XLOC_042998 (gene) - C. hemisphaerica

Overview
NameXLOC_042998
Unique NameXLOC_042998
Typegene
OrganismClytia hemisphaerica (Jellyfish)

Sequence
The following sequences are available for this feature:

gene from alignment at scaffold_491:424953..434370-

Legend: gene
Hold the cursor over a type above to highlight its positions in the sequence below.
>XLOC_042998 ID=XLOC_042998|Name=XLOC_042998|organism=Clytia hemisphaerica|type=gene|length=9418bp|location=Sequence derived from alignment at scaffold_491:424953..434370- (Clytia hemisphaerica)
CAAATTTTGAGTACCTGTGTAGCTGGGCCCTTAAATTGTTGGTTACCATG
CTAGCATGAATTCAAGAATTACAAATATTTGCACAAGTGTGTTAACACCT
TTTTCAAGTTTCTTCAATGTGATGAATCAAATCAAAAGCTGTAATAATAT
CCTATTTGTAAAATGGGAAAACCAAAGTGAAAATTTTTATTTCTGAAGTA
TACAACTTTTAAATGATTATAATAATGTTAAGAAAATTGGAAAAAAGTTA
AGTATTCTAAAACTCAAAATAGTGCCGAATACAATTTAGTTTGCCGTGCC
AGCTCGGCGCTCGCACCAAAACAAGCAGCTTTTCGGAAAATGGTACAAGA
ATTTCAATCACCAGACTCGGATGACTGTCACGGTTTGGGCTTCATCAAAC
CTCCAAAGAAAATGCCTTGTTGTGGACCAAAATTATCAAATTGTTGCTTT
GTATTAAGCATATGGGGAATGATTATGCTGGTAAGTTTTTAATATTGAAA
ATTTGAAGAAATTATAGGTAAGCATTTTAGCTCAGAAAGTTAGAGAATTT
TTTTCATACCATCGGCATGCATCGATCGCCCCCATCAAATTACAAAAACT
TACAACTGGTCGCAGAAAATTCGCATTTAAAAATTATATTTGCCTGTTGA
TACAACAAATAAAGAATGTTTTTTTATTTTGAGAAAAGTTAAAAAGATTC
CACTGACCATTCTTTATGTTGTGGTGTTTTTCTCTTCTGCTCTGCGGGTG
AAAAAGCACAGACTTTAACCGGCTAGTACGAAACGCAGGTCCTAGGTTAC
AGGTTTCAGGGCCAGGGCTTAGGTTTCAGGGCCAGGGTTCAGGTTTCAGG
GCCAGGTTTCAGAGCAAGGGTTCAGGTTTTAGAGCAAGGGTTCAGTTTAA
ATTTGTCTACATTTCAGACCAGAATGTTCTATGGTATATATATTCTGCAG
ACCATTCAGTTAGTGGAAGTAATTTTAAGCATGTTCAAAGTTTACAATAA
ACGTAGTCGTCTAAGAAAACAGCTATTTTTACGACCCACGGCATGGCCCG
AACATGTTCGGGCCTCTTGATTAATACTTTTTAAAAATGGCCCGCGCGGG
CCCGCGCAGTTTCGGACCATGTTCGGGCCAGATTTTTGNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGATCGCGCGTG
TAATTTCAGGACCCAATATTTATATTTTAAATTCCTTATTTTAGCAAACA
AATTTAAAAATCTTCATCTTTATTCAAATATATATTGTTCAAATTATAAA
AGTTAATCATCTATTTTCCAATTAAGTTAGGAAAATTATTAAAAAGAATG
ATTTGAATCTTACATAATATGGTCTTCTTTTTATTCTTTATCCCGTTCCT
GTTCACTTTTTCAAAGGGATGCGTGATTATTGACATTTTGTTTGTTGTTG
