TCONS_00000004-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00000004-protein
Unique NameTCONS_00000004-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length453

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00000004-protein ID=TCONS_00000004-protein|Name=TCONS_00000004-protein|organism=Clytia hemisphaerica|type=polypeptide|length=453bp
SGRLSLAISKCLQSTDTKSYGPLKDEDRIFTNLYGRHDWKLKGAMARGDW
YKTKEIIVKGHDWILDEIKTSGLRGRGGAGFPTGLKWSFMNKPDDGRPKY
LVVNADEGEPGTCKDREIMRHDPHKLVEGCLVAGRAMGARAAYIYIRGEF
YNEASNMQVAINEAYKAGFLGKDACGSGYDFDVYMHRGAGAYICGEETAL
IESLEGKQGKPRLKPPFPADVGVFGCPTTVANVETVAVAPEICRRGGSWF
VGMGRSRNSGQKLFNISGHVNNPCTVEEEMSIPLKELIERHAGGVTGGWD
NLLAIIPGGSSTPLIPIDVCSDVMMDFDDLVRAQTGLGTAAIIVMNKQSD
IVRCIARLIEFYKHESCGQCTPCREGVGWMNKIMARFVEGKAKQGEIDML
WEVSKQIEGHTICALGDGAAWPVQGLIRHFRPVLEARMNQYQDDFDTKVA
AAV
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_000003XLOC_000003Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00000004TCONS_00000004Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR019575Nuop51_4Fe4S-bd
IPR019554Soluble_ligand-bd
IPR011537NADH-UbQ_OxRdtase_suF
IPR011538Nuo51_FMN-bd
IPR001949NADH-UbQ_OxRdtase_51kDa_CS
Vocabulary: Molecular Function
TermDefinition
GO:00515394 iron, 4 sulfur cluster binding
GO:0051287NAD binding
GO:0010181FMN binding
GO:0016651oxidoreductase activity, acting on NAD(P)H
GO:0008137NADH dehydrogenase (ubiquinone) activity
Vocabulary: Biological Process
TermDefinition
GO:0055114oxidation-reduction process
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0055114 oxidation-reduction process
molecular_function GO:0051539 4 iron, 4 sulfur cluster binding
molecular_function GO:0010181 FMN binding
molecular_function GO:0051287 NAD binding
molecular_function GO:0008137 NADH dehydrogenase (ubiquinone) activity
molecular_function GO:0016651 oxidoreductase activity, acting on NAD(P)H
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR019575NADH-ubiquinone oxidoreductase 51kDa subunit, iron-sulphur binding domainSMARTSM00928NADH_4Fe_4S_2coord: 352..397
e-value: 5.8E-24
score: 95.6
IPR019575NADH-ubiquinone oxidoreductase 51kDa subunit, iron-sulphur binding domainPFAMPF10589NADH_4Fe-4Scoord: 354..436
e-value: 1.1E-29
score: 102.2
IPR019554Soluble ligand binding domainPFAMPF10531SLBBcoord: 265..313
e-value: 1.5E-7
score: 31.1
IPR011537NADH ubiquinone oxidoreductase, F subunitTIGRFAMTIGR01959TIGR01959coord: 29..437
e-value: 4.7E-187
score: 619.4
IPR011538NADH-ubiquinone oxidoreductase 51kDa subunit, FMN-binding domainPFAMPF01512Complex1_51Kcoord: 68..238
e-value: 8.0E-51
score: 171.8
IPR001949NADH:ubiquinone oxidoreductase, 51kDa subunit, conserved sitePROSITEPS00645COMPLEX1_51K_2coord: 365..376
IPR001949NADH:ubiquinone oxidoreductase, 51kDa subunit, conserved sitePROSITEPS00644COMPLEX1_51K_1coord: 188..203
NoneNo IPR availableSUPERFAMILY142019Nqo1 FMN-binding domain-likecoord: 24..260
NoneNo IPR availableSUPERFAMILY142984Nqo1 middle domain-likecoord: 262..347
NoneNo IPR availableSUPERFAMILY140490Nqo1C-terminal domain-likecoord: 350..441

