XLOC_045122 (gene) - C. hemisphaerica

Overview
NameXLOC_045122
Unique NameXLOC_045122
Typegene
OrganismClytia hemisphaerica (Jellyfish)

Sequence
The following sequences are available for this feature:

gene from alignment at scaffold_82:334209..345746+

Legend: gene
Hold the cursor over a type above to highlight its positions in the sequence below.
>XLOC_045122 ID=XLOC_045122|Name=XLOC_045122|organism=Clytia hemisphaerica|type=gene|length=11538bp|location=Sequence derived from alignment at scaffold_82:334209..345746+ (Clytia hemisphaerica)
ATCCACTAATTAATGCAACTGTATCGGTGATGTAATTCAATGAAGCGAGC
GCTTGTCGGTTGAAGTGAGAGCCAATCACAGAGCCTGAAAAAGTACAAAT
AGGGGAAGCAATTCAAATTCCAGTAAACCATCTGCACAATTATACATGTT
CATAACTTgtctttttagaaaatataaaatgaaaaaaattaacaaagtaA
CGAAAACTAACCTAGTGGCGCACCAACATATTGCCAAGCATCTAAGCTAA
CTGGATTATCCGTATTTTCAATACATCCCCATAACCGATATTAAAgccat
caaaacaatggaagTTGAAGTAGCTGTTTTCTCTGTCACACGGAAAAGCA
ACGTTTAAATGCTGAAACAGCAAATATCCAGTCCCGTTCCAGAGAGACCT
GTAAAAATCCCGACAACAAAACCTGGATAGAATAAACAAAAGGAAAACAC
GTGAGTATAATTAATCATCAGCTTGCGAGACACTGACACACAGTTTTTGG
ATCGAGTGCGTTAAGTTTAGCGTGAACCACTAGGGAACAAAGCCAGCGCA
CTCTCACGTCATCCACGATGGATTGTGAAATCGATACCTAGCACAGTCAC
CAACATGTTTCTTGAGTTTCTGTATGtattttcttttatgaatacaCTAG
GGAATAGTTACAAACATTTTAGCTAATTCTCTCCAACATTACTCCCGTAT
GAATNCAACAAAACCTGGATAGAATAAACAAAAGGAAAACACGTGAGTAT
AATTAATCATTTTTTACAGTGTGTTGCAAAAGTGGAGCAAATTTCGAACt
gcattctttttttataagaaactagcTGGCTGGCCTGGCTGctctttttt
ttgtgattttcagcTTAAACTTGCTTGCGTAAAATCTTTCATGATAAAAA
CTATGTAGTCTTCAGGTTTAGCCCTCTTATGTGTAAATAACTCGAATTAC
GTTGGGAAGGACGGTTAGATTTATTCAGTCTAGGTTACatatttgttgaa
tttgtatagtactagccgtcccggcgtcgtccgagacgacttcttactcc
ttttaatacgctcgctgcgctcgcttttctatttttcagaaacttgtagg
gatttgtatacaaatgtacttattttgcgagaagaaatgttcttaaattt
aggcCTTTTTCGTAAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAtcaaaaaggcgcgaa
aaaaattgccgtgtatttaaaaatcgctagcgaaaaagcctcatgcgaga
atgggagagttccgatttaagcgtattataatatagattaCTCCTACCAG
TTTTTTTCacaagaacatctaaaattttggatgttcttaaacttttgagt
tttaagcctgaaaatgttctctaaatatttttaaccccattttgtgagtg
tttCTGTTCAATTTCCTAAGATTCTGGGTATTTCATacagtccataaagc
cttaaattATTATAACTATAATTATAACTCTTGTTGTTGATATTTTGACC
ACGGAACAGCACGGAAACCTTATGTTCTAATATATAGTTTGTTGTTATAA
CAACACGTGTACTCACCTAACATGGATTCCACCAATTAAATTGGGGTATT