ATTTGTGTAATCGCGATTAAAGAAACACGTGCGTTTGGTTTGGGAACGCG
AAACACGAATGCAAACTACCCATGTCTAAACTTTTCAATATATCTCCAGA
ACTAACAGATTTTTTGAAATTCTGTAAAGAGGTCTAAGTTCCTGAATTGT
TTTACTATGTTCTGTGAAAAAATCATAACNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAAAAGATATAGTCAAAT
CTTGTAGGGTCATTTTTCAAAATTTTTTTGCCAAATTCGATTTTCGCATT
TCGCCATTTTACCCTACGCAAACGCACGTGGAAAACAATTTGCGCGATAT
CGTGATCAGACTTACCGCTGGGGAGCCTTTATAATAGTACTTATTATATT
TACAAAAAATTCTTTAGAAAAACACAAATTGTTTGAGGGTTTTAGAGTAG
AACTTTACGGGGACGTCCTTAACCTGCTTTTTTGTCACTTTGGTTACCAA
AGCCTTTTATAAAAAAGATTTAACAGTCGCACTTTATTCGTTCTAATGTT
AAAAACTACTTCACTAAACCTGCGGTAAATCTGGCGGATAGGGAAGTGAA
ATCGAGGGATCGAAGTTGCAGTTATATATATGGCCCGAACATGGCCCGAG
CAAATCCGTATCAATTGTAAATGCATGGTCCGAACATGGTCCGAGCAAAA
TGTTCGGGCCGATTCAATAATACTTTTTTGTGGCCCGAGCATGGTCCGAA
CAGGCCCGAACATGTTCGGGCCATGCCGTGGGTCGTCTATTTTTTAGAAT
CTTCCTTACAATCTAGTTTTTCTATTTATAAAAAGTAGATTGCTGACGTG
TGGAAAGGAATTTCCGCATGACTGATCCTTTTGTTTCGATAATAACATCA
AAGCGGGAATTAATTTTCTTCTCAATTCTTTCTTTCCTTTTTCTTTCTTA
TCAGTTTACGCTTTCTCTCACTACTTTCAAAGTGTGGTTAGCTCAAGCGG
TTACCGTAAGTTGGTCTAATATTGACATCCCTCGTCTAATTCCGACACCT
TTCTTTAGAGACAGGAATAATATGAAAGTTTGAACCACTGATTGAAAAAG
GATTATTTCTCCTTGAACACTAAGCAGAGAAAAATAGCTTTGACTTTTCT
ATCAATTTCAGCTGATAAAAAGGGTGTCGGAATTGGAAGAGGGATTAGAT
AGTCTCATAAGCATTTTTTTAATTCTTGATTTTTTTTGTGATTTTGATGA
AAAAATGTAATTGTGAGCAGAATAATGAAGAAAAATAAAAAAAATTCTAT
CATTCCTCCTGTAAAGAAATATCATCGCATCAAAATAAAAAAGCTTAAGT
CCATTTTTCGGAAGTTATAACCATACCGATGCTTTACACCCCATTTTTTT
ACCATCTTTTTGGCTTAAATCCATCAAAAACCAACCTGAAGTGGCCCAAC
TTTAAGCTTTTAGAAAATATAAGAATTTTAGTGTTCACATTATTTTACGG
GTAAAAAAGCCCTAAGTCACATCAGTTTAGGGCAAAAAAGCCTGAAGACC
AGTGTGGAAAAAATTATGGACCCAAGGCTTTTTTAACACAAAAATATTTC
AGATGTTAATGCATAATGGTTTTTCAGGATTTAAGAAAAAATAATTTAAA
GTCGATTTTCTCAAAACAACAAAAATGGACTTAACCCTATTCATACTAGG
CTTTTAGGGGCAGTTCAAAACTAGGGGGGCTTTCCTGTTCCACCCCTAAG
CTTTTGATCTAGCAGGTCTTTTTGGATGAAATTTGGCACACAAGACCCTT
GTCATAGAAGGAAACTTTTGACAAAAAAAATTTTTGATGACGCACTCATC
ATGCCCAAAGTGAGCAAAAACCAAAAATTTCCTTTGTTCTTTTGAATAGC
TATTGTATTCTAACAAAGGCTTTAGAAAAACGTTCCCTGAGTCTATAATG
