysis involved in cellular protein catabolic process |
| GO:0043161 | proteasome-mediated ubiquitin-dependent protein catabolic process |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0004298 | threonine-type endopeptidase activity |
| GO:0004175 | endopeptidase activity |
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0043161 |
proteasome-mediated ubiquitin-dependent protein catabolic process |
| biological_process |
GO:0051603 |
proteolysis involved in cellular protein catabolic process |
| cellular_component |
GO:0005839 |
proteasome core complex |
| cellular_component |
GO:0019774 |
proteasome core complex, beta-subunit complex |
| molecular_function |
GO:0004175 |
endopeptidase activity |
| molecular_function |
GO:0004298 |
threonine-type endopeptidase activity |
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
| IPR Term | IPR Description | Source | Source Term | Source Description | Alignment |
|---|
| IPR029055 | Nucleophile aminohydrolases, N-terminal | GENE3D | 3.60.20.10 | | coord: 2..205
e-value: 3.1E-40
score: 137.4 |
| IPR029055 | Nucleophile aminohydrolases, N-terminal | SUPERFAMILY | 56235 | N-terminal nucleophile aminohydrolases (Ntn hydrolases) | coord: 3..205 |
| IPR001353 | Proteasome, subunit alpha/beta | PFAM | PF00227 | Proteasome | coord: 7..190
e-value: 9.2E-41
score: 139.3 |
| IPR016050 | Proteasome beta-type subunit, conserved site | PROSITE | PS00854 | PROTEASOME_BETA_1 | coord: 12..59 |
| IPR023333 | Proteasome B-type subunit | PROSITE | PS51476 | PROTEASOME_BETA_2 | coord: 8..190
score: 42.969 |
| IPR033811 | Proteasome beta 3 subunit | CDD | cd03759 | proteasome_beta_type_3 | coord: 6..201
e-value: 7.0267E-124
score: 350.389 |
Blast
BLAST of TCONS_00000476-protein vs. Swiss-Prot (Human)
Match: PSB3 (Proteasome subunit beta type-3 OS=Homo sapiens GN=PSMB3 PE=1 SV=2) HSP 1 Score: 298.901 bits (764), Expect = 2.609e-104 Identity = 133/205 (64.88%), Postives = 169/205 (82.44%), Query Frame = 0 Query: 1 MSIMSYNGSALVAMKGKDCVAIASDLRYGIQLQTVAFDFEKIFQISDKLYLGLSGLATDIQTVSNLAKFRTNLYELRENRKVSPKAFMNIMSNILYGRRFGPYFVEPIICGLHPKTNEPYIASCDLIGCPMEPEDFVVGGTCSEQLYGMCEVVWEPDMGPDDLFESISQALLNAQDRDCMAGWGAVVHIIEKDKVTTRKLKGRMD 205
MSIMSYNG A++AMKGK+CVAIA+D R+GIQ Q V DF+KIF + D+LY+GL+GLATD+QTV+ KFR NLYEL+E R++ P M++++N+LY +RFGPY+ EP+I GL PKT +P+I S DLIGCPM +DFVV GTC+EQ+YGMCE +WEP+M PD LFE+ISQA+LNA DRD ++G G +VHIIEKDK+TTR LK RMD
Sbjct: 1 MSIMSYNGGAVMAMKGKNCVAIAADRRFGIQAQMVTTDFQKIFPMGDRLYIGLAGLATDVQTVAQRLKFRLNLYELKEGRQIKPYTLMSMVANLLYEKRFGPYYTEPVIAGLDPKTFKPFICSLDLIGCPMVTDDFVVSGTCAEQMYGMCESLWEPNMDPDHLFETISQAMLNAVDRDAVSGMGVIVHIIEKDKITTRTLKARMD 205
The following BLAST results are available for this feature:
BLAST of TCONS_00000476-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 ( Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
| Match Name | E-value | Identity | Description | |
|---|
| PSB3 | 2.609e-104 | 64.88 | Proteasome subunit beta type-3 OS=Homo sapiens GN=... | [more] |
back to top
|