TTCTTGAAAGTTGTTCGCTTGTGAACtctgttcaataaaaacaaagcgAA
TGCGAAAGCAAAGAACAATGAAACAAAACCCATCTTTTTAACAGGAGGTG
TGATTCTGGTATCCAATTCTTCCAGCGCTAAAACTGCAAAATATGATGAC
GCGCCATTCTATTCGTATCTATAAAATAAAGTGTTTCAAATTTGCACGTG
TTCTGTTTAGTTCTCTCAATGAATTTGACATTGGCGATGTGTGGTAGCAT
TGTAGTGAATCAGCGGCCGATTTCAGGGGCAACTTTGAACAAAGGGCGTC
AAAATGTTCCTATTATCGTTAATTTTGGCAGGCCCTTTCCATTTAAGTCC
TGGTCaagccaccacgctactggccAATCACGTTTTCGCAAACTCAATAT
TACACAATCACAAGTGGTTAATCTTCTTTAACTTTAATCTGAGCAAACAC
TCAACGATCGTAATAAATTAGCTTATAATTGGATCAAAGTGATTACTAGT
TGTGCAAGATAACTAAATTTCCGGAGAAACAATATCTGTGTCAATTAAAG
GCTCGAAATAACTTAAACATAACTCGTTTTTTACTTACGTTTTTCATTAC
TTAttagtcaaccagcaataatttttgtgtgatatcttttgattggatga
atatttttgaaatttttttttacagaaagtaTGTCAACTTTCGAAACCGG
TGtaatgtacactttttttttaagaaacacacttttaagaaacacgaggc
tcagaatgtctaaaaactaagaaacatcttagaaacatgctgaggttgag
aatgagaaaataacattttttaattcggtttttttaagaaccttccgatc
caaaagtttagaaacatgtaagaaacatttaaggctcaaatcTCTTAAGA
ttccgatttcttaagaaacattgaggctgctttgtaaaactagtttctta
aaaaaaaattgtatgatAATTATTGAAATCATGTTTTCTTTAAGCAAAAT
CAGCAAATTGTTTGAGattttgtgcttataaaaaatgtattttttcgCAA
AGTCATGTTTTATTGCAATCATTACGAAAACGATGAGAaggcaaaaaatt
aaaacaaaaggtTAATGGGATCGAAATTGTGTATAGTAATTCTTGAAGAA
ACCTTTAAAAAACATTCGCTTTTGAAAAGGAAAACTCAGTAATCTACGAG
AACGGATATCTGCTAGGTGACttgaaataatttcaatttcgaacaattag
attttttatttGCATTATGGCGAGCTCAGGTGTTAGCTCTGAAAAAGGAA
ACGGAGGAAGGTTTGGAAATGTCTTTAAGTTTCGAAGAACACCGATGGAA
TTTCTgaagaagtatttatttgaaGGTATGTGAAATTCATTATTAGGGAA
ATTACCTCGTTGACGGTTTAGAAAGATAAGCTTTTATTTATTATCtttaa
ataaaccagccgaggctggaaggtcagccaatagagcttagctaaacaga
tgtaagagatgtactgaaacagagtagactgtCAGTTGTCTGCAGggcca
atgaggtacgtaaaaactgactactattcagtcaaagccaaaatttgaca
aggtcagaaaaacataatttgcgTCCAGAACTGTTGAACAAATTgttaac
acaggttaatttataggacctccaggtaggtccaaaaatgtgaCTGATCA
TTGTCCTACTTTGCACTTGaagcaaaatcacaaaatcttgaaaaacatct
tgaaaaacacaatttgcatccagtctgcgtaaataaattttgtagtttag
taagGTTAAGCTACACAACATGCACagaaccatcttgaagactttgctgg
tcgcaaatgataatcgaaagcaaaacttaaaattcatagctatgcgggga
agctcatttttcccccgttttatttcaaactcacttttgattggtctatg
aatttgggcgatcgctttacctccttggcggaataaacacacgaccataa
taaataaattcaacagggcagcggagtagcaattaatttcaactgggagt
actctcttctgtgccaagcactggcagtgttttttttactttaaaacaat
gttaaatgaagaccagatggatctgtttgttatggctgtgtaAGTTGTGA
TGAGAGTGTGCacgttgtgtaacttgacggtatcattcattaaattctag
aaatcatttttcataactttctgcagtctgCTTTCTACAAGTCTGATAat
agatatgtataaactgttatcgccactccttccattccatcattcagtca
aaacgtgcgccaaggttagaaaaaaggttacaaaaacacaatctgcgtcc
ggaactgcgtgaaaaatagtttgatcaatttcaacaagaactgtatatat
taatattaatataattgatcaaattccaaagaccatttttcataattttg
caagtccaataataggagatgtgatgtcatcatttggttcccgtcgaATC
TGACcaaccctgatttacggtcagcaggtagagttggagagtcagaaagc
ttttccgctgctttgctggatttccactgtcaacctctgcacgctctgtg
tttacaagttttcaaatcgaagtagagagccgcatgctaatggagagtaa
accgaaaaccagtttatccacggtatctcaattttaaaattcggatcagt
ccacacggattccctttcaacaagatgtagctgcttcttaacagaaaaat
attttcgaccaaACGAATCTCACTTTTTAAaatagaaatgacgggaacca
aacaaatttttgcgattcgccttatcaaacacgtccaagtccaaaaaagc
acgattgcatccagtctttatcaaaattagacagtagctgtacttttgta
aactttatcaaattccagtaacattataacaccatcaatcccccctaaag
gcaaacaagaaaaataggtttttattgcaaaaactattaaaaagcagcag
taaaaagtatcagaaaattcaacataaacaaaaacttgagcaaacggaaa
tactttggtacaacactgacttatcacatctcgcttgagccgccatcttg
aaacaccacattattatctgtaaaaacaacgcacgctaaaagtacccaaa
aagttaacccgatcagaagaaagtttagaaatcaaagtgagatcggaaaa
tcggatttattttttgccgtcttatgatgatggtggaaaattttacctat
ttgaatgctcagcttaggctgaccaaaaagTAGTCAATGGAATTAAACAA
ATGACCTACTTAGTTTATTATCTAACtataatttttggacctacctccgg
gtaccccggtggaggttctataaattaactcatgtccgttcgttcgttcg
tccgtccgtccgtccgtctgttaccagcttttctcaggattggctcatta
gttttttctgattttttgcacaatgatgcaAAATGGCAATGCCCAGAACG
TGACGGAGCCCGATTTTTGAGAAAAtttttttttgggcaaatttgggcca
aaaactacctaaaaatagggttttttggactttgtgcaaaatcctgtcat
tacttttttctgattttttgtacaaagatggagggcaagattctctaaag
aatggctgaagtggtttttcccggaaaattcttattcgcctttaaaaacg
gattttccgtattttggggaaatcccctttaatcaaataagaaaatatag
cttttctcaatgttgactcattatttttttctgattttttgcacaatgat
gaaaaatggcaatgcctaaaatgtgtcggagcccgattttcgaaaaaaaa
atttttgggcaaatttgggccaaaaactacctaaaaatagggttttttgg
actttgtgcaaaatcctgtcattacttttttctgattttttgtacaaaga
tggagggcaagattctttaaagaatggctgaagtggtttttcccggaaaa
ttcttattcgccttaaaaaacggattatccgtattttggggaaattccct
ttaaccaaataagaaaatatagcttttctcaatgttgactcattattttt
ttctgatttgttGCACAATGACgaaaaatggcaatgcccaaaatgtgacg
gagccagatttttaaggaaaatttttttgggcaaatttggaccaaaaaca
gcttgaaaggttttttgggcctgaatggttaaagtgattttcgtatttgg
ggaaattcctttttaccattttacattattcaacacacaagctttatttt
tccattctgaatttttgtacaattattgtcacttttttcttattttcatc
tgatgttaatcattaagtaggtccattcagcatgttgcttgtttctttTT
GGGTTATAGCACTCATTTCTATACTCGCCTACTTTTAAACTGGAGctgtt
tataatgcgtgtaatacagtaatataggcgtcatatgataatacgattat
tgttacgagATTTaattgtataaactaaaattgttccctctaTTACTTTT
TGCTATATTTCTAACTATgtttgaattagtcgtctagctcgCTAGACAAC
TAGCCTACTATGTATTTAAAGACTATTGCGGATTTTGATTCATGTTTTAA
TACTCTGCAGGCCAAGCATTACAAGACAGCTACCAACAAGAATTAGAGAA
CATCAAACTAGATGCTTTACCATGGCACAAACGTGTTTGGATCAAATACA
GGCGTATTTTTGGAATGCTCATACCagctttatttttccacttGTTTTGG
TGGGCATATTTTATCAAGttcaatcattttgatttgtttaacTCGAACTA
TCGAATTTCAATAATGGCAGTGTTTGGTTCACTAATTGCAGGTACAcgtt
ttgtttataagaacagactatataagaataacacaaggcttcgatggtca
aaatggtaagaacatattaagaacatattaaggctATACAGACTCTAAAA
TCGCCAATttcccaatttcttaagaaaacggacaaaaatgctcacaaaat
ggtgaaattaaaaacatgttaagagcattttaggCTGAAAGCTTTCctaa
ggcttaaaaaattttggatttttttataaaaaagatgtgTATACAATTAA
CTATTTTCGCTGTGTCACAGTGTATATGATGTCTTTTTTCGTGCATTCAT
CTCTCTTCCTGCTATCATTTATTGCTTAGTCCAGCAATATCACACTATCA
CCCAcgtttttattttctaagaacTAGAAACACTCGTTGCGCAAATTTTG
ATCAATAAATTTTACCATAAGGCCTATTTAGTGGAAAAAACATACGTGTC
CTAATTAGGGGGTAACCTATGTATTGAGatgtatttttttcaagatgcca
tatatttttgtaaaagctaaaacacgccgaatcgacagatcgctaaaatt
tatccgcgcgaaatttctggttatattgccgtcaataatgtaatacgagt
attcgctaaaatttatccacgcgaaatttattgaaatcgtgattcgctaa
aataaatccaaaaagaatcattcttgactcgctaatatacgctaaaatta
gtcttgctaaaatttctacgattaaagtagtcgACTCTGGGTTTATCACA
ATCTGAGATTTGATATAACTGCAGATGtaaaaattcatgaaaagtCTAGG
CTTTCATTACTCTGCCAATTTTACAGGTTTAACAAGTGAAGGTGGCGGCT
CCGTTGCTTTTCCAGTGATGACTTTAGCCTTCAAAATCAAGCCACATATC
GCAAGAGATTTTACATTACTTATTCAATCATGTGGTATGACTGCTGCCAT
GTTCACCGTTTTCTGGATGAAGGTAGATTGGTCGTTTGAAAAGAAGTTAT
AAAGAAgtaacaaaaaaagtttaaacaaaGACGAATCGGTCTCAAATGCA
TTCTTCTTTCGAGCTAGCCAAAAGCTCCATTCTAGATTCGTCTTGTTGTC
ACGGACCCAAGGGAATggcttcttataaaaatgcgTAAGATTGGCACAtg
gttttgtcatttttgtgcAACCTCTAATACCCGATTCCCAGCTGAAGTAG
TCAAACTATATTTATTTCCCTAATCCCCGAGACACTTCAACATGTATACT
AtaatagttttttttatttctagattCGAATAGAATGGCGCGCCATCGTA
TTTTGCAGTTTTGGTGGTTTATTTGGCATCATTTTAGCACTGGAAGATTT
GGATACTAGAATCACACCCCCTGTTAAAAAGATGGGTTTCGTTTCATTGT
TCTTCGCTTTCGCATTcgctttgtttttattgaacagaGTTCACAAGCGA
ACAACTTTCAAGAAAATACCCCAATTTAATTGGTGGAAAGCTTTGATACT
GATTGTTGTCGGTAAGTCGGTTCTATACGTACAATACGATTATTTTACTg
tataagtaagtctgcgaccgcagtcggaggcgacccgaagtctcctcttt
cgatagctatctacccgaaggtaggggagggcgccactctttctccctgg
atttctccacttacccttgatccttctcttagttgctgagcatcaagcag
aaaggcatcaagtaccaatttgggaatctttggtatgacccggctggggg
ttgaacccacaaccttgcgaaccgtagccagttgctctaccactgtacta
cggtcgctttTATTTTActatatatttcaaaaaatagagAGCTTCTTGAT
CGAGTTTGGAAAACAAATCtcttaaaaaggaaaaataaattagCTGGAAA
ATGCATTTAAGGCCGCTAAGGGATATTTGCTTAGATGGAAAGTTGAGACC
TAGACTTCCTAAGACTGCGTGCATTCCTATCACCTGTTAGTTTTTTGTTA
TTATAACAAATCGTATTTGAGGATCCTGGCAGCCTAGACATTTCTAGATT
CCTGATTTGCTCATTTCCCTTTGTTTTTAGGGTTTGTTGGTGGTATCTTT
ACTGGTCTTTCTGGAACAGGGATTGATATATGCTGTTTCAGCATTCTAAC
GTTACTTTTCCGTGTGACAGAGAAAACAGCAACTCCAActtccattgttt
tgatggcTTTAAATTCTGTTATGGGAATGTATTGGAGGGCTATCATGAGT
GACACACCAGTTAGCTTAGATGCGTGGCAATATGTTGGTGTAGCCATACC
GATCGTTGTTGTAGGAGCTCCCTTAGGTATGTCTATTTTTTGACAATTGG
TCATAAAGTTAAACTTTTTACCAATGGCTctgtaaaagaaaactttactT
ACAAGCTAGATATAAACTAGGGACATCTGAAAGAAGAGTACTCCACTAAC
CAACCATTATTGGCCACGGTTTATGATTGAAAAAACTTATAAATATCCTT
GTTCACTGTTTGAATTTTCAGGCTCTTTGATTGGCTCTCATTTCCACCGA
CAAGCGCTCGCTTCGTTAAATTACATCACCGATACAGTTGCATTAATCAG
TGGATTCGCTATCGTTAAACCAGACAAGAAAACTGTGGGAATCTCCCTTG
GTATCATCTTTGGTGGATTCCTTTTCTATATCATCATTACGCTGATTGGT
GGAAAATTGATGTCTTATGTTTTGTCAAGACAGCAAAGGGAATCGCCAGA
TGATGACAGgattgaaaaggaaaaagaaacaaCCGAGGACAATGTATAAA
AAATGAACGCTTCATAGTCTTCATATCAAAATATAAACAATTTTGTtcac
aaaatcgaaaaatttgttgaccaataaaacaaaataaaagggaacaatgt
ttgaaaaaatgaacgcttaatatcaaaatatggaaaattttgGTATAATA
TGTTCACAAAATCAAtgcaaatttacaaatttaaaatataaattcttATT
ACAATTATAACAGCCTTTTAGCTTTACATTATTCTGAG
Gene-mRNA-Prot
The following transcript feature(s) are a part of this gene:
Feature NameUnique NameSpeciesType
TCONS_00072693TCONS_00072693Clytia hemisphaericatranscript
TCONS_00072694TCONS_00072694Clytia hemisphaericatranscript
TCONS_00072695TCONS_00072695Clytia hemisphaericatranscript
The following polypeptide feature(s) derives from this gene:
Feature NameUnique NameSpeciesType
TCONS_00072695-proteinTCONS_00072695-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_82supercontigscaffold_82:334209..345746 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
3.55	4.4	3.35	3.3	6.16	4.31	8.49	8.34	11.9	11.9	16.91	11.24	19.85	20.64	9.47	12	8.88	10.39	10.52	10.66	9.9	8.89	10.18	7.27	9.66	9.21	9.72	8.08	8	8.49