CTTATTTTATCCTAAATATTCAATAAAATACGCTTTAAACGATATAACAT
AAAAAATAAATTTGTATTGGGAATGTGTCAATTTTTGTGACACCTTACTG
TCAGAAATGTCACCATGCTCAAGGTGTGAAAATTGTTAGGTGTCAAATTT
TTTTTTATTTTGAAGCTACCTTAAAGGAAGAAATTTTGGCGGAAAGAAAA
TTTGGCGGATTTGACTGAAATCCGCCAAATTAAGTTCCCGCCAAAATTTC
TTTTTTCTGCCATCCGCCAAATTAAATTCCCGCCAAATTAAACATTTTGA
AAATATGATCTCTTTTAAGGTGTTTTTGCTATTTTTTCGCTGTTTTGACG
CCATCTTAAGGTTAATTTTTTAAGCGACCGCTAAATTAAATTCCCGCCAA
ATTAAACATTTTGAAAATATGATCTCTTTTAAGGTGTTTTTGCTATTTTT
TCGCTGTTTTGACGCCATCTTAAGGTTAATTTTTTAAGCGACCGCTAAAT
TAAATTCCCGCCAAATTTAGTTTTTTCGTCTATCCGCCAAATTAAATTCC
CTCTGAAAAAACTTTTTTGGCCATCCGCCAAATTAAATTCCCTCTGAAAA
AACTTTTTTGGCCATCCGCCAAATTAAATTCCCGCCAAAATTTCTTCCTT
TAAGGTAAATAAAAGTTAGGAATTTACAGAAAATTTCATCCCAAAAGCTC
TATTATTTCAGGAGATATTAACAATAGTTGCACCCCATAGCAGGAAAAGC
CCCTCCCTTACGAATAGGGTTAAAGCTTTTTGGACCTACCTCCAGGTACC
CTGGTGGAGGTCCTATAAATTAACTATTGTCTGTTCGTTCGTTCGTCTGT
CCGTTCGTTCGTCCGTATGTTACCAGCTTTTCCCAGGATTGGCTCATTAG
TTTTTTCTGATTTTTGGCACGATGATGAAAAATTTTTCCATCCTGATTTT
TTGCTCAAAGATGCATATTTAAACAATGCTCAAAACATGTCTGATTTGTG
AGATAAATTTTTTTCTGGCCGAAAATGCCAGAAATATGCCGGAAATTGCC
GTTTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTTTCTAGATTTTCAT
TGGACTTTTTCCTTATAATTGGTTGTTTTTTCATTCAAAAACATTATTAA
TAGCAATGCCCACCATCAAGCATGTTTCAATATTCAATAAAATTGATTTT
TGAAGCCGGAACTATTCAAAAATTGGCGGAACAACCTATTTTCGCCGGAA
AGACAGTATTTCTTGAATCTCTCAAGCTGTACTTTATATTTTTTTATGAA
ATTTTGCACACTGATGCAAAATGACAATACCTAAAATGTGACGGAGCCCG
ATAACGGATAACGGTAGCAGAAACTGAATCTTTAATTGAGTTTTGGAACT
CAATCATTATGAAAAATAAAATTAGCTATGGAAAAATGTAAATTAGTGAA
AAATGTCTTCAAATATTAGATATTATAGCACTTAATTCCCCCAAAAGGCA
TAATTTTCTTGGGGCTTTGCCCCATAGACCACACCAGGACTGTCCTGGAC
CAGTTGGTTGGGCTGTTTACAAGGCCCCAGACCTCCTGTCTGCTTTTTTC
GAGCCTAAGGCACATTCTGAAACTCAATCTTTTGATTAAAAACGGTAGCA
GCTCCAAATCCTGGAAATTTGAGTTATTTTTTTCTTTCAAAGCAAGAAAG
TAACTGAAAGTAATCAAATCACCCACCCGTTTTTTGAAAAGTAGTAAGAC
GTTTTGGTATATGTGACCCTCCAAACCATTTGGAGTACATTAAAAACGAG
ACCGGTCTTGGTGCGGTCGTGCTCGTGCCGCTTTCGGACTGGTTAATTGT
GCGTGTAAAAGTTGAAAAAAGCGGCCAGAAGACCGTACAGTACCGTATGG
TACGTGCGCGTACAAAACGCCGACTAAAGCGGACGATGGTGCGGTCCCAG
