TCONS_00000002-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00000002-protein
Unique NameTCONS_00000002-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1117

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00000002-protein ID=TCONS_00000002-protein|Name=TCONS_00000002-protein|organism=Clytia hemisphaerica|type=polypeptide|length=1117bp
MASAACRIEVEIPADERKWPWFLVVSGLIFSSGLILIIIGRILLYFFHGA
KRRSNSVIDMNEVDELEEEEFFLEDLEQGWYLDLKEGAGNLVSAQTLQGR
ILVVLSFVFNLAECALYITETGYPIEHCLDLSDQTLWRVEICLNAFFIFH
FLIRFIAANDKLSFWAMEPLTYVDIVTVPAVFVAVYLGRNWLGLRFLRVI
YLINLADILQFLNVLHTGSSLEMAQMIGNFLALTLASAGIVHLLENTGDP
WEPINYTNKQKLNYFECLYFLFVTMSTVGYGDIYCHTYLGRLFNIGFISV
GLGLFTSYLPAIQEFLASHTKYDRAFKPTPGKRHVIVAGYITEESVTGFF
KDFLHPDREDSQTTVVILSPKYPSLKMQADLQRHCTKASYFIGTIYKFMD
CHRTRMREADAVIILCNKKCISPDEEDAANITRVISVKNYHENIRCIVQL
MMNKNKSHLLNCPQWNRELGDDIICIDELKLGFVAQSCNAPGFSTLLANL
FAMRSDTISEEIQESEKWKVAYMIGAANEMYTAQLSNAFIGMSFPQAVEL
CFEKLNLMLIAIEMKISKKERYFAINPNDKKLRLLPGTRGFFFAQDASDV
AKASKYCAKCHKDLQDPERMVKCKCRRRMKQEQEKKNPAQKGKYETKVDV
DPVHLLEAEPDEAKKDKQSLTGDYFASGEKPKFDQSGTFYWCETRSYISA
RMSLGDAAERKFKNHVVVLVLSQRLSPPLGLRQLVLPLRASNRLPHDVKK
VVILGDGDFLAREWPTLANFPDVDIVPGSPYNRSDLRAVNVNTADMCILL
SPGHGSEEDEHQALSDKEVILVTLNLKAMTFDESELAVTEEIKKVDSSRG
TSINGESSADVRVGFSSGANSRAATRMTGRPETSMSHMTAGGNSMIQEVK
KTFKGALNGANIPMITELVCDSNAMYIDQDDMNIYDDDGIFLTQPYACGS
AFTVSVLDSLVSATYFNSDVLTLVRNLVTGSVSPELDELLAEGKQPSGSY
ETQEIAAVRNRCRVAQISLFEGPLSEYGECGLFGDLFLYALRTYNMICLG
LYRFRDSQRMKDKIPSTKRYVITFPPFNFVLDPTDLVFVLMQFEKPKRKR
KSVSRVGSVASRFSGAF
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_000002XLOC_000002Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00000002TCONS_00000002Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR028325VG_K_chnl
IPR013099K_chnl_dom
IPR003929K_chnl_BK_asu
Vocabulary: Biological Process
TermDefinition
GO:0006813potassium ion transport
Vocabulary: Molecular Function
TermDefinition
GO:0005249voltage-gated potassium channel activity
Vocabulary: Cellular Component
TermDefinition
GO:0008076voltage-gated potassium channel complex
GO:0016020membrane
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006813 potassium ion transport
cellular_component GO:0016020 membrane
cellular_component GO:0008076 voltage-gated potassium channel complex
molecular_function GO:0005249 voltage-gated potassium channel activity
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR028325Voltage-gated potassium channelPRINTSPR00169KCHANNELcoord: 138..161
score: 31.06