Blast
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BLAST of TCONS_00000004-protein vs. Swiss-Prot (Human)
Match: NDUV1 (NADH dehydrogenase [ubiquinone] flavoprotein 1, mitochondrial OS=Homo sapiens GN=NDUFV1 PE=1 SV=4)

HSP 1 Score: 778.089 bits (2008), Expect = 0.000e+0
Identity = 363/439 (82.69%), Postives = 400/439 (91.12%), Query Frame = 0 
Query:    3 RLSLAISKCLQSTDTKSYGPLKDEDRIFTNLYGRHDWKLKGAMARGDWYKTKEIIVKGHDWILDEIKTSGLRGRGGAGFPTGLKWSFMNKPDDGRPKYLVVNADEGEPGTCKDREIMRHDPHKLVEGCLVAGRAMGARAAYIYIRGEFYNEASNMQVAINEAYKAGFLGKDACGSGYDFDVYMHRGAGAYICGEETALIESLEGKQGKPRLKPPFPADVGVFGCPTTVANVETVAVAPEICRRGGSWFVGMGRSRNSGQKLFNISGHVNNPCTVEEEMSIPLKELIERHAGGVTGGWDNLLAIIPGGSSTPLIPIDVCSDVMMDFDDLVRAQTGLGTAAIIVMNKQSDIVRCIARLIEFYKHESCGQCTPCREGVGWMNKIMARFVEGKAKQGEIDMLWEVSKQIEGHTICALGDGAAWPVQGLIRHFRPVLEARMNQY 441
            R+S+  S    +    S+G LKDEDRIFTNLYGRHDW+LKG+++RGDWYKTKEI++KG DWIL EIKTSGLRGRGGAGFPTGLKWSFMNKP DGRPKYLVVNADEGEPGTCKDREI+RHDPHKL+EGCLV GRAMGARAAYIYIRGEFYNEASN+QVAI EAY+AG +GK+ACGSGYDFDV++ RGAGAYICGEETALIES+EGKQGKPRLKPPFPADVGVFGCPTTVANVETVAV+P ICRRGG+WF G GR RNSG KLFNISGHVN+PCTVEEEMS+PLKELIE+HAGGVTGGWDNLLA+IPGGSSTPLIP  VC  V+MDFD LV+AQTGLGTAA+IVM++ +DIV+ IARLIEFYKHESCGQCTPCREGV WMNK+MARFV G A+  EID LWE+SKQIEGHTICALGDGAAWPVQGLIRHFRP LE RM ++
Sbjct:   15 RVSVRFSGDTTAPKKTSFGSLKDEDRIFTNLYGRHDWRLKGSLSRGDWYKTKEILLKGPDWILGEIKTSGLRGRGGAGFPTGLKWSFMNKPSDGRPKYLVVNADEGEPGTCKDREILRHDPHKLLEGCLVGGRAMGARAAYIYIRGEFYNEASNLQVAIREAYEAGLIGKNACGSGYDFDVFVVRGAGAYICGEETALIESIEGKQGKPRLKPPFPADVGVFGCPTTVANVETVAVSPTICRRGGTWFAGFGRERNSGTKLFNISGHVNHPCTVEEEMSVPLKELIEKHAGGVTGGWDNLLAVIPGGSSTPLIPKSVCETVLMDFDALVQAQTGLGTAAVIVMDRSTDIVKAIARLIEFYKHESCGQCTPCREGVDWMNKVMARFVRGDARPAEIDSLWEISKQIEGHTICALGDGAAWPVQGLIRHFRPELEERMQRF 453
The following BLAST results are available for this feature:
BLAST of TCONS_00000004-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
NDUV10.000e+082.69NADH dehydrogenase [ubiquinone] flavoprotein 1, mi... [more]
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