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Sequence
The following sequences are available for this feature:
polypeptide sequence >TCONS_00000004-protein ID=TCONS_00000004-protein|Name=TCONS_00000004-protein|organism=Clytia hemisphaerica|type=polypeptide|length=453bp
SGRLSLAISKCLQSTDTKSYGPLKDEDRIFTNLYGRHDWKLKGAMARGDW
YKTKEIIVKGHDWILDEIKTSGLRGRGGAGFPTGLKWSFMNKPDDGRPKY
LVVNADEGEPGTCKDREIMRHDPHKLVEGCLVAGRAMGARAAYIYIRGEF
YNEASNMQVAINEAYKAGFLGKDACGSGYDFDVYMHRGAGAYICGEETAL
IESLEGKQGKPRLKPPFPADVGVFGCPTTVANVETVAVAPEICRRGGSWF
VGMGRSRNSGQKLFNISGHVNNPCTVEEEMSIPLKELIERHAGGVTGGWD
NLLAIIPGGSSTPLIPIDVCSDVMMDFDDLVRAQTGLGTAAIIVMNKQSD
IVRCIARLIEFYKHESCGQCTPCREGVGWMNKIMARFVEGKAKQGEIDML
WEVSKQIEGHTICALGDGAAWPVQGLIRHFRPVLEARMNQYQDDFDTKVA
AAV Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
This polypeptide derives from the following transcript feature(s):
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0051539 | 4 iron, 4 sulfur cluster binding |
| GO:0051287 | NAD binding |
| GO:0010181 | FMN binding |
| GO:0016651 | oxidoreductase activity, acting on NAD(P)H |
| GO:0008137 | NADH dehydrogenase (ubiquinone) activity |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0055114 | oxidation-reduction process |
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0055114 |
oxidation-reduction process |
| molecular_function |
GO:0051539 |
4 iron, 4 sulfur cluster binding |
| molecular_function |
GO:0010181 |
FMN binding |
| molecular_function |
GO:0051287 |
NAD binding |
| molecular_function |
GO:0008137 |
NADH dehydrogenase (ubiquinone) activity |
| molecular_function |
GO:0016651 |
oxidoreductase activity, acting on NAD(P)H |
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
| IPR Term | IPR Description | Source | Source Term | Source Description | Alignment |
|---|
| IPR019575 | NADH-ubiquinone oxidoreductase 51kDa subunit, iron-sulphur binding domain | SMART | SM00928 | NADH_4Fe_4S_2 | coord: 352..397
e-value: 5.8E-24
score: 95.6 |
| IPR019575 | NADH-ubiquinone oxidoreductase 51kDa subunit, iron-sulphur binding domain | PFAM | PF10589 | NADH_4Fe-4S | coord: 354..436
e-value: 1.1E-29
score: 102.2 |
| IPR019554 | Soluble ligand binding domain | PFAM | PF10531 | SLBB | coord: 265..313
e-value: 1.5E-7
score: 31.1 |
| IPR011537 | NADH ubiquinone oxidoreductase, F subunit | TIGRFAM | TIGR01959 | TIGR01959 | coord: 29..437
e-value: 4.7E-187
score: 619.4 |
| IPR011538 | NADH-ubiquinone oxidoreductase 51kDa subunit, FMN-binding domain | PFAM | PF01512 | Complex1_51K | coord: 68..238
e-value: 8.0E-51
score: 171.8 |
