TCONS_00000162-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00000162-protein
Unique NameTCONS_00000162-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1365

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00000162-protein ID=TCONS_00000162-protein|Name=TCONS_00000162-protein|organism=Clytia hemisphaerica|type=polypeptide|length=1365bp
MFNHAQTISKIAFLHAKYENIVQSFLPRHSGLVVESNHPFDPKIFINSNW
IVSIDYFLLDMKYRMITLFKFMVLLYAGSQVLAQTNIRKDGYCVMYGQMA
PGTEIVNPYNGPAKNFSEESYKILAETCPHLAHGINETVGCCGIGQLKSL
EKNLKTAATLFSRCPSCSKNFYNMWCDFTCSPNQSEFMDYTYGMATYYVS
DKYANDLYGSCKDVTFPGSNGKVMDLMCGTTAKLCTTEKFLKFVGTPGNG
APFNIMFNIGLNVSGVENHDAHMVGCNETYAISSDKNSTVCSCQDCQPSC
PVPPSPPQPKPIKYIMGIRETYFITGVVLLVWVFVFLAFSVFEIFRSRDS
SLEARADAVHSGSVSSNGSGYHNSTTALYGGYQQNPGKCVGLGIKAEEFL
QKIFQKWGTLCASHPWKVILGSLFFILVCSLGLLKFTVITNPVELWSSPT
TQARMEKSYYDEKFTPFYRTEQVIITSTVKNNTEEFYPYQVSSPTNFSGI
MTKEMLFRVLDLQLDLMNLTAEYNGETVALNDICYQPLYPDNKDCAVMSV
LQYWQLDAKKLNMCITNMDSDCSAGFGSRAADWHDQFSGCTKNPTAMELE
PHMKLPCMGKFGGPVTPKLALGGFEGDDYSTATTLIITFVVNNHRDESKN
KKAEAWEKVFIDYLKKWEQDPELSANLTIAYTSERSIQDEITRASESDVL
TIAISYCLMFLYIAVGLGQFRSLSRMLIDAKVTVGIIGVLIVLLSVAASL
GACSYFGTPATLIIIEVIPFLVLAVGVDNIFILVQALQRDIRLPAENTSE
QVGRVVGVVGPSMLLSSLSESVAFGFGALSTMPAVHTFAVFACFAVFFNF
ILQMTMLVAVVTLDKKRQDNSRYDILCCASGDKNAPNSEECCEGGVLHFI
VKKIYAPTLMLYPVRVTVILVFSIYLGISACFITNLSLGISQTIALPRDS
FLMNYFGNLSTYLKTGAPVYFVVKDGFDYSKVENQNLLCGSSGCNSNSLL
GEVFFSSLNPNYTSVALPASSWLDDYFSWLDPDVKCCRLRNGSTPLNMNF
CPATDPLEWRNCTSCLPKNESAQRPRPAEFRKFLQQYLKDNPSKDCSKGG
HAAYGGAVKLNAPVDGEYSVDASYFMTYHTVSTTSDEFTHSMKYARELAS
NMTERINHDVFAYSVFYVFYEQYLTIVSDTWKDLLICASGVFAVTFLLMG
FNFGLAFCIIVTVAMIVVDLMGLMYLWNISLNAVSLVNLMMAIGISVEFC
AHIGRAFSTSPYSSRVKRAEDALGTVGSSVLSGITITKFVGVFVLWFSKS
ELFEIYYFRMYMGIIIMGFLHGLVFLPVFLSYVGPASRATEEDVKRASMA
TNAHPAAREKKLISA
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_000094XLOC_000094Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00000162TCONS_00000162Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR004765NP_C_type
IPR032190NPC1_N
IPR003392Ptc/Disp
IPR000731SSD
Vocabulary: Molecular Function
TermDefinition
GO:0005319lipid transporter activity
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0005319 lipid transporter activity
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D1.20.1640.10coord: 644..874
e-value: 6.5E-42
score: 142.7
coord: 1137..1347
e-value: 1.5E-31
score: 108.8
NoneNo IPR availableSUPERFAMILY82866Multidrug efflux transporter AcrB transmembrane domaincoord: 663..863
NoneNo IPR availableSUPERFAMILY82866Multidrug efflux transporter AcrB transmembrane domaincoord: 1144..1334