CCGACTAAAGCAGACGATGGTGCGGTCCCCGCCGTTTGTTTATATTTTTT
TCGGTTGCCATAAGAATTTCAGCCTCGAGTTCAAGCAAGCAAAACAACAA
CTTGTTTCTGAACACACAAAAAGAACTTGCGATGTTTGATGTTCGATGCT
CACATGTGAATTCTTGAGTTCAACTTTGTTTATTTTGCCAAACGTTATAA
AATCGGCGAACAGTCATGTAAAAAACCNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNTTTAGTGACCGATCGAGTGCGTTTGAATGGATTTTTAGAAAAGATTT
TTGGATGATTTCTGGCCGATACAAAGGTATCATTTTACCGCACGGTAAAT
CGTTTCGCTGCTTTTTTGCCGCACATTTTATCGATCTGTCCGCACCAAGA
CCGGTCTCATTTTTAATGTACTCCAAATCGCTTGGGGGGTCACATATAAT
GAAATTGGCTGGAATAGAAGACGTTGGAAATTTTTTCTCTTTCAATTGAA
TTTGTGTTCTTAAGAAAAATTTAAAAAAGGTAGCTTTTATCATTCAAGCG
AAACACTAACTGTAAACACTTTATCAATAAAGACATGAAAGGTCAGGTGT
GATTACATTCCATTCATTCCTCACTTTTTTGTTTGATTTCTCCAAACAAC
CTGTTCAAAATGAGAGCTAAGTAAAGAGGTTAGTAATTTGAAAAAGCGAA
TCTGCAATGTAGACAATTTTAACCTGAACCCTGGCCCTGAAATCTGTAAC
CTGAATCTGCGTTTCGTACTGTGAAGTAGGGTAATTTGCATCAGTGGAGA
GAAACTTGCATAGCCATCAAATGACTGACCAATCAAAGCAGCAAAATTTC
ATAAGAAATCAACTACACAACTCCGCTCTACCATTTTTGTTTTGATTTAA
CTTTGCATTTTAATGACCAGCCAGGTCATTCATTTGAGGGCTATGCATGT
TAGCCTCTACTGATGCAAGTTACCTTCAACTGTACGCAGACAAGGAAAAT
GCCCGGCATGAAATGTACAGTGTTAAGCAGTATAGTCCCAACTCTTTATA
TAAAGTTTTACAGGAAATGCATTTTTTGACTTTGTACCCAATGCTGCACA
CAAGCACTTAAGCCAAAAAGTCCCAAACGAAATCAGTTTGTTGAAGTTTG
TAAAAAAACACAACATTGAGAGCTTTCAAATTCAGAATGTGAAAAGCGCA
GTAACAAATGGAATGTAGTTTTGAATCGGTTGAAGGGGTAGCATCTCTAG
GATATCTGGTGGAAGGTTTGAAACGTAATCCACAAATCCCATTTATTGAG
CTTTGCTTCAGACAGGATGATGTCTTGTTTGTCATTAGTAACGACCTTGG
ACACCACCGTACATTGCGCATGTCTGATAAAAATCTCTGCATCTGGGTGC
CAGATAAAGTACAATTGTAAGTACTGTACAGTTATTTTCAAATTATATTT
TAGGCGATTATGGGAATTCTGTTTCGAGTTCAATCGGTAGCTTTGATTGA
AGACATCCCAAAAGGCGGAACTGAAGAAGAAGGCTTTCAAACAGCTTCCA
CGTAAGACCTGGATCTTTTTCTAAAACTAAGTTTAAAATAGCGTCAGCCT
GGGTTTAGGTCCAAGGCAAAAATTAGGTCCCCCCTGAGTTTTAAGTCCCC
CCAAAGATTTATGAATTTTTTGTTAGCCCCCTAGGACTTTTGACCCTAGA
CACTTTCAAAAAATTTATCCAGTAAAAAAGGTTTTTCCAGTGTAAATTGT
GTTAAGTTCTAAGTTAAAGATAAAATATTTTGCACACTTTCTATAGCTGA
ATTATTTTAGCCCCACGTTAAGTGATGAGATTTTAGCTACCCCCAAGTAC
AAAGGTCCCCCCAAAAAAGTGGTGTACTTCCAGCCCCTCCTTTTTTGGGA
AAAATTTAGGGTGTAACCCCCCCCCCCAACCAGCCGGGGGGCTGACGCTA