| IPR001949 | NADH:ubiquinone oxidoreductase, 51kDa subunit, conserved site | PROSITE | PS00645 | COMPLEX1_51K_2 | coord: 365..376 |
| IPR001949 | NADH:ubiquinone oxidoreductase, 51kDa subunit, conserved site | PROSITE | PS00644 | COMPLEX1_51K_1 | coord: 188..203 |
| None | No IPR available | SUPERFAMILY | 142019 | Nqo1 FMN-binding domain-like | coord: 24..260 |
| None | No IPR available | SUPERFAMILY | 142984 | Nqo1 middle domain-like | coord: 262..347 |
| None | No IPR available | SUPERFAMILY | 140490 | Nqo1C-terminal domain-like | coord: 350..441 |
Blast
BLAST of TCONS_00000004-protein vs. Swiss-Prot (Human)
Match: NDUV1 (NADH dehydrogenase [ubiquinone] flavoprotein 1, mitochondrial OS=Homo sapiens GN=NDUFV1 PE=1 SV=4) HSP 1 Score: 778.089 bits (2008), Expect = 0.000e+0 Identity = 363/439 (82.69%), Postives = 400/439 (91.12%), Query Frame = 0 Query: 3 RLSLAISKCLQSTDTKSYGPLKDEDRIFTNLYGRHDWKLKGAMARGDWYKTKEIIVKGHDWILDEIKTSGLRGRGGAGFPTGLKWSFMNKPDDGRPKYLVVNADEGEPGTCKDREIMRHDPHKLVEGCLVAGRAMGARAAYIYIRGEFYNEASNMQVAINEAYKAGFLGKDACGSGYDFDVYMHRGAGAYICGEETALIESLEGKQGKPRLKPPFPADVGVFGCPTTVANVETVAVAPEICRRGGSWFVGMGRSRNSGQKLFNISGHVNNPCTVEEEMSIPLKELIERHAGGVTGGWDNLLAIIPGGSSTPLIPIDVCSDVMMDFDDLVRAQTGLGTAAIIVMNKQSDIVRCIARLIEFYKHESCGQCTPCREGVGWMNKIMARFVEGKAKQGEIDMLWEVSKQIEGHTICALGDGAAWPVQGLIRHFRPVLEARMNQY 441
R+S+ S + S+G LKDEDRIFTNLYGRHDW+LKG+++RGDWYKTKEI++KG DWIL EIKTSGLRGRGGAGFPTGLKWSFMNKP DGRPKYLVVNADEGEPGTCKDREI+RHDPHKL+EGCLV GRAMGARAAYIYIRGEFYNEASN+QVAI EAY+AG +GK+ACGSGYDFDV++ RGAGAYICGEETALIES+EGKQGKPRLKPPFPADVGVFGCPTTVANVETVAV+P ICRRGG+WF G GR RNSG KLFNISGHVN+PCTVEEEMS+PLKELIE+HAGGVTGGWDNLLA+IPGGSSTPLIP VC V+MDFD LV+AQTGLGTAA+IVM++ +DIV+ IARLIEFYKHESCGQCTPCREGV WMNK+MARFV G A+ EID LWE+SKQIEGHTICALGDGAAWPVQGLIRHFRP LE RM ++
Sbjct: 15 RVSVRFSGDTTAPKKTSFGSLKDEDRIFTNLYGRHDWRLKGSLSRGDWYKTKEILLKGPDWILGEIKTSGLRGRGGAGFPTGLKWSFMNKPSDGRPKYLVVNADEGEPGTCKDREILRHDPHKLLEGCLVGGRAMGARAAYIYIRGEFYNEASNLQVAIREAYEAGLIGKNACGSGYDFDVFVVRGAGAYICGEETALIESIEGKQGKPRLKPPFPADVGVFGCPTTVANVETVAVSPTICRRGGTWFAGFGRERNSGTKLFNISGHVNHPCTVEEEMSVPLKELIEKHAGGVTGGWDNLLAVIPGGSSTPLIPKSVCETVLMDFDALVQAQTGLGTAAVIVMDRSTDIVKAIARLIEFYKHESCGQCTPCREGVDWMNKVMARFVRGDARPAEIDSLWEISKQIEGHTICALGDGAAWPVQGLIRHFRPELEERMQRF 453
The following BLAST results are available for this feature:
BLAST of TCONS_00000004-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 ( Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
| Match Name | E-value | Identity | Description | |
|---|
| NDUV1 | 0.000e+0 | 82.69 | NADH dehydrogenase [ubiquinone] flavoprotein 1, mi... | [more] |
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