TCONS_00000127-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00000127-protein
Unique Name	TCONS_00000127-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	386

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00000127-protein ID=TCONS_00000127-protein|Name=TCONS_00000127-protein|organism=Clytia hemisphaerica|type=polypeptide|length=386bp
MVKYTSLEINSNEATTVYFDECERKDAAGKPSYGPCDILTLILIYTIWFI
TLPFTFCCSFKIIPQCQRVIVYRLGRILPLKGPGLITVVPCIDKLKRVDM
RMRAFKVPPQEIMTVDNGVLKIGADVQYRYVDPILTQTIQDLDHSLRVSG
QASLTSIISCNDIAFVKHEKQLLQQRLQSHLNKVVSAWGIEIARFEMEHS
TVLKERGGITPSSQNDDDEVDGAEMIMNLIKSVVSPEGNLFSGLSIPHVS
PTDVLPNYTSTLSSSTQKVAAPALLTAAELFSIAKGIVDEPLCQQINAVF
QFQIQYTDPSTRTWTVDVKNSPGFVIEGPVAGFPDVVFKLEEQTFQKIFY
GQLTPRQAYMNSQLTFNGSLATAMKLELLIKRLKAM

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_000069	XLOC_000069	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00000127	TCONS_00000127	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR001972	Stomatin_fam
IPR001107	Band_7
IPR003033	SCP2_sterol-bd_dom

Vocabulary: **Cellular Component**
Term	Definition
GO:0016020	membrane

GO Annotation

GO Assignments

This polypeptide is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016020	membrane

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 163..183
IPR001972	Stomatin family	PRINTS	PR00721	STOMATIN	coord: 112..133 score: 31.17 coord: 65..87 score: 36.96 coord: 166..189 score: 19.94 coord: 146..163 score: 19.05
IPR001107	Band 7 domain	SMART	SM00244	PHB_4	coord: 58..233 e-value: 5.8E-25 score: 98.9
IPR001107	Band 7 domain	PFAM	PF01145	Band_7	coord: 62..197 e-value: 1.5E-10 score: 41.3
IPR001107	Band 7 domain	SUPERFAMILY	117892	Band 7/SPFH domain	coord: 89..199
IPR003033	SCP2 sterol-binding domain	PFAM	PF02036	SCP2	coord: 290..380 e-value: 6.1E-12 score: 45.8
IPR003033	SCP2 sterol-binding domain	GENE3D	3.30.1050.10		coord: 259..386 e-value: 1.1E-21 score: 76.8
IPR003033	SCP2 sterol-binding domain	SUPERFAMILY	55718	SCP-like	coord: 279..382

Blast

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BLAST of TCONS_00000127-protein vs. Swiss-Prot (Human)
Match: STML1 (Stomatin-like protein 1 OS=Homo sapiens GN=STOML1 PE=1 SV=1)

HSP 1 Score: 181.03 bits (458), Expect = 4.744e-53
Identity = 112/358 (31.28%), Postives = 186/358 (51.96%), Query Frame = 0

Query:   36 CDILTLILIYTIWFITLPFTFCCSFKIIPQCQRVIVYRLGRILPLKGPGLITVVPCIDKLKRVDMRMRAFKVPPQEIMTVDNGVLKIGADVQYRYVDPILT-QTIQDLDHSLRVSGQASLTSIISCNDIAFVKHEKQLLQQRLQSHLNKVVSAWGIEIARFEMEHSTVLKERGGITPSSQNDDDEVDGAEMIMNLIKSVVSPEGNLFSGLSIPHVSPTDVL--------PNYTSTLSSSTQKVAAPALLTAAELFSIAKGIVDEPLCQQINAVFQFQIQYTDPSTRTWTVDVKNSPGFVIEGPVAGFPDVVFKLEEQTFQKIFYGQLTPRQAYMNSQLTFNGSLATAMKLELLIKRLK 384
            C  L   L + +  +T P +   + KI+P  +R+IV+RLGRI   +GPG++ ++P ID  +RVD+R RAF VPP ++ + D  VL +GADVQ+R  DP+L+  T++DL+ + R++ Q ++T  +    +  ++ EK  +  +L   +N V  AWG+E+ R E+    VL+     +P+  N D  +   ++ ++ +   +    N  +G   P   P D +        P       SS ++  A  LLTA + F      + E L  Q+ A +QF +     +   + +D+    G V  G   G PDVV ++ E   + +   +L P  AYM+ +L   G LA AMKLE +++ LK
Sbjct:   55 CHGLISFLGFLLLLVTFPISGWFALKIVPTYERMIVFRLGRIRTPQGPGMVLLLPFIDSFQRVDLRTRAFNVPPCKLASKDGAVLSVGADVQFRIWDPVLSVMTVKDLNTATRMTAQNAMTKALLKRPLREIQMEKLKISDQLLLEINDVTRAWGLEVDRVELAVEAVLQPPQD-SPAGPNLDSTLQ--QLALHFLGGSM----NSMAG-GAPSPGPADTVEMVSEVEPPAPQVGARSSPKQPLAEGLLTALQPF------LSEALVSQVGACYQFNVVLPSGTQSAYFLDLTTGRGRVGHGVPDGIPDVVVEMAEADLRALLCRELRPLGAYMSGRLKVKGDLAMAMKLEAVLRALK 398

The following BLAST results are available for this feature:

BLAST of TCONS_00000127-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00000127-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1

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Match Name	E-value	Identity	Description
STML1	4.744e-53	31.28	Stomatin-like protein 1 OS=Homo sapiens GN=STOML1 ...	[more]

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TCONS_00000127-protein (polypeptide) - C. hemisphaerica

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