XLOC_045217 (gene) - C. hemisphaerica

Overview
NameXLOC_045217
Unique NameXLOC_045217
Typegene
OrganismClytia hemisphaerica (Jellyfish)

Sequence
The following sequences are available for this feature:

gene from alignment at scaffold_86:303265..313069+

Legend: gene
Hold the cursor over a type above to highlight its positions in the sequence below.
>XLOC_045217 ID=XLOC_045217|Name=XLOC_045217|organism=Clytia hemisphaerica|type=gene|length=9805bp|location=Sequence derived from alignment at scaffold_86:303265..313069+ (Clytia hemisphaerica)
tcttcatattttcatttagaagtaaataaagtaaacaaaaaaaattaaag
aatacATCAATGACAGGAATCGGCGACATCCCTCCCTTCCATGTTTGCCA
GTCGGtaagttttcaagaaaatattttttaaatttgaaagacCCTGTAAT
TCACACAGAATTATGATTATGATTTCTTTTAaagtacagcacctgacccc
gagaatgtaggtgaaatttgaatcagacctgaaagatgtagatttgcatt
ttaaaagatattaaatattttcaacgaaattttgaactctcaaaatcctt
tcccaggggttggtttcattacttttgatagatagaccaattttttttat
ccttgaagttgactcccatttttgttatagcccccagaatgtaggtttgg
tcttatggctttaaatctagtaatagtaaaatgttgatattttttcaatt
ggattaattctaacagcaaattttagaaatgttttatgcgaaaacaatat
tctaaaNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNaggacgaaaagaagagacaagaaagtt
gtttttattttgtaggttgaaaattttgtgttgaaatatgtgaataatgt
aacaacacccctgcctcgcagccctggtggaactttttcccacatcgggt
ccaaaaatttctacttaagtcccaatttgaatataaattctattgctcca
aacttaggcaaattttctgattgggctggggccccaacgggtctgggaca
cgtcgtaaaagctcaaaatttcaacattaatcatctctcaggtagtactt
tcatgttataaaagtacaacaaacaagttttatataatttgacagactta
aAATGTCGGGTTATAAAGAcccccaaattgtaggtcaactaaccccaaaa
gttaggtcaaacattttcgtcaaaatatccaACTCAGAAcagtaaatatt
gaaatggactattttccccaattccttagttcattaggactaagaaaata
ccctatcatcataacttaattccaatagatttcgatttagagaggattta
tttaaaaNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNcaaatttttatgaagttgaactatcgttagggctacaatgcta
aaaaatgagaaacctacattctcggggtttactacattctcggggtcagg
tgctgtagtAATACTATTGATTTCTACATCGCTTCTTAATAAAAGACTTG
AAGTGTGTAGGAATCTTTCCATCTCATTCAACCCGGTCGTGAATCGCCAC
CAAGTTCTACTAAAGCATGGGTAAAGCATAGGTTTATTGAAGTGATTGCT
TCCATTAATATTCTATCAATCATTTGGTTTTTCTATTTAATATCTAAGTA
GGGCTGGCGGCTGGCGATTTTTTTCGAACCAAAAACAATTCTTGAAATTG
TTCGGAtatcccctggaaaatggcaaaatttgcaaaaaaaggaaatataG
GCAGGCAATTCTTAGTTATGAAAGCCCTCGAAAAAACATACGATTCATAA
TTGAAACTGTCTGTAGCCTGTCCCACCCCTACCACGGAGGATTTTTGCAT
TCTTTGGAAAAATCTTGCTGTGTGAGGCAATTCAAGGTTTTTTATCTGCA
AGAGCTTGGTAGCGGCTAGTTATCAGGTTACCTTCGTTGAATACCAATGT
CCCGTTACTTTACCAGCTGACTGCGGAGAATGAAGTTTTGAACAACAAAT
ACAACAAACTGAAACGAAAGTATAAAGAATTATACCAAGAAATGTTAGAA
GTGAAAGAAAAGTTGATTCGTATTGAAATACATGAAGAATACAAAGGTCT
TCAGTAAGTATCTTCGTGTTCGTCTACACAAGGTCACTTTTTGGTATATT
GCAGTTGAACACCATTTAAAGAGTGCTCGATAACTGTGTAGAGcaaattc
atattttttttcaaaatttcgctGTTAAAGAAAGTACATTACTTCAAGTT
