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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00071558 ID=TCONS_00071558|Name=TCONS_00071558|organism=Clytia hemisphaerica|type=transcript|length=822bp
GGAATGAGGAGAGGAGATTTGCGGACCAGCTGCAAGAAGAAACTATAAAA
GACCATGAAGAGAAAAGTAAGATAACCGTAAATATTTAACCTTTGCAAAT
ACCCTCTAATTCGGATTATTTTAGCTTAGCTACTCCTTGAACCCATCTGA
ATATTGGCTAGGTGATAATGCTAAAATTTTGTCAAGGCTTATGCATTTAT
CACAGATTTTACCTTAGTGTATTTTTCATAAGATATTCGAGTTGTGAGTT
AACTTGACTATCACTCGTTCAATAAACAAACTTTGGAATGAAGCCATTGG
AACATTCCTAGCATCTGATACTATCATAATTAGATATGCACTAAGGAGAT
TGTTTTCTTTTGCTGGTTTTATTTCCCATTGGGTCGGAAGCTAACTTTCT
GGATTTTGGGACTTGCATTGGATTGTATTATCTTATTTTattagaatctt
ttttttttctctatagGTTAATAAGCTATTCCAATTGGAAATATAAAGAA
GTCGTTTTTTCGTGCCAGTTCTTGTTTCGTCATATAAGTATGAACCATCA
CTTCACCAGGAGATTTCGAGAAGAAAAAGCTTTATATGTGTTGTAGTCAA
GGAGATGCACAATCTATCCAGTGTTAATGCGGTACCTTTCATCTTTCATT
TGGGGACATTATGAGGTTGAATGGTTTTTGATCCAATAATATTCGACTCC
TTTCGAAATATCAAGGCTGTTAACATGCACCATTGTCTCCTGGTATCAAC
TAAGATCATTATCTTATTTCATCCTGGTCAGAGAGCACCTTGCACAAGTG
GTACCcttcaatttcatatttt Run BLAST on NCBI transcript from alignment at scaffold_61:8852..11240+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00071558 ID=TCONS_00071558|Name=TCONS_00071558|organism=Clytia hemisphaerica|type=transcript|length=2389bp|location=Sequence derived from alignment at scaffold_61:8852..11240+ (Clytia hemisphaerica)
GGAATGAGGAGAGGAGATTTGCGGACCAGCTGCAAGAAGAAACTATAAAA
GACCATGAAGAGAAAAGTAAGATAACCGTAAATATTTAACCTTTGCAAAT
ACCCTCTAATTCGGATTATTTTAGCTTAGCTACTCCTTGAACCCATCTGA
ATATTGGCTAGGTGATAATGCTAAAATTTTGTCAAGGCTTATGCATTTAT
CACAGATTTTACCTTAGTGTATTTTTCATAAGATATTCGAGTTGTGAGTT
AACTTGACTATCACTCGTTCAATAAACAAACTTTGGAATGAAGCCATTGG
AACATTCCTAGCATCTGATACTATCATAATTAGATATGCACTAAGGAGAT
TGTTTTCTTTTGCTGGTTTTATTTCCCATTGGGTCGGAAGCTAACTTTCT
GGATTTTGGGACTTGCATTGGATTGTATTATCTTATTTTattagaatctt
ttttttttctctatagGTTAATAAGCTATTCCAATTGGAAATATAAAGAA
GTCGTTTTTTCGTGCCAGTTCTTGTTTCGTCATATAAGTATGAACCATCA
CTTCACCAGGAGATTTCGAGAAGAAAAAGGTAAAACATAATTTGACATGA
CTTTAAGCAAAAATAGCTACTTTGTGCAACCAGCAGTAGATCATTCAGTA
tcagtattttttttaattgagaaacttttttttactcttttgagaaattt
tttgatttttgtgaagacAAACTTCCgaaatggtcaagaagtgtgttatt
aaaatcaaaggacaaaagccTCTGACTTAATCAATGATAGTTTGTTTGAA
TTATCTGTCCATTTCAGTCAGAAAAACTTACATAGTACCCTCTCTTttgg
tctaatctgtaaaatataagattttagggggtggtgtctctattttttac
agcaaaaatgaagtagtacctggtactaaatatgggtgggtggtactaaa
aagaaattgagtgagaaatcaagttagtaccccatgggttagtaccctgc
ctctgtATATATATACCCCCTGTCAGTatatcaataacaaaaaaagacga
atttattgttttcaattttttttctcacagCTACTTATTGCAATATCATT
tacaaatttaataaaatcttcAAACATTTTATTACCAAGTTTTGTAGCAT
CCCTTTAATCTGTTTCAGCTTTATATGTGTTGTAGTCAAGGAGATGCACA
ATCTATCCAGTGTTAATGCGGTAAGTTCTTTAACGCCTTTTTGGTTTGGT
ATTTCTTGCTTAATTTTAAAATCCATTTTACgcacattcaaaaacatttt