IPR004765Niemann-Pick C type proteinTIGRFAMTIGR00917TIGR00917coord: 93..1334
e-value: 0.0
score: 1256.7
IPR032190Niemann-Pick C1, N-terminalPFAMPF16414NPC1_Ncoord: 91..316
e-value: 2.0E-59
score: 201.0
IPR003392Protein patched/dispatchedPFAMPF02460Patchedcoord: 1115..1333
e-value: 6.8E-32
score: 110.4
coord: 627..985
e-value: 5.8E-49
score: 166.8
IPR000731Sterol-sensing domainPROSITEPS50156SSDcoord: 698..863
score: 40.228

Blast
BLAST of TCONS_00000162-protein vs. Swiss-Prot (Human)
Match: NPC1 (Niemann-Pick C1 protein OS=Homo sapiens GN=NPC1 PE=1 SV=2)

HSP 1 Score: 1009.98 bits (2610), Expect = 0.000e+0
Identity = 567/1318 (43.02%), Postives = 799/1318 (60.62%), Query Frame = 0
Query:   79 SQVLAQTNIRKDGYCVMYGQ--MAPGTEIVN-PYNGPAKNFSEESYKILAETCPHLAHGINETVGCCGIGQLKSLEKNLKTAATLFSRCPSCSKNFYNMWCDFTCSPNQSEFMDYT----------------YGMATYYVSDKYANDLYGSCKDVTFPGSNGKVMDLMCGTTAKLCTTEKFLKFVGTPGNG-APFNI--MFNIGLNVSGVENHDAHMVGCNETYAISSDKNSTVCSCQDCQPSCPVPPSPPQPKPIKYIMGIRETYFITGVVLLVWVFVFL-AFSVFEIFRSR---------DSSLEARADAVHSGSVSSNGSGYHNSTTALYGGYQQNPGKCVGLGIKAEEFLQKIFQKWGTLCASHPWKVILGSLFFILVCSLGLLKFTVITNPVELWSSPTTQARMEKSYYDEKFTPFYRTEQVIITSTVKNNTEEFYPYQVSSPTNFSGIMTKEMLFRVLDLQLDLMNLTAEYNGETVALNDICYQPLYPDNKDCAVMSVLQYWQ-----LDAKKLNMCITNMDSDCSAGFGSRAADWHDQFSGCTKNPTAMELEPHMKLPCMGKFGGPVTPKLALGGFEGDDYSTATTLIITFVVNNH-RDESKNKKAEAWEKVFIDYLKKWEQDPELSANLTIAYTSERSIQDEITRASESDVLTIAISYCLMFLYIAVGLGQFRSLSRMLIDAKVTVGIIGVLIVLLSVAASLGACSYFGTPATLIIIEVIPFLVLAVGVDNIFILVQALQRDIRLPAENTSEQVGRVVGVVGPSMLLSSLSESVAFGFGALSTMPAVHTFAVFACFAVFFNFILQMTMLVAVVTLDKKRQDNSRYDILCCASGDKNAPNSEECCEGGVLHFIVKKIYAPTLMLYPVRVTVILVFSIYLGISACFITNLSLGISQTIALPRDSFLMNYFGNLSTYLKTGAPVYFVVKDGFDYSKVENQNLLCGSSGCNSNSLLGEVFFSSLNPNYTSVALPASSWLDDYFSWLDPDVKCCRLRNGSTPLNMNFCPAT--DPLEWRNCTSCLPKN-ESAQRPRPAEFRKFLQQYLKDNPSKDCSKGGHAAYGGAVKLNAPVDGEYSVDASYFMTYHTVSTTSDEFTHSMKYARELASNMTERIN-----HDVFAYSVFYVFYEQYLTIVSDTWKDLLICASGVFAVTFLLMGFNFGLAFCIIVTVAMIVVDLMGLMYLWNISLNAVSLVNLMMAIGISVEFCAHIGRAFSTSPYSSRVKRAEDALGTVGSSVLSGITITKFVGVFVLWFSKSELFEIYYFRMYMGIIIMGFLHGLVFLPVFLSYVGPA-----SRATEEDVK 1345
            +QV +Q+       CV YG+  +A G +  N  Y+GP K   ++ Y ++ E CP    G N ++ CC + QL++L+ NL+      SRCPSC  N  N++C+ TCSP QS+F++ T                     YYV   +AN +Y +C+DV  P SN K + L+CG  A  C    +++++    NG APF I  +F+    V G+E  +    GC+E    S D+ +  CSCQDC   C   P PP P     I+G+   Y I  +  + ++ VF  AF     +R R         DS++    +A   G  S                       C  +    E  L+++F +WG+ C  +P  VI  SL FI  CS GL+   V TNPV+LWS+P++QAR+EK Y+D+ F PF+RTEQ+II + + +    + PY   +   F   +  ++L +VLDLQ+ + N+TA Y+ ETV L DIC  PL P N +C ++SVL Y+Q     LD KK +                  AD+H  F  C + P ++     +  PC+G FGGPV P L LGG++  +Y+ AT L+ITF VNN+  D  K ++A+AWEK FI+++K ++     + NLTI++T+ERSI+DE+ R S+SDV T+ ISY +MFLYI++ LG  +S  R+L+D+KV++GI G+LIVL SVA SLG  SY G P TLI+IEVIPFLVLAVGVDNIFILVQA QRD RL  E   +Q+GRV+G V PSM LSS SE+VAF  GALS MPAVHTF++FA  AVF +F+LQ+T  V+++ LD KRQ+ +R DI CC  G ++   S +  E  +  F  K  Y+P L+   +R  VI +F   L  S   +  + +G+ Q++++P DS++++YF ++S YL  G PVYFV+++G DY+  + QN++CG  GCN++SL+ ++F ++   NYT +    SSW+DDYF W+ P   CCR+ N    +   FC A+  DP     C  C P   E  QRP+  +F +FL  +L DNP+  C KGGHAAY  AV  N  +     V A+YFMTYHTV  TS +F  ++K AR +ASN+TE +      + VF YSVFYVFYEQYLTI+ DT  +L +    +F VT +L+G     A  +  T+AM++V++ G+M+LW ISLNAVSLVNL+M+ GISVEFC+HI RAF+ S   SRV+RAE+AL  +GSSV SGIT+TKF G+ VL F+KS++F+I+YFRMY+ ++++G  HGL+FLPV LSY+GP+     S ATEE  K
Sbjct:   18 AQVFSQS-------CVWYGECGIAYGDKRYNCEYSGPPKPLPKDGYDLVQELCPGFFFG-NVSL-CCDVRQLQTLKDNLQLPLQFLSRCPSCFYNLLNLFCELTCSPRQSQFLNVTATEDYVDPVTNQTKTNVKELQYYVGQSFANAMYNACRDVEAPSSNDKALGLLCGKDADACNATNWIEYMFNKDNGQAPFTITPVFS-DFPVHGMEPMNNATKGCDE----SVDEVTAPCSCQDCSIVCGPKPQPPPPPAPWTILGLDAMYVIMWITYMAFLLVFFGAFFAVWCYRKRYFVSEYTPIDSNIAFSVNASDKGEASC----------------------CDPVSAAFEGCLRRLFTRWGSFCVRNPGCVIFFSLVFITACSSGLVFVRVTTNPVDLWSAPSSQARLEKEYFDQHFGPFFRTEQLIIRAPLTDK-HIYQPYPSGADVPFGPPLDIQILHQVLDLQIAIENITASYDNETVTLQDICLAPLSPYNTNCTILSVLNYFQNSHSVLDHKKGDDFFV-------------YADYHTHFLYCVRAPASLNDTSLLHDPCLGTFGGPVFPWLVLGGYDDQNYNNATALVITFPVNNYYNDTEKLQRAQAWEKEFINFVKNYK-----NPNLTISFTAERSIEDELNRESDSDVFTVVISYAIMFLYISLALGHMKSCRRLLVDSKVSLGIAGILIVLSSVACSLGVFSYIGLPLTLIVIEVIPFLVLAVGVDNIFILVQAYQRDERLQGETLDQQLGRVLGEVAPSMFLSSFSETVAFFLGALSVMPAVHTFSLFAGLAVFIDFLLQITCFVSLLGLDIKRQEKNRLDIFCCVRGAEDG-TSVQASESCLFRFF-KNSYSPLLLKDWMRPIVIAIFVGVLSFSIAVLNKVDIGLDQSLSMPDDSYMVDYFKSISQYLHAGPPVYFVLEEGHDYTSSKGQNMVCGGMGCNNDSLVQQIFNAAQLDNYTRIGFAPSSWIDDYFDWVKPQSSCCRVDN----ITDQFCNASVVDP----ACVRCRPLTPEGKQRPQGGDFMRFLPMFLSDNPNPKCGKGGHAAYSSAV--NILLGHGTRVGATYFMTYHTVLQTSADFIDALKKARLIASNVTETMGINGSAYRVFPYSVFYVFYEQYLTIIDDTIFNLGVSLGAIFLVTMVLLGCELWSAVIMCATIAMVLVNMFGVMWLWGISLNAVSLVNLVMSCGISVEFCSHITRAFTVSMKGSRVERAEEALAHMGSSVFSGITLTKFGGIVVLAFAKSQIFQIFYFRMYLAMVLLGATHGLIFLPVLLSYIGPSVNKAKSCATEERYK 1268          
The following BLAST results are available for this feature:
BLAST of TCONS_00000162-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
NPC10.000e+043.02Niemann-Pick C1 protein OS=Homo sapiens GN=NPC1 PE... [more]
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