TCONS_00000127-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00000127-protein
Unique NameTCONS_00000127-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length386

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00000127-protein ID=TCONS_00000127-protein|Name=TCONS_00000127-protein|organism=Clytia hemisphaerica|type=polypeptide|length=386bp
MVKYTSLEINSNEATTVYFDECERKDAAGKPSYGPCDILTLILIYTIWFI
TLPFTFCCSFKIIPQCQRVIVYRLGRILPLKGPGLITVVPCIDKLKRVDM
RMRAFKVPPQEIMTVDNGVLKIGADVQYRYVDPILTQTIQDLDHSLRVSG
QASLTSIISCNDIAFVKHEKQLLQQRLQSHLNKVVSAWGIEIARFEMEHS
TVLKERGGITPSSQNDDDEVDGAEMIMNLIKSVVSPEGNLFSGLSIPHVS
PTDVLPNYTSTLSSSTQKVAAPALLTAAELFSIAKGIVDEPLCQQINAVF
QFQIQYTDPSTRTWTVDVKNSPGFVIEGPVAGFPDVVFKLEEQTFQKIFY
GQLTPRQAYMNSQLTFNGSLATAMKLELLIKRLKAM
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_000069XLOC_000069Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00000127TCONS_00000127Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001972Stomatin_fam
IPR001107Band_7
IPR003033SCP2_sterol-bd_dom
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016020 membrane
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 163..183
IPR001972Stomatin familyPRINTSPR00721STOMATINcoord: 112..133
score: 31.17
coord: 65..87
score: 36.96
coord: 166..189
score: 19.94
coord: 146..163
score: 19.05
IPR001107Band 7 domainSMARTSM00244PHB_4coord: 58..233
e-value: 5.8E-25
score: 98.9
IPR001107Band 7 domainPFAMPF01145Band_7coord: 62..197
e-value: 1.5E-10
score: 41.3
IPR001107Band 7 domainSUPERFAMILY117892Band 7/SPFH domaincoord: 89..199
IPR003033SCP2 sterol-binding domainPFAMPF02036SCP2coord: 290..380
e-value: 6.1E-12
score: 45.8
IPR003033SCP2 sterol-binding domainGENE3D3.30.1050.10coord: 259..386
e-value: 1.1E-21
score: 76.8
IPR003033SCP2 sterol-binding domainSUPERFAMILY55718SCP-likecoord: 279..382

Blast
[Close]
BLAST of TCONS_00000127-protein vs. Swiss-Prot (Human)
Match: STML1 (Stomatin-like protein 1 OS=Homo sapiens GN=STOML1 PE=1 SV=1)

HSP 1 Score: 181.03 bits (458), Expect = 4.744e-53
Identity = 112/358 (31.28%), Postives = 186/358 (51.96%), Query Frame = 0 
Query:   36 CDILTLILIYTIWFITLPFTFCCSFKIIPQCQRVIVYRLGRILPLKGPGLITVVPCIDKLKRVDMRMRAFKVPPQEIMTVDNGVLKIGADVQYRYVDPILT-QTIQDLDHSLRVSGQASLTSIISCNDIAFVKHEKQLLQQRLQSHLNKVVSAWGIEIARFEMEHSTVLKERGGITPSSQNDDDEVDGAEMIMNLIKSVVSPEGNLFSGLSIPHVSPTDVL--------PNYTSTLSSSTQKVAAPALLTAAELFSIAKGIVDEPLCQQINAVFQFQIQYTDPSTRTWTVDVKNSPGFVIEGPVAGFPDVVFKLEEQTFQKIFYGQLTPRQAYMNSQLTFNGSLATAMKLELLIKRLK 384
            C  L   L + +  +T P +   + KI+P  +R+IV+RLGRI   +GPG++ ++P ID  +RVD+R RAF VPP ++ + D  VL +GADVQ+R  DP+L+  T++DL+ + R++ Q ++T  +    +  ++ EK  +  +L   +N V  AWG+E+ R E+    VL+     +P+  N D  +   ++ ++ +   +    N  +G   P   P D +        P       SS ++  A  LLTA + F      + E L  Q+ A +QF +     +   + +D+    G V  G   G PDVV ++ E   + +   +L P  AYM+ +L   G LA AMKLE +++ LK
Sbjct:   55 CHGLISFLGFLLLLVTFPISGWFALKIVPTYERMIVFRLGRIRTPQGPGMVLLLPFIDSFQRVDLRTRAFNVPPCKLASKDGAVLSVGADVQFRIWDPVLSVMTVKDLNTATRMTAQNAMTKALLKRPLREIQMEKLKISDQLLLEINDVTRAWGLEVDRVELAVEAVLQPPQD-SPAGPNLDSTLQ--QLALHFLGGSM----NSMAG-GAPSPGPADTVEMVSEVEPPAPQVGARSSPKQPLAEGLLTALQPF------LSEALVSQVGACYQFNVVLPSGTQSAYFLDLTTGRGRVGHGVPDGIPDVVVEMAEADLRALLCRELRPLGAYMSGRLKVKGDLAMAMKLEAVLRALK 398
The following BLAST results are available for this feature:
BLAST of TCONS_00000127-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
STML14.744e-5331.28Stomatin-like protein 1 OS=Homo sapiens GN=STOML1 ... [more]
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