TCONS_00000396-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00000396-protein
Unique Name	TCONS_00000396-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	828

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00000396-protein ID=TCONS_00000396-protein|Name=TCONS_00000396-protein|organism=Clytia hemisphaerica|type=polypeptide|length=828bp
MASNEDTVKEVVLTNGKQLTAINEDYTSTIDPGTPIIVNNDQSSSSPANP
GSKPNEDILLPSSQRRNSKQSDSPVPPNSQRRNSKQSDNPVPPNSSRRNS
KQSDPEVPNSPRRNSKQSESPTLPNSQRRNSEQSEDSNSQKRNSKQSESP
VLPNSQRRNSKQSDDPVNPKSRSRNSKQSEDLNSQRRSSKQQESPKDFDL
EENALTILPRVNNVLSPSDTSFEEIVLCDPPLANRKPSKSAIKRFKANNK
QDETTKSSLKKSPLLAGLSGIKQKFSSVRFSSILDIHIPSETHPQSDEPS
YAVSIEGNEPPYDFDQQYGRLPRPTMAAPQPRTRIYKTRWYILAVFTAYV
AMQYFIWNSFGPIASSVKTAYGWENSDITLLASWDTILYVIFSLEVCWLV
QKRGLRKSFLCSLFLVVIGALFRCFAVRETKVKTYMNTGQILNGLGGMLA
QAAGPVVSSNWFPPDERTRATAISTLASQGGLALSYIIGPAIVKEEAHIR
ESFPNITTRALEAELRDEISTFMYKELLVTCFITACAMLYFPNKPKLPPS
LSASLTKLQFRDGFKRLFKMRNYWYILFIAASSTGIYSGWAAVLYLNLSD
HGLGITQSECGLMGFASTVFSAIGGIALGYLSDKWPGHMRHLLIILFSLA
FIMFCWITVICLKVFTYRLDMLYIPCLIGGFCINGSTPLMYEMIIELTYP
IPETVSIGFLGVVNNIFTFAFLLLFNVPKIGVVWTNWCLIATCFICLLLL
TRFKEKYYRMKIDGISVTSIERRVESTIERRLHGINSMAPTAKRFISDMR
GIAVVSFSSDDIITSPNLEPTPNRSYSY

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_000268	XLOC_000268	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00000396	TCONS_00000396	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR011701	MFS
IPR020846	MFS_dom

Vocabulary: **Biological Process**
Term	Definition
GO:0055085	transmembrane transport

Vocabulary: **Cellular Component**
Term	Definition
GO:0016021	integral component of membrane

GO Annotation

GO Assignments

This polypeptide is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0055085	transmembrane transport
cellular_component	GO:0016021	integral component of membrane

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR011701	Major facilitator superfamily	PFAM	PF07690	MFS_1	coord: 351..717 e-value: 1.0E-29 score: 103.5
None	No IPR available	GENE3D	1.20.1250.20		coord: 562..762 e-value: 2.3E-16 score: 59.2
None	No IPR available	GENE3D	1.20.1250.20		coord: 332..554 e-value: 6.9E-23 score: 80.5
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 16..201
IPR020846	Major facilitator superfamily domain	CDD	cd06174	MFS	coord: 342..754 e-value: 1.46639E-38 score: 146.305
IPR020846	Major facilitator superfamily domain	SUPERFAMILY	103473	MFS general substrate transporter	coord: 322..759

Blast

[Close]

BLAST of TCONS_00000396-protein vs. Swiss-Prot (Human)
Match: DIRC2 (Disrupted in renal carcinoma protein 2 OS=Homo sapiens GN=DIRC2 PE=1 SV=1)

HSP 1 Score: 212.231 bits (539), Expect = 2.486e-60
Identity = 152/445 (34.16%), Postives = 241/445 (54.16%), Query Frame = 0

Query:  329 PQPRTRIYKTRWYILAVFTAYVAMQYFIWNSFGPIASSVKTAYGWENSDITLLASWDTILYVIFSLEVCWLVQKRGLRKSFLCSLFLVVIGALFRCFAVRETKVKT-YMNTGQILNGLGGMLAQAAGPVVSSNWFPPDERTRATAISTLASQGGLALSYIIGPAIVKEEAHIRESFPNITTRALEAE-----LRDEISTFMYKELLVTCFITACAMLYFPNKPKLPPSLSASLTKLQFRDGFKRLFKMRNYWYILFIAASSTGIYSGWAAVLYLNLS-DHGLGITQSECGLMGFASTVFSAIGGIALGYLSDKWPGHMRHLLIILFSLAFIMFCWITVICLKVFTY---RLDMLYIPCLIGGFCINGSTPLMYEMIIELTYPIPETVSIGFLGVVNNIFTFAFLLLFNVPKIGVVWTNWCLIATCFICLLLLTRFKEKYYRMKID 763
            P P  R+Y  RW +L +F+    +Q  +WN++GPI +S + AYG+ + DI LL  W  I ++       WL+ KRGLR + L + FL+V+G   RC  + +  +K   ++ GQ+LNGL G     A P +S+ WF  DER  ATAI+++ S  G A ++++GP +V          PN T+  L AE     ++D I   +Y E  V C I +  + YFP +P LPPS++A+  +L +R    RL     +  I    A   G+++GW+ VL L L+  H   ++Q + G +GF S V   + GIA+   +D   G ++ +L++LFS A +   W T+ CL   T+       LY  C++ G  +N S P+ +E+ +E  YP+PE ++ G +  ++N+F    L         + W NWCL  +C + LLL+  F+E Y R+ +D
Sbjct:   42 PGP-GRVYGRRWLVLLLFSLLAFVQGLVWNTWGPIQNSARQAYGFSSWDIALLVLWGPIGFLP-CFAFMWLLDKRGLRITVLLTSFLMVLGTGLRCIPISDLILKRRLIHGGQMLNGLAGPTVMNAAPFLSTTWFSADERATATAIASMLSYLGGACAFLVGPLVVPA--------PNGTSPLLAAESSRAHIKDRIEAVLYAEFGVVCLIFSATLAYFPPRPPLPPSVAAASQRLSYRRSVCRLLSNFRFLMIALAYAIPLGVFAGWSGVLDLILTPAH---VSQVDAGWIGFWSIVGGCVVGIAMARFADFIRGMLKLILLLLFSGATLSSTWFTLTCLNSITHLPLTTVTLYASCILLGVFLNSSVPIFFELFVETVYPVPEGITCGVVTFLSNMFMGVLLFFLTFYHTELSWFNWCLPGSCLLSLLLILCFRESYDRLYLD 473

The following BLAST results are available for this feature:

BLAST of TCONS_00000396-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00000396-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
DIRC2	2.486e-60	34.16	Disrupted in renal carcinoma protein 2 OS=Homo sap...	[more]

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TCONS_00000396-protein (polypeptide) - C. hemisphaerica