aaaattttacaacttgtCTTAATCGTGATTACAAAGGGTATAAGATTAGG
CATACGTTAATTTAATAAGTAGTTATTGATTACACAAAACATTCACTGGT
AACATTGTAGGAGAATTTATCTCTTCCTTTTAATATCTACGCCAACAAGG
ATACTACCAATCCCTTATTGAACGGTAGTTCATATTGTTCGATGTTTCTA
AGCACTGTAGTAAAGCTGGAGATAAAGACCCCTGTTGATCGCTTTACATT
TTCATTGGCTTTATTCACATTATtgcaattttggaaaatttaaatcctga
ttAGGAAACTGAGGGAAGCATTTGCTTTGGGGTCACAATCAGTAAGATTT
AGACTTGGGGCCggctgatattttttttaagaacagttgtatttgaatta
attttaaaagaaattgcattttatttttgccaaaacgaggttaaaacttt
ggggcagcctggtgACCAAAAATTGTTCTAATTTCTGACgtcgaaaatga
aaaattagacAAATAATGTCAATGCactgaactttttttttttgaaaaac
tgatgccacaatgaattttcctaacaaCGAGCAATTCTATGCAGTGTAGG
CCcatcgtcatgcgaaaagaaccaatagTAATTGCGCAAAAAGCTGTAGC
CCGCTTCATAAAAGTAACCAGTTAACAATATGCTATAAAGAATTATGAGA
AATTCTTTTGCTAGGCTTCAAACTGACcattttatgtaaaaatatttttg
aaattatttccaAATAATGTTGTACTTGAAAATTAAGGCTTTTTAGCAGT
TTTAGCCCTCGTCTTCAGTGACTTGCTTGCTTCACAATAACTGACCTGTG
TAAAGTTTAATTCTTTAaggttttttaacattttgcttggttttCCAGGT
ACCTTTCATCTTTCATTTGGGGACATTATGAGGTTGAATGGTTTTTGATC
CAATAATATTCGACTCCTTTCGAAATATCAAGGCTGTTAACATGCACCAT
TGTCTCCTGGTATCAACTAAGATCATTATCTTATTTCATCCTGGTCAGAG
AGCACCTTGCACAAGTGGTACCcttcaatttcatatttt
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00071558-exon-scaffold_61-1491911889:8852..9430 | TCONS_00071558-exon-scaffold_61-1491911889:8852..9430 | Clytia hemisphaerica | exon |
| TCONS_00071558-exon-scaffold_61-1510915933:8852..9430 | TCONS_00071558-exon-scaffold_61-1510915933:8852..9430 | Clytia hemisphaerica | exon |
| TCONS_00071558-exon-scaffold_61-1575043694:8852..9430 | TCONS_00071558-exon-scaffold_61-1575043694:8852..9430 | Clytia hemisphaerica | exon |
| TCONS_00071558-exon-scaffold_61-1491911889:10020..10071 | TCONS_00071558-exon-scaffold_61-1491911889:10020..10071 | Clytia hemisphaerica | exon |
| TCONS_00071558-exon-scaffold_61-1510915933:10020..10071 | TCONS_00071558-exon-scaffold_61-1510915933:10020..10071 | Clytia hemisphaerica | exon |
| TCONS_00071558-exon-scaffold_61-1575043694:10020..10071 | TCONS_00071558-exon-scaffold_61-1575043694:10020..10071 | Clytia hemisphaerica | exon |
| TCONS_00071558-exon-scaffold_61-1491911889:11050..11240 | TCONS_00071558-exon-scaffold_61-1491911889:11050..11240 | Clytia hemisphaerica | exon |
| TCONS_00071558-exon-scaffold_61-1510915933:11050..11240 | TCONS_00071558-exon-scaffold_61-1510915933:11050..11240 | Clytia hemisphaerica | exon |
| TCONS_00071558-exon-scaffold_61-1575043694:11050..11240 | TCONS_00071558-exon-scaffold_61-1575043694:11050..11240 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_61 | supercontig | scaffold_61:8852..11240 + |
Blast
The following BLAST results are available for this feature:
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