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Sequence
The following sequences are available for this feature:
polypeptide sequence >TCONS_00000172-protein ID=TCONS_00000172-protein|Name=TCONS_00000172-protein|organism=Clytia hemisphaerica|type=polypeptide|length=308bp
MDYLFLIPKVSGNIVDHFKIIEDGFHINTADHQESSTCSSVIQVTNNFRF
LDKHRIKTTTTPPNKNDVKTNSDISFRYGQILICKVYLGKSCAVNNDKRL
AESLYPGHQSVYRTKKHLATSCPSKVKKSLSTSATPQEYCECTARKCVWY
LFDPDLVLPEYIVDFEYLSTVTPPMMSVFSELSKPTMSEEIRQQRFTEMC
TKKPEEDTTDNNVLNLEPIIASRPRLTFLTEEMILKQSGQTYLNKITELN
LHGCGLTKGKMLSSLSNIKKLVLSFNELTTMADLGGNSTLEYLDVSYNQI
TGMEGFKV Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
This polypeptide derives from the following transcript feature(s):
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0005515 | protein binding |
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0005515 |
protein binding |
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
| IPR Term | IPR Description | Source | Source Term | Source Description | Alignment |
|---|
| None | No IPR available | GENE3D | 3.90.228.10 | | coord: 12..171
e-value: 6.4E-10
score: 38.3 |
| IPR001611 | Leucine-rich repeat | PFAM | PF13516 | LRR_6 | coord: 287..302
e-value: 0.0048
score: 16.7 |
| IPR032675 | Leucine-rich repeat domain, L domain-like | GENE3D | 3.80.10.10 | | coord: 173..307
e-value: 2.1E-13
score: 48.9 |
| IPR032675 | Leucine-rich repeat domain, L domain-like | SUPERFAMILY | 52058 | L domain-like | coord: 240..303 |
Blast
BLAST of TCONS_00000172-protein vs. Swiss-Prot (Human)
Match: LRRC9 (Leucine-rich repeat-containing protein 9 OS=Homo sapiens GN=LRRC9 PE=2 SV=2) HSP 1 Score: 150.984 bits (380), Expect = 1.085e-40 Identity = 85/233 (36.48%), Postives = 137/233 (58.80%), Query Frame = 0 Query: 76 FRYGQILICKVYLGKSCAVNNDKRLAESLYPGHQSVYRTKKHLATSCPSKVKKSLSTSATPQEYCECTARKCVWYLFDPDLVLPEYIVDFEYLSTV-TPPMMSVFSELSKPTMSEEIRQQRFTEMCTKKPEEDTTDNNVLNLEPIIASRPRLTFLTEEMILKQSGQTYLNKITELNLHGCGLTKGKMLSSLSNIKKLVLSFNELTTMADLGGNSTLEYLDVSYNQITGMEGFK 307
FR+G +LI KV+LG+S + + +++S YP SV+ +K+L S Q C+C+ R+C W++FD DLVLPEY+V+FEY++ V P + SVF+ + + EE ++ + +K + D+ V+ +EP I +RP+L L ++ IL + + + I LNLHG L+K + LS L+ ++KL +SFNE T + D+ LEYLD S+N + +EGF+
Sbjct: 544 FRHGILLITKVFLGQSVQAHEKESISQSNYPMVNSVFIPRKYLLNS------------VMGQRNCDCSVRQCKWFVFDHDLVLPEYVVEFEYITMVKAPSLFSVFNNV----ILEESKKNPEVSVFSK---DLKFDDEVIKMEPRIKARPKLISLDDKTILSLAKTSVYSHIVSLNLHGNSLSKLRDLSKLTGLRKLNISFNEFTCLDDVYHLYNLEYLDASHNHVITLEGFR 757
The following BLAST results are available for this feature:
BLAST of TCONS_00000172-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 ( Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
| Match Name | E-value | Identity | Description | |
|---|
| LRRC9 | 1.085e-40 | 36.48 | Leucine-rich repeat-containing protein 9 OS=Homo s... | [more] |
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