XLOC_042933 (gene) - C. hemisphaerica

Overview
NameXLOC_042933
Unique NameXLOC_042933
Typegene
OrganismClytia hemisphaerica (Jellyfish)

Sequence
The following sequences are available for this feature:

gene from alignment at scaffold_49:911906..924883-

Legend: gene
Hold the cursor over a type above to highlight its positions in the sequence below.
>XLOC_042933 ID=XLOC_042933|Name=XLOC_042933|organism=Clytia hemisphaerica|type=gene|length=12978bp|location=Sequence derived from alignment at scaffold_49:911906..924883- (Clytia hemisphaerica)
GCAGCATGTGCCGCCATGTGCTTTTGAACTTTGTTGTTACGAAATTTACC
GGGTGCCGAATATAAATGGCATACATAAACCATGAACTTTCCGGACAGGC
TATTTAAGTCGGCAGCCGTAAATTTGGCTTCCCGTTCGAGTCAGTTTCTT
CGAGAATTTTTCAGAAATTTTCAGAAACAAGCGGCGATTCTCAAGTCACA
CTCACATCAAATTTCTTTCGACCCTTCCACAAGCAAATATGAAATTTGGA
CAACATATCAAGCTTCCAGAGGTATACATTTTTGTCATTTTAAGTTTAAT
GCTTGTATGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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CTTGAAAAACGCGATCACTACGGAGTCAGAGGCATTGTTAATGACTGGTT
CCGATCTTACCTCACTAACCGCTCCCAGTATGTTTCTCTCTCAGGCTCAA
ATTCCCTTTTAAAATCTATTAATCATGGAGTTCCTCAGGGTTCAGTCTTG
GGTCCTCTGCTGTTCTTGTTGTATATAAACGATCTTCTNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNTTCTTCTAGGTTCCCCATTGTAT
TAGAGAAATCTATTTTTTTTTGTAAGGGGTTATCCTGCTGTGTTGCAGCG
AAAATATATTCAATTCAATTCAATTCTTCCTTCAAAATTCCTTGAAAATT
CAGTACATGCAATATCTATTGCAAACACGCTGGCAGTGCCTAAGAATTTT
TTCTGTAAGGCTGTTTGTAAAAAATCCCTTGGTTCCCGTCATTCCAACCA
TCAAAAAGTGGATCGGTTGGTCGGTCAGGTGAAATATATTTTCTGTTTGA
ATGAAACAGTCCGAGAAGGTGGACTTTTCCTTAGAAAAAGGCGACAAACA
GACGTTTGATCGCCCTAAGCCTCTTTTTCAGGGTTTGTTGTCACGTATAA
ATGAGTATTTTATTAAGAGATAAAATTGAACCTATTATATATTCCTACTA
TAATATTACTAGTATTATAGAGTCCCCTGCCCAGTTGGCGACCGGTCTAG
TTGGCGACCGAACGTCTTTGAACCCAGAAAAGTCATACAAAAACAAACCT
CTGGAGAATTTCTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNGGATTTCCCGTAGAAATTATGCGATGAAAAAT
CCGGGGGTCAAAGAATGAAGACTTTTTATTTCCGAACAAGTTATCTTTGC
TTATAACGAAATATTACTTTTCAATATATTTGCTAAATATAATGTTTGAT
TACAAAAATACTTTACACTGTATTTAAAGTTTGAAAAAGTCGATTCTACT
ATTCTACTTAGCTCTTTGTTTTTCATGTCTAACCCCCGTCTCAAAAGAAG
TCCCAGAATCCCGAGATTTTTGCAGTCGGGCGTTCAAAACAAAGGCGTTT
CTATTTTTCCGCCCACTTACGAATTTTTCTTTATAATAGGCATTTAAAAT
ATCAAATTTAAAAATAATAGTATAAAACCTTATTTTCTACCGTATAGTAT
TTCTTCTGTAAAACGAAAAAACAAAATACACTAGAAAAATGAAGAATTTA
CGAATGTTATCAAGCCACCCAAAATGAACTTTCATTCGTCCGCGTCATCG
AATTGTTGTATACGTCACGATCTATTGTCAACCATTGTCCAATCCCGTAA
GCGATTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNCCAAAAATTTCGGTCGCCAACTGGGCAGGGTACTCTATAATA
TATACTACTTTAACAGATATTATATATTAAATGTGTAATATACTATATGT
AATGTAATATACTAACTACTACTAGTTCTATATGTTCTACTCATAGCTGT
CAACTCTCCCGCATTGAGCGGGAGACTCCCGCATGTGAACAATTTCTCTC
GCGTGAAGAAAATTTTGCCAAATCTCCCGCATTTTTGGGATTTTCTCCTG
CATCTCCCGCATTTCCAAAAATTTTCCGGTTTTGGAAAAACCAAACGTCA
AAATTTCTGGATTTTGAAAGATCAGAACGAAAAATTCCCCAATTTTCCCA
TAAAATCAGATTTTACAAGAAAATTTCCCTGATTTCCCGATTTTCCGATT
TTGAAAAATCGGATTATCGGGGAAAATTTTTCCGGCATTTTTGTGAGGCG
CAGTTGACAGCTATGTCTACTGTTCTACACATTCTATGCGTTCTACTGTT
CTACCGTGAGTGGTCCTAAATCCGACAGCCCGGCCTAAATCCGATGGGGT
CTTTCAAAGATACAAACTAAAATAAAAACAATCTTTCGCTGTGACGCAAT
GAAGATACCAAAGTGTCAACTAAGCTTAAAAGATTTGATACACTGGACCA
ATTGAACCAGATAACAATAATTGCTTCTTATATATACAAAATATAATTTT
TTTATTACAAAATTGTTAACGTTTTAAACACGAGCAATAGATTCAGAATA
ATAGAATAATAGAGGTAATTATTTTTACAACTCACACTTTTTTGATTTGA
CAACATCTTGACATTATAGTCATCTTGTTAGATGTTTTGTTTCGAGAGTT
TTTGCAATTAGTTTATTGTTCAACTTGGAGAGGAAATGTTTGTAAACATG
TAATTTTTTTTCATAGCAGTTATTTGGGGGGTCGGATTTAGGCAGGGTTG
TCAGATTTAGGACCTCTCACGGTATATGTTCTATACGTTCTGTATGTTCT
ACTGTTCCATACGTTCTGTACGTTCTACTGTTCTATTTGTTCTATATGTT
CTATACGTACTGTATGTTCTACTGTTCTATACGTTCTGTATGTTCTATAC
GTTCTACTGTTCTATACGTTCTATACGTTATGTACGTTCTACTGTTCTAT
ATGTTCTACCGTTTTATATGTTCTACTGTTCTATACGTTCTACTGTTCTA
TACGTTCTACTGTTCTATACGTTCTACTTTTCTATACGTTCTACTTTTCT
ATACGTTCTAGTGTTCTATGCGTTCTAGTGTTCTATGCGTTATAGTGTTC
TATGTCGTCGCAGTAAAATAAGAGTGCTTTATGTCCAAAATCACTGTTTT
GCAGAAATCGAGTTTAAAGTTTTCATTATTTGCTTGAGCCTAATGACGAA
GACTTATTGTAAAATTTTCAAGTGTTTTCACTAATTCTGCCTTTTTGGTA
GTTGTGