XLOC_044458 (gene) - C. hemisphaerica

Overview
NameXLOC_044458
Unique NameXLOC_044458
Typegene
OrganismClytia hemisphaerica (Jellyfish)

Sequence
The following sequences are available for this feature:

gene from alignment at scaffold_61:5357..16279+

Legend: gene
Hold the cursor over a type above to highlight its positions in the sequence below.
>XLOC_044458 ID=XLOC_044458|Name=XLOC_044458|organism=Clytia hemisphaerica|type=gene|length=10923bp|location=Sequence derived from alignment at scaffold_61:5357..16279+ (Clytia hemisphaerica)
taaagaagaagatgaaggaAACACTTGGTATGTATGGACCAGACATAATT
AAATTATTCTAACTAATCCAACagtatttttaatcaaactttgttgtCCA
ATTAATGTTCTGTTGTCAAACTTTAATCATGGAATACTCCAGACCAGCCA
ACTTGAGATGTTCATTTTGCgtgagataaaaaaaaatttgaagcaaAATC
CGAAATCTTAGCCCGATTTTTCGATTTCGGAaaccagaaattttttttca
agatcaGAAATCtgggaaaactttttcaaaaaatcgaaaattgggGAATG
gtattttctgaaaatcagaaaatctgggaaacctttttcaaaatatcaga
aaaacaAGGTTGCCAAATGCTATAAATgtgtgagaaatcaaacttgtcaa
tcaaaaattgtgtgagacAGTGTTTGGAATGTGCAAGTCTCACGTCCAAT
GTGTGAGAGTTTGCACCTATGCTGATACTCACAAATTCTTCACAATTTAA
AGTTTGATTTAGTTTGATTACATCAATCAAACttgtttcaactttttcaa
atttaaaatcaaacacTCATAGAAGTAAAAGGGCCGATTCACTCTTTTTC
GTTAAAATTcaactccagtcaaaatttagattttatgtgagtgttttttg
aatatttctttgGAGCAGTTTGTCAAATCTCTAGGGTGTTGCAGACCAGC
CAACTTGAAATATTGCACGAGATAACAATTTTGAAGCGAAATCTAAAATG
TTGCCCGGTTTTTACGATACTGAAAATccgaaaaaattttccaaaaaaac
agtttaagttggggaaacttttttctgaaaatcaggaagatcaaaaaatt
ggaaaatcaggGAACATTttcggaaaatcagaaaaaagttttcctgaAAT
TCTGAAAACTGGGGAAacgttttccaaaaaattgaaaaaacggaaatttt
tctaaaattagcaaaaatgtgtgagaaatcaaactttgcaGAAATTGCAT
AAGACAGTTTGGAAATGTGCGAGTCGCATGTCCGATGCATGAAAGTTGGC
ACCTGTGATGTTGAACGAGCAAGGGCCCTCTTGGGAAAGACTTTCCctcc
agatatttttgtgtttgagaTTGACAACTTTTGGATTGCAAATTCTACTA
ATGTCTGACTTTTATGGCAGGTAATGCctccttttcttttgtcataaTTA
AAATTCAGGATGTTGCCGTTCCTTGGTGGAGTTCCTATaatttaacctgt
gtttgttcgttagcaatttttcttgagattggcttgtcacttttttgagc
aaatttggtcCAAAAAAAAGGCTATAACgggatttttggactttgtgaaa
aattggatcaattaaaaaaattggattAATAAGCATACACCGATGTTctt
attagccaaattacttaagttttagatgaaattttgacaaaagttGCACA
ACTCGGGTTACCTAAGGCACTCCCCAATGGCTGTATGAGGCTCCACGCAT
CAACGTAAATGTTTTTAGGTTCTTTCGAAGCATTTCGATATAATAGAAAA
TGAGATTGGGCATGGTCATATGGTCCCACGTGAGGTCAAATTATGCGTAA
ACTTTAGGGGCTTATATTTTAGGGAGACCTCTTTTATACCAAaagatacc
tatattttcttgctcagaattttctaGTGATTCTAATGATATAAGAGCAT
CATGACCGCATAATTGGATTAAAAGCTTAAGTGcacgaaaataaaataaa
atctgtctttgatgaatttctatcaaattttttagaaataatttggtTTC
ATTGTGAtaagaatttttcagactacaagttagtgtaaaatttgttactg
gatactaaaagtttaaaaaagtaatGTGCTTTCATTATTTAGACTGTCGT
TGTGAGATAATTTGACAAggcaagttttttttaaagttactaCGAAGGTA
GAGCCAATGACTTCCTCCAAACTTTtagtttgaattaaaaatttattaca
atGTGAAATACTCAATCAAATCGACCAAAACACATATTCCAAATTCTATT
TTTTAGCCTGAAAACTCAGCCCCAATCCTCGAGAAGGCGGAATCAGAAGA
GCAGGTCAGTGATTTTACTAACagtattttttacaaaaatttaatcCCAA
ATATATTGTTGTACACATCATCAAGGTACTTATTCAATGacacttttgaa
agaaacttcaATAAGTAGATGACTACAAGGGCAATTCATTTCTATGCTGG
AAGGACACATATCTTCTTAAGGAATGAAATTCGACACAAGAACAACACTA
TTATTGAATGTATTGTTCAAATGCATCATTGCACTgttttacaagcaaaa
gatatgaaaaactaataaatccaatttttaacaaagtccaaaaaacgcTA
TTTTTGGGCCCAAAAAATATTCTTTCGAAAAATGAGCTAAATCATATTTA
GAACAGcacaaaaaattaggaaaaactaatgaacagatttttaacaaaga
aaccttatttttgggcatttttcgGCCCTAACAATaagctcaaatttttt
tttcgaaaatggggctccgtcacattttggtaatcaccattttgcacctt
tgtaccaaaaatcacaaaattcctatgattaaattccgagaaaagttggt
aatagACAAACGGAcggacaaacacaggttaatttataggacctccaggt
aggtccaaaaatgaaataaaatatataagTGTTACCCAGAAAGAGCATCT
TCATCTCAGAGTATCAGAAATGGTGTACTTCTACATTTTAGGCATCCTTA
CATCCTTGACCTTGCTTgatatttttatctattttgtagCGATAGCTTTG
TAGCTTGCAATGGAATTCAATAATATTAccaggaaaaaataaaaacattc
gattttccttgttttttcaaaacacagagaaaataacatttaattttttc
cttcTTAAAAACAACAGttgagaaagaaaaacatttcatccttttttcat
tcaaaatcctCAGAGGAATGATAGAGAACTGTCTTTGAAATCGAGTGTGT
TGTCTGGATTTGCATTACTAGCCATCCCTTCTTGTTTGTTTGGAACAACG
TCAAAACACAAAAGTTGAAGTCCTGGGCGGGAAAATAGAACGTTTCAAGG
GTTTCCTCGGAGGTTCACGCATGCACAGAagtatcaaatcaaagattCAA
TTCGCTGATGCCATTCTCGTTGTGATTTCGGAAACTCTATTAAGGTCAGA
CTGATGGTGATGTGATTCTATCTGAAAAAGTGGATCTTTTGGCCATCACa
gattttagcttgaaaataaaataaaaagaagttcTTTGTTTGTATTCAAC
AGattcaacaacaacagcaacaactgcaacagcaacaacaacaacaaatg
cAACAGTCAAACAACTCTTTGCAACAACAACATTATATATTCTTCAAGTC
ATTTCTATTCATTATCAAATAAGTGTAAGTAACAAGTCCGACAAAGGAAT
GAGGAGAGGAGATTTGCGGACCAGCTGCAAGAAGAAACTATAAAAGACCA
TGAAGAGAAAAGTAAGATAACCGTAAATATTTAACCTTTGCAAATACCCT
CTAATTCGGATTATTTTAGCTTAGCTACTCCTTGAACCCATCTGAATATT
GGCTAGGTGATAATGCTAAAATTTTGTCAAGGCTTATGCATTTATCACAG
ATTTTACCTTAGTGTATTTTTCATAAGATATTCGAGTTGTGAGTTAACTT
GACTATCACTCGTTCAATAAACAAACTTTGGAATGAAGCCATTGGAACAT
TCCTAGCATCTGATACTATCATAATTAGATATGCACTAAGGAGATTGTTT
TCTTTTGCTGGTTTTATTTCCCATTGGGTCGGAAGCTAACTTTCTGGATT
TTGGGACTTGCATTGGATTGTATTATCTTATTTTattagaatcttttttt
tttctctatagGTTAATAAGCTATTCCAATTGGAAATATAAAGAAGTCGT
TTTTTCGTGCCAGTTCTTGTTTCGTCATATAAGTATGAACCATCACTTCA
CCAGGAGATTTCGAGAAGAAAAAGGTAAAACATAATTTGACATGACTTTA
AGCAAAAATAGCTACTTTGTGCAACCAGCAGTAGATCATTCAGTAtcagt
attttttttaattgagaaacttttttttactcttttgagaaattttttga
tttttgtgaagacAAACTTCCgaaatggtcaagaagtgtgttattaaaat
caaaggacaaaagccTCTGACTTAATCAATGATAGTTTGTTTGAATTATC
TGTCCATTTCAGTCAGAAAAACTTACATAGTACCCTCTCTTttggtctaa
tctgtaaaatataagattttagggggtggtgtctctattttttacagcaa
aaatgaagtagtacctggtactaaatatgggtgggtggtactaaaaagaa
attgagtgagaaatcaagttagtaccccatgggttagtaccctgcctctg
tATATATATACCCCCTGTCAGTatatcaataacaaaaaaagacgaattta
ttgttttcaattttttttctcacagCTACTTATTGCAATATCATTtacaa
atttaataaaatcttcAAACATTTTATTACCAAGTTTTGTAGCATCCCTT
TAATCTGTTTCAGCTTTATATGTGTTGTAGTCAAGGAGATGCACAATCTA
TCCAGTGTTAATGCGGTAAGTTCTTTAACGCCTTTTTGGTTTGGTATTTC
TTGCTTAATTTTAAAATCCATTTTACgcacattcaaaaacattttaaaat
tttacaacttgtCTTAATCGTGATTACAAAGGGTATAAGATTAGGCATAC
GTTAATTTAATAAGTAGTTATTGATTACACAAAACATTCACTGGTAACAT
TGTAGGAGAATTTATCTCTTCCTTTTAATATCTACGCCAACAAGGATACT
ACCAATCCCTTATTGAACGGTAGTTCATATTGTTCGATGTTTCTAAGCAC
TGTAGTAAAGCTGGAGATAAAGACCCCTGTTGATCGCTTTACATTTTCAT
TGGCTTTATTCACATTATtgcaattttggaaaatttaaatcctgattAGG
AAACTGAGGGAAGCATTTGCTTTGGGGTCACAATCAGTAAGATTTAGACT
TGGGGCCggctgatattttttttaagaacagttgtatttgaattaatttt
aaaagaaattgcattttatttttgccaaaacgaggttaaaactttggggc
agcctggtgACCAAAAATTGTTCTAATTTCTGACgtcgaaaatgaaaaat
tagacAAATAATGTCAATGCactgaactttttttttttgaaaaactgatg
ccacaatgaattttcctaacaaCGAGCAATTCTATGCAGTGTAGGCCcat
cgtcatgcgaaaagaaccaatagTAATTGCGCAAAAAGCTGTAGCCCGCT
TCATAAAAGTAACCAGTTAACAATATGCTATAAAGAATTATGAGAAATTC
TTTTGCTAGGCTTCAAACTGACcattttatgtaaaaatatttttgaaatt
atttccaAATAATGTTGTACTTGAAAATTAAGGCTTTTTAGCAGTTTTAG
CCCTCGTCTTCAGTGACTTGCTTGCTTCACAATAACTGACCTGTGTAAAG
TTTAATTCTTTAaggttttttaacattttgcttggttttCCAGGTACCTT
TCATCTTTCATTTGGGGACATTATGAGGTTGAATGGTTTTTGATCCAATA
ATATTCGACTCCTTTCGAAATATCAAGGCTGTTAACATGCACCATTGTCT
CCTGGTATCAACTAAGATCATTATCTTATTTCATCCTGGTCAGAGAGCAC
CTTGCACAAGTGGTACCcttcaatttcatattttagaGCTCTCATTAAAA
TGAAATGAAGAATCAAGAAAAATCCTTCAAACAAATCTTTCAGGTAATTT
TAAAATTGTCATTACATCCATTTTTAGAATATTGTGTCTTTGGTAATTGT
TGAGAACATGTCATACCTGGTGTTGTGAGCAAGTCAAGCTGTTGCTGAAC
ACACTTTAGTACCTTGGCCATAGTCAAAAGTTTGGTTGTGAGATTTGAGT
TCCTTACagtcacttttaacaaaaagctGTCGTTATACCTTGTAGCATGC
TGTGTAGTAATCATcctttttattataaaaagacgttatgaactttaaaa
aaacgttAACAAGATGTTAGGTTACCCTTTTTTACAAAAGTGTTTTAATT
GATAATCAAcctatgtgttttttttttttttaattctctgccaaaatatt
caaaattcatAGGTCAAAAGCcactacagtatgtggcccccaaaacggcg
aNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNcatagttttgaaatatgatttagagggttttg
ggcataaatttatttgataaaatctttacagtatacccctggttgtcaaa
atgcaggtttggggccccgaaaacggaggtgtagttaaaatcaaattatt
gagcccagtggtaataggggggaaaactatgaacatttttgttttccctt
aaatttacgacctgccgatggatgtaaaatttatgatttttatgaaatat
ttcaagattttcgatattgcgaagtccaaactgaaaatctaaaaattttc
aaaatgacaattttgatctAACAActtcttaatcaagtttttgaaaacaa
atctcttttgaaaaaagttccattcatgtatggaataagctgtgaaaatt
ttagaaaaaaagcttaactgaaactgaaaatattaagctttaaagatatt
tttctcctatattttgcaaaaaaatgacagaatagacgatatcagctttc
cgaattctccctgaatgattacccatgatgcattgcgcaaaaaaacttca
cggacaatattgacttaccgaatttttttgctcaatgcatcatgggtaat
cattcggggagaatttcgttaagccgatatcgtctatttgccgtttttgc
tgattcagcgaaaacttttatataatgttaattttttgttgtaaactatt
aactcaaggtgataggactggaatttcaagattttttgctttttctcata
tttagaattttcggttttgtgaATGccgattctagggctccaaaatacgg
GACAAGCTGGAGtttttacaagctctttcttgatttggttggtcgttagc
ctgtaataaaacaattttgttactttttctaaagaacgcgtcatctctat
tactttaaatgaccaattaatgaagtatcttataaaaactccagaacatc
tccaaaatactggttgaccttcaagatgctatatcttttacccagcctct
aaagtcacagatgtatttgcattttctgaacggcatttgGTGTAAAAAGT
TTCCTTTACTTCGtgttcataacttattttcaatatccaaggagctagag
tgagttttatgcaatttttatctaattttggtgttaaaatatatccttta
gacgcaaatatgttattttgaatctgtctgaaaccagcaaaaacatgcTC
ATTTTTAAGTATAACCATCATTCTTTCAAAATAAACAAAAATCGTTTAAT
TCTGATAAATCTACAAGTCAGAATCTTCATTTTAATGAAAACCTCCGTTT
TGGGGGCCGTGTCATTGATTTGCTGTGTAGATCAAtcaaaaaaacatatt
tcataCTATGGAAAactttgttggaaagataacaGGTTGGGTGTAATTAT
AGACATGGCAAGAGATTCTTCAGAAAAAAGCGTAGCAGCGGAActcttta
aatttgaaaaacaaaaggaCAATTTCGTCATAACTTTACGAATTCAAACA
ACAATGAATGACTTAGACTtgcagcaaaataattatcgattTAGATGTTT
TTacgaaaaaataacttttgtttttaccgccttttaaCTTTTAAATGTCT
TTTTATGTTCTGACAAactgtcttgtgattcttatgttttattttgaatt
tttgaattgtttcttttctgccccccccccagcggtttgcatgAATGTGT
GAAAataaaatgcgtgaatgcgtgaattgaaaaaactttcgtgaacataa
aaatccactttttgattgcgtgaatgtgtgaatctgggctattttgtgcg
taaatgcgtgaattttcccttttttccaccgattataggaagttttccca
attttctgatgtttccctgatttttccttgattttcccgaaaattttcag
attttctgaaaaattgggtTATTGCAGTTGCGGTTATTACTCAaggtgaa
tgcgtgaatttcgaaaaaaaattgagcaCTTGTTGTGAAATGGTACTATG
AATTGCAGCAGATTGCAAGGATCAAATTCTAGATTATATCTTTCGAAATT
CACAAGGTTAAAAATACATtacttaaagtttcatgcttaTCGCAAACACA
TCTGATGATTGCGAtaagcatgaaactttaagtaATGTATTTTTAACCTT
GTGAATTTTCGAAAGATATAATCTATGATTCGCTCTACGAAGTATTNNNN
NNNNNNNNNNNNNNNNTGTATTTTTAACCTTGTGAATTTTCGAAAGATAT
AATCTATGATTCGCTCTACGAAGTATTGAGCACTATTTTAATGGTTGTCC
AACCAAGATGTTATAAGGATCAAATTCCAAattggaaaaatcaaaaattt
agataatgtaaattttggttgactaaatccttttttccttttttatgtaa
ataaacaattttcttttgagaaaattgaaCAGCTTCTTGATTCTGACAGA
TTCCGAGAATGCTGAACTTCGCCAAACGAGTTAGCGCAAGCAATGAATTT
CTTTTCTGCTTTCGCTTGCTCAACACAGCTTTTAATcattgtcttctttt
tcattttagattCGCTTTGGAACTTTAATCTTTGGTCCAGAGGCAATGTT
TTAAGTTCCAGTTCCAGTAAgtattttcactaaattttttttctataccC
ACATTTGGGTTCAAAGGTTTTACTGACTTGAGCTAATATATCGTTACGTT
CGTTTGCATGGAAAGATGGACTCattcaataattttcatttattttgtga
ttttcagaTAAATGTTGGGTATATCTTGCTATATCTTGGATAATGTGACC
TTGGTTGGATGGCTGACTCGTATGCAAGCAATTGGTATTTTGGTATAATT
TTTCCTATATCCTACAATCACAAATCActatttttcacttttgatcTTTC
GGGACCCTGCGATTCCTAAATAAAGGTGGTTCCTGTGATCAACAGGTTCC
CTCGAGAAGAGGTCATTTTTCTATTATAAGTACATAAAAACATAGTTTTA
GTAATTGTTGGAGAACATTGTAGTGACAATTTCAGGGACTTGCGCGTCTT
TCCttccaattcttttttttgcttatgtatTTTGATCGCGGCTTCTTTCC
TTCCTTCCTATAACTTTGTTGTTTGGAAATGAACCTTGTAAATCAACACC
CATATTGTAGTAATTGATGGAGGACATTGTAGTGAGAATTTTAGGAACTT
ACTTTTCaagttctttcttttgtttttggactttgatCGCGAGGagcttc
tttttttcttactataattttgttgtttggaaatGAACCTTGTAAATCAA
CACCCATAGTGAAGTAATTGTTGGAGGACATTGTAGTGAGAAATTCAGGG
ACTTACGCATTTTTCGAatccaattctttttttgcttgtgcACTCTTATT
GCCAACAGCTTTTTTCTTCCTTCCTATAACTTGATTGTTTGGAAATGAAC
CTTGTAAACCAACACTAAATTGTAGTAATTGTTGGAGGACATTGTAGTGA
GAATATCTCATCATTTTACTTAC
Gene-mRNA-Prot
The following transcript feature(s) are a part of this gene:
Feature NameUnique NameSpeciesType
TCONS_00071557TCONS_00071557Clytia hemisphaericatranscript
TCONS_00071558TCONS_00071558Clytia hemisphaericatranscript
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_61supercontigscaffold_61:5357..16279 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.25	0.43	1.26	1.15	0.55	0.52	0.1	0.2	0.14	0.18	0	0.07	0.06	0	0.15	0.03	0.04	0.14	0	0.19	0.06	0.04	0.22	0.1	0.09	0.14	0.08	0.08	0.07	0.23