TTATGTTTTACGGCAATCATCAGACGtacaaataaaaacttttttctatt
ttatttgtaCGTCTGATGATTGCCGTAAGGCATGGAACTTGAATTAATGT
ACTTTCTTAATagcgaaattttgaaataaaaatagatatacagttgacgc
tctctaattcgatcttcaaggggaattggattttcatcgaataagggagc
tcgTCGAATAAAAGAGCGTTGTTTATGAGGGTTtctcgaataagggagcc
tattgagtagtagaacgtcgaataagagagcatcaactgtatttGTCGGT
CTGTTTCGTAGAAATGAGATGACTGAACAGCATCAAGGCAAATACAAGAA
GAAAGTCCTTCAACAACAAAAGACTATAGCTGACAAAACCAATCGAAACA
AAGAAGAGGATAATAACGCTGCAAAGTAAGGACCACTTAATGACTTAATA
TCCCCTTCGAAAAATATACTGGTTtaatagaggtttttcatgtttgGGTA
AATTACGTAATTTCCGGTACCTTCTGTGTGTGCCCTAGACTTAATAAGAA
TGTTTTTAAGTCATTTTCTTTATAGATTGGTGAGTCTATATGACAATTTA
ATGAAAAGATATGAAATCGAAATAAAACTCAATCGAAATCAAACGAAAAA
GATCAAAAAGCTTgaggtaaactttttttttttctgtcatttttttcgAT
TGATTTTTGCGCTGCCAGCCTCTTGAGTTTTTCACGAAACATtataatcg
ttttttttttataatttcgtACACAAAACGAAATTGTTCGATGTCatgta
aaaacaattttattaatGTTTACTAACCCTATGGCTCTCCAATGCTTAAT
AGTTGGCAATCGCTTTTTTGctcttaaaaatattctttttataaTACAGA
AATGAGGCGCGTctcttatgctgacaaagcagaactAACTatagaatttc
tcaaaatttgtgtattcatgatatgcaacactggagagtcttctgagaat
tttcaaaaagttcaacccaatacgtcacttaaacaatggaaaaagtgacg
tattgggtggaacttttttaaaattctcagaagactctccagtgttgcat
atcatgaataatcaGGTATGGTCTAACTTTGTGCTTGCGCAGCGCGGGag
atagactagtaaactagtcgttgaaaacagacccatatacaaaaaattca
agctccaaataaaaagaatcgaagaggtgaggttgcgtgtcttttctgaa
tttcaacgactagaagcttcttccctcaaaaaacgttgtttaattttaca
acattttttaggtttttgagaatccatccaacttttttgactaaaatgat
atttcatagtaacattaaacatgggactcacgcgcgctgaatattttatt
agtgtttacattatttgattgacagttttattataagtaataaccgacta
gtttactagtctacgcGGGAGAGGGAAAAactgttctttcttttgtttaa
tgcTGCTATGTAAGCAAAGGTTAAGAGATACGCTAAATGATGTCCTTTTt
aaatctcatggttgattgaaattcgattgacgtttttgcctggggggggg
ggggggcagtcaggcaaattgaccgacgggtatgtgcggcggttaagggt
atgtttttcaaaacatcaggaatgcactgtaagggtggacttttgataaa
tgcactgtaagggtggacttttgataaatgcactgtaagggtggaaattt
cagcaaacctgggaaaaattgcaaatttttgctcgaaaatcttgattttt
tttgctctaaaagagtttaaaatttgaaaaaatgcattgtaagggtatga
atttcaccgatttttttctgcactgtaagggtgcgattctaaaagccaat
tttttcgccgcacataccgtcagttggtaagcCCACTGCCCCCCGgccgt
ttttgcttacgttaatttgtaatttactgcgaatttgtaatttccctcct
agattttgtaatttcccgcaaaagtgacTCTGAAAATGACTCAAAATTAc
tttttgagacctcttttttttagtttcagattgatttccagtgttaaatt
aACGTCTTttagaattgttagaatttcaatccaaaccatgagattaacca
ggaatcccatgcttcttttcgtgaaattctggataaattaccctatcggt
caaattttgaaatttcgttgaactcgagaaatttcaaaaaaattctcaaa
attggCCTCGGGAAATTTATTCCAAATTCCCTCATagccatgagattact
agtacaaaccTCTCTCTCATAGTTACCTGCCAGGATTGTTTGTCATGCCT
CTTTTCTTTTATAGGCTGAAAAGGAGAAATTGAAAGATGATATTTTCAAG
AGAGAAGAAGagaatgtttttattcataaACAACTGAAAGATCGAGACGA
ACAACTGAAAAGTGCTTCATCTCTTAACAACAACACTAAATCATCAAGAC
AAGGTATCATAACTTCGTGTATTGTCGACATACATTGTCTGAATTCTTCA