coord: 165..185
score: 16.79
coord: 261..283
score: 38.1
coord: 93..121
score: 16.99
NoneNo IPR availablePRINTSPR01449BKCHANNELAcoord: 407..427
score: 57.14
coord: 486..501
score: 76.82
coord: 440..453
score: 42.86
coord: 364..384
score: 33.33
NoneNo IPR availableGENE3D1.20.120.350coord: 95..214
e-value: 3.6E-4
score: 19.7
NoneNo IPR availableGENE3D3.40.50.720coord: 706..934
e-value: 8.7E-19
score: 67.2
coord: 327..463
e-value: 1.0E-10
score: 41.1
NoneNo IPR availableGENE3D1.10.287.70coord: 215..318
e-value: 6.5E-19
score: 67.4
NoneNo IPR availableSUPERFAMILY81324Voltage-gated potassium channelscoord: 132..316
IPR013099Potassium channel domainPFAMPF07885Ion_trans_2coord: 233..316
e-value: 2.2E-15
score: 56.3
IPR003929Potassium channel, BK, alpha subunitPFAMPF03493BK_channel_acoord: 464..562
e-value: 1.4E-32
score: 111.7

Blast
[Close]
BLAST of TCONS_00000002-protein vs. Swiss-Prot (Human)
Match: KCMA1 (Calcium-activated potassium channel subunit alpha-1 OS=Homo sapiens GN=KCNMA1 PE=1 SV=2)

HSP 1 Score: 887.486 bits (2292), Expect = 0.000e+0
Identity = 490/1160 (42.24%), Postives = 682/1160 (58.79%), Query Frame = 0 
Query:    8 IEVEIPAD---ERKWPWFLVVSGLIFSSGLILIIIGRILLYFFH-----GAKRRSNSVID---------MNEVDELEEEEFFLEDLEQGWYLDLKEGAGNLVSAQTLQGRILVVLSFVFNLAECALYITETGYPIEHCLDLSDQTLWRVEICLNAFFIFHFLIRFIAANDKLSFWAMEPLTYVDIVTVPAVFVAVYLGRNWLGLRFLRVIYLINLADILQFLNVLHTGSSLEMAQMIGNFLALTLASAGIVHLLENTGDPWEPINYTNKQKLNYFECLYFLFVTMSTVGYGDIYCHTYLGRLFNIGFISVGLGLFTSYLPAIQEFLASHTKYDRAFKPTPGKRHVIVAGYITEESVTGFFKDFLHPDREDSQTTVVILSPKYPSLKMQADLQRHCTKASYFIGTIYKFMDCHRTRMREADAVIILCNKKCISPDEEDAANITRVISVKNYHENIRCIVQLMMNKNKSHLLNCPQWNRELGDDIICIDELKLGFVAQSCNAPGFSTLLANLFAMRSDTISEEIQESEKWKVAYMIGAANEMYTAQLSNAFIGMSFPQAVELCFEKLNLMLIAIEMKISKKERYFAINPNDKKLRLLPGTRGFFFAQDASDVAKASKYCAKCHKDLQDPERMVKCKCRR-------RMKQ-------EQEKKNPAQKGKYETKVDV-------------DPVHLLEAEPDE-----AKKDKQSLTGDYFASGEKP------------------------KFDQSGTFYWCETRSYISARMSLGDAAERKFKNHVVVLVLSQRLSPPLGLRQLVLPLRASNRLPHDVKKVVILGDGDFLAREWPTLANFPDVDIVPGSPYNRSDLRAVNVNTADMCILLSPGHGSEEDEHQALSDKEVILVTLNLKAMTFDESELAVTEEIKKVDSSRGTSINGESSADVRVGFSSGANSRAATRMTGRPETSMSHMTAGGNSMIQEVKKTFKGALNGANIPMITELVCDSNAMYIDQDDMNIYDDDGIFLTQPYACGSAFTVSVLDSLVSATYFNSDVLTLVRNLVTGSVSPELDELLAEGKQPSGSYETQEIAAVRNRCRVAQISLFEGPLSEYGECGLFGDLFLYALRTYNMICLGLYRFRDSQRMKDKIPSTKRYVITFPPFNFVLDPTDLVFVLMQFE 1094
            + +E+P D   +R W  FL  S + F  GL +I++ R L Y +      G K +    I+         +  VDE EE        E GW   +K+ AG ++SAQTL GR+LVVL F  ++    +Y  ++  PIE C +       ++++  N FF+ +F +RFIAANDKL FW +E  + VD  TVP VFV+VYL R+WLGLRFLR + LI  ++ILQFLN+L T +S+++  ++  F++  L +AG +HL+EN+GDPWE  N+ N Q L Y+EC+Y L VTMSTVGYGD+Y  T LGRLF + FI  GL +F SY+P I E + +  KY  ++    G++H++V G+IT ESV+ F KDFLH DR+D    +V L    P+L+++A  +RH T+  ++ G++    D  R ++  ADA +IL NK C  PD EDA+NI RVIS+KNYH  IR I Q++   NK+HLLN P WN + GDD IC+ ELKLGF+AQSC A G ST+LANLF+MRS    EE    + W+  Y+ G +NEMYT  LS+AF+G+SFP   ELCF KL L++IAIE K + +E    INP +  L++  GT GFF A DA +V +A  YC  CH D+ DP+R+ KC C+R       RM++         E+      G+    VD              D      A  DE     + K KQ   G   +    P                        K+D +G F+WC  +      ++  +AA      HVVV +     S  +GLR LV+PLRASN   H++K +V +G  ++L REW TL NFP V I+PG+P +R+DLRAVN+N  DMC++LS    + +D   +L DKE IL +LN+K+M FD+S + V +   +                   GF+     R++      P+ S  H       M+++   T      G NIP+ITELV D+N  ++DQDD +  D + ++LTQP+ACG+AF VSVLDSL+SATYFN ++LTL+R LVTG  +PEL+ L+AE     G Y T +  A R+RCRVAQ++L +GP ++ G+ G +GDLF  AL+TYNM+C G+YR RD+  +      TKRYVIT PP+ F L PTDL+F LMQF+
Sbjct:   73 VTMEVPCDSRGQRMWWAFLASSMVTFFGGLFIILLWRTLKYLWTVCCHCGGKTKEAQKINNGSSQADGTLKPVDEKEEAV----AAEVGWMTSVKDWAGVMISAQTLTGRVLVVLVFALSIGALVIYFIDSSNPIESCQNFYKDFTLQIDMAFNVFFLLYFGLRFIAANDKLWFW-LEVNSVVDFFTVPPVFVSVYLNRSWLGLRFLRALRLIQFSEILQFLNILKTSNSIKLVNLLSIFISTWLTAAGFIHLVENSGDPWE--NFQNNQALTYWECVYLLMVTMSTVGYGDVYAKTTLGRLFMVFFILGGLAMFASYVPEIIELIGNRKKYGGSYSAVSGRKHIVVCGHITLESVSNFLKDFLHKDRDDVNVEIVFLHNISPNLELEALFKRHFTQVEFYQGSVLNPHDLARVKIESADACLILANKYCADPDAEDASNIMRVISIKNYHPKIRIITQMLQYHNKAHLLNIPSWNWKEGDDAICLAELKLGFIAQSCLAQGLSTMLANLFSMRSFIKIEE----DTWQKYYLEGVSNEMYTEYLSSAFVGLSFPTVCELCFVKLKLLMIAIEYKSANRESRILINPGN-HLKIQEGTLGFFIASDAKEVKRAFFYCKACHDDITDPKRIKKCGCKRPKMSIYKRMRRACCFDCGRSERDCSCMSGRVRGNVDTLERAFPLSSVSVNDCSTSFRAFEDEQPSTLSPKKKQRNGGMRNSPNTSPKLMRHDPLLIPGNDQIDNMDSNVKKYDSTGMFHWCAPKEIEKVILTRSEAAMTVLSGHVVVCIFGDVSSALIGLRNLVMPLRASNFHYHELKHIVFVGSIEYLKREWETLHNFPKVSILPGTPLSRADLRAVNINLCDMCVILSANQNNIDD--TSLQDKECILASLNIKSMQFDDS-IGVLQANSQ-------------------GFTPPGMDRSS------PDNSPVH------GMLRQPSIT-----TGVNIPIITELVNDTNVQFLDQDDDDDPDTE-LYLTQPFACGTAFAVSVLDSLMSATYFNDNILTLIRTLVTGGATPELEALIAEENALRGGYSTPQTLANRDRCRVAQLALLDGPFADLGDGGCYGDLFCKALKTYNMLCFGIYRLRDAH-LSTPSQCTKRYVITNPPYEFELVPTDLIFCLMQFD 1179
The following BLAST results are available for this feature:
BLAST of TCONS_00000002-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
KCMA10.000e+042.24Calcium-activated potassium channel subunit alpha-... [more]
back to top