TGTTTAACATGCAACGTTTTCAACGATTTGAAAAATAATTTAACAAGGAA
AAACTCTTAATGTTTATCATTGAAGATGACTATGTTTTCATTTTACAGTA
ATTGTTTCATCGCTGCTGGGTTATATGTTGGTGTTTTCATTTTTACGAGT
TATCAAAAGTATGCGATCAGCAGAGGATATTCTCGCTTATAAAAAAGGTA
AGGTTTTGTTTATTGCTTTGTCTTAACATTTCTATTTCTACTTCTATTTG
GTTGAGTTGCAGGAGGCTTTGAGGCCTATTTTCGCAACTCTATTTCAATG
AGCGCCCCGTCCAGCCCCGTCAGCACCTTGGACTGACTACCTAATTCTCC
TCACATGGCATGGGTTGACCCGGGCGAAGGTTTATTCACTTAGGTTTATT
GGTTTATTGGTTTCAAATATAGTGATATATTGTACAAACCCCCTGTTCAT
TTAAAAGCTATTTAATCTAGAGTCAAATTAATGAAAATATGATATCAATG
CCTTAGGCTTAAAGTGGCAAAAAAATAAGAATGATACTATTTCAGGCTTG
AAGTGACAAAAAAATAAGAACAGCCGAGCCTCTCCCAAGATTTATTGGTT
TGAGTCTGCATCCCTTTTAAGGAACTCTTACTGTCAACTTACCTAGCTTA
GGATGTGTATTCTTTAAAAACGAATAGATTTCTACCAAGCATCTTTCTTT
ATCAAAGAATCGTTAGAGTAGCGTGTCTTAATAAGTAAGCGAAACAGCTC
ATTTGTTTCAAATCAGCTATCAGATTGATGTAGAAAATTCTTTCTTTATT
ATTTAGGATACTGGACGAATAGAAGACACATATTTTTAGATCAAAATTAA
AATATTTTTTTATACTCAATATTGAAAATGTAGAATCTTATAAATATAAC
AACTTAACTTCGGAGTCCGTCAATCGTGGACACTTTGTCTCTCCATGACA
CCCCGATATCGTTTATTAATATTTGTCCAAATGGCACACACCTTTGTGTT
GTCGAAATTTTTTATCGAATTTTCGTTTTGTTTACTTTATTGGATATGAC
AAAATGAGTTTTTTGTATTTCACTTTTTTGAAAGTCAATCTGTTTACTGC
CATCATTTAAAGGGTTTATTTTAGTATTCTATTTTTCTTTTATCATTTTG
TTTTTTCACTTTAAATTATTGTCCCATACTTACAACGAAATTACTCGAAC
TTAAAATTATAAAGTTATTTTTTAATTGAATTTACCAAAACAAAAGAAAA
TACAATCGATTCAAGGAT
Gene-mRNA-Prot
The following transcript feature(s) are a part of this gene:
Feature NameUnique NameSpeciesType
TCONS_00069009TCONS_00069009Clytia hemisphaericatranscript
TCONS_00069008TCONS_00069008Clytia hemisphaericatranscript
The following polypeptide feature(s) derives from this gene:
Feature NameUnique NameSpeciesType
TCONS_00069008-proteinTCONS_00069008-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_491supercontigscaffold_491:424953..434370 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
286.55	304.68	251.29	255.53	111.07	84.01	136.84	138.66	163.23	128.47	116.92	135.26	86.2	79.21	111.54	114.63	110.21	102.63	97.74	103.86	101.74	97.76	143.96	125.08	48.11	48.46	107.04	92.98	171.4	153.92