TAGTAACTAACTGGTTTGCAAGTAGTtagagtgatttttttaaacagctt
aagacttggggacacgagaagtttttttcacgttggtgcaatgcaacatg
ctccatcccaccaacacaagaaaaaagtgcatgtctcatggtttctttct
ttatttcatgggacaaaaagtgagggaaatacccaaaagactgATTTTGT
CCCTGAGACAATGgggcaaaattgattcgaatcaattttgttccattgtc
ccagggacaaaaatgagaaaagcacaaatgttattaaaagaaaaatgggg
tggagacacgcgaaagcgtttcaggttggtgggatggagcatgttgcatt
gcaccaatgcGAAAAAtgcttctcgtgtccccaagcctttactcagaaaa
tgtttttttagttttttagaaACGGTACGGTACCCAGTAATGATATTGTT
TTGTGCTCCAGGGAAAGAATTTTCAGACTGCGGGTGACTacgagactgtt
catctaatatttccagaccatctaaaaggaacgacaaataactattaaaa
agcgacaaaaagaacgacaaaccctaaccctgaccctaactatcaaagaa
cacGACATATTTCTCTATTTAAGAGTGAGatggaaacattagatgaacca
gaggaatgtaaagagatggaaaaacagcttttctgattactcaaagttca
acgatcacttctattgaaaattctattgtaaaaacgttgattaggttatt
aaatgaaagtccagaaaagacggctcgccagatctagtatatgacgagcc
gtttttccattgttttcaagaagctgcttttccatctctttacattcctc
tggatAAACAAACTCTTACTACTGGATTTCTATACACAATTCACGGATGA
ATCTGAATGAATTGCTTTTTGATTTCCTCTCATTTGTATGAAATACAGTA
GTAAAATAAAAACTCTATTTTTCTTTGAGAtgtgtagactggagtcgttt
ataatgcatgtaatactaataataccaatactaataataccaatactaat
aataataatacgggatttagtttgtataaacgactggaagaatccggtgt
tccagccttatagatacaggggctaNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNagatacaggggctagctacgcagaaacttgcgtagcgagaaaacaat
ttatcaagcaacaacaaactctcaaaacgaaatcaactcaaatgaaaaac
ttttcaatacacaaatccacacatattttttttctcaagaattattttga
gcaggaaaaaattataattgcaatgTATTGACACTTTTCTTTTTTTTGGA
Gttagtgcacaaaggtttctagacgactaaaattgttccattcattactt
tttgctttatttctactatgtataaattagtcgtctagcttgctagacta
tgaGATGTGGGGTCCTAAACTCGGCGAGTGAGCACTTTTCCTCAGTTAGG
TTCAATTATGCTCACgcctttttaaataagaatggtgttttccatttcat
cacggattttcttaactttaagaaaaaataatcctaaattttcatattct
tacggtattcctAGGTTAGAATCCAAATTCATCCTAAATTTAAACATGTA
ATACATACCTGAAGCATAAAATTGTAATTTTGTAAAGGTTTTGAATAAAT
GGAAGGCTGGCAAATTCCATGAcggatgttcttagcttattcttaatttt
ttgttcaatttattcatgaatattcttagagagcacattcttatttaaaa
aaagtgtgttGGAAACCAATTACTTTTAGGTTTGGAAAACAAAATTCACG
TGCTAACCAAAGACAGAGAACGATTAATGAAAGAAAATTCTAGATTGAAA
GGTACAAGTTACTTCTTTTTTTACCTGGATTGTAGGCCATTCAAAAGCTT
TCGTCGTGTCAgtcattttaattttctttctctgGTACTTGTCAATGGCT
CAGACTTCTGTAATAGTTTTTGTAATATGGTGCTTTCACACTATTTTCAT
CTAAAAGACGTCAGGAAAATTCCTCGAGTGAATTCTCCCTTAGAAAATAC
CCTTAGCCGTGAATTTGCTCAAACCCTGATTTGCCTGACCTTCCAGGCCT
TCTCTCGGATGCCAAATAAACGTATATcttgtttattaattttcatgctt
tttttataaataatttttttagaaGAGCTGCATGGTCTGGACGCTGTAAG
TTGTTTGAttttattcataattttttttttcgaattgcGTCGTTTCCCAA
ATCCCATAATTAATTCCGTTCCGTTTAGGCCATGTGGGAAAATAAACTAA
ATCGTTCTCTTTACTTAAACTAGCttaaaaaataaagacaaaTTTCAAAT
AAGCTAGCCAAGCTTTTATAaccaaatttggtcaatttttaaGGTGCTAA
CACCGAATTCGAATCTTACCAACTTCGAAAACcctttttgctatttttta
ggTATTTAGTCCAAAAACACTCGATTTTAAGggtcttcaaattcaaaaaa
gacaTTTACCAAgcgatagagctcttcaaactaaGCAAAAAATGGACTgc
aataatttttccaaattttttagaTCAGTAGAATTTATTGGTGTTTTTGt
agtgaaaaaatgaaggaaaattgaaagcctttttttaccaaaatccaaaa
aaattacgGGTTATCAAGTGACATGTTAGTCAAGTTATCATGTTGACATT
TGAATTACAAAATAGTACccaaaaattgaccaaaatcgaTTGCAAcggac
aatttgaaaaaaaggaaagGTTTTGAGAAGGCAGGCTTTATTTAGAAGCA
TACAATGAAACAGGGGAATActttaatataaaaaatagggaaagtttttt
tgtaaatttcagaagaaatatcttttgtccccaattaaagtctgtctcaa
tataatcagCAGCGAAGACAAAAAAGTTCTTTGATAGATGTCGAATAAGA
TAGCGTTTTTTtgcttgttggaaagatattgtgGATATTGTATTCCCGGA
GTGTGGAATAtcatcaaaaaaggaaaaattaaaacaaaagggaaatcgaa
gatgaaaagtgaagaagatcattttgagacagactttaactTAAAATCCC
ATTTTATCAGTGCAACTTAAGCCTTTAAGTGCCAAGGTCAtctttttcta
agttttttaaagaaaatcgctagttcaaactttaaaggcttatatctcct
gatctagaaggagttagaagcttgttcatagctcgttggatagcttagag
tccctccccgatttaggaagggcagGGTGGGAGGTggcctgcctgaatga
tagaaaagTGCCCAGTagtaaaaaatacaaactaATTTGCTAgaagacag
aatcaagtaaagcagggccaaatttggaggttcttggatcactcgttgac
caaaaatggtcaaaaaacggtcaaaatcttaaaaaagtggattttgtcaa
atttttgcaattttttgactttttggcttaaaatctagctagaaagactc
acttttgattttttttgcgtgaccgaccatgaagcacaatccaattccta
cgagttagaccaaaaatggacgatttctaactcaaactgggaactacagg
agggcttcgctgTCCTTCATAGCcaatgtctgatatatacgacattggca
cttaaaggatTAAAACAATGGTTGATATGGTGTATATAAGATTGCAAAAT
GGCAAAAAGTTTGATCGTTACTTTTTCCCTACTTATTTCCACAGGGTTTC
TTCGAAGAATTAGAAGATATGAAATACGCATTGCATCAGTCCAATAGACT
CAACCACCAATATGAACGAACTCTAAAGAAATTGTGTAAACAGACAGGAA
TGAATTTTAAACATTTGATGGCGGTGTCAACTTCGGCACAGACGTCTGAC
ggcaaaagaaaatcttcaacaCCAACAGCCACTTCATCAAGTGTCGGTCA
ATTATCCAACAGAAAATCGAGACAATCAAACCTACCAAAATCCTAAATTG
AATTAATAAGCATTTTTTGCAGTTTTTGTAACTGTAAGTTTTGGCTAGCA
ATACTTTAAGACTTTTCCAGATCTATTCAAAGTATATAATAGTCCTCGTG
GTGAATATGTTGTGAATTTGTTAATATTTTGTGTTTGTGttaattgtaca
aaaaaatcgaaaatcgacctttATAGAGAGACTTTACTGACCGCCAAAAG
GATTGTCCTGTGAGGATATAGCTTAATGGTTCTTGAagtatcaaatattt
ttttaaactacTTTATAAAATATGGTGTTTTATTTGTGAATATATTAATC
aacttttgtaaattttattcTTAAGAAAAGGTCAATTTTGTCAAGAAATT
AGGAATTTTCGTATTTTCAGTGTGATATGTTGTTTGATACTTGATCTGAA
AACGATCATGGTCTGCGATCcttcatgaaaataaaaaatggaagATCCTA
GAAGA
Gene-mRNA-Prot
The following transcript feature(s) are a part of this gene:
Feature NameUnique NameSpeciesType
TCONS_00072854TCONS_00072854Clytia hemisphaericatranscript
TCONS_00072855TCONS_00072855Clytia hemisphaericatranscript
The following polypeptide feature(s) derives from this gene:
Feature NameUnique NameSpeciesType
TCONS_00072855-proteinTCONS_00072855-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_86supercontigscaffold_86:303265..313069 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
5.51	5.67	6.36	5.32	3.97	3.17	5.48	4.62	2.78	2.6	2.42	2.73	2.22	2.09	3.21	3.29	3.56	3.7	2.09	1.63	2.52	2.69	5.02	5.32	6.35	8.31	1.39	1.21	3.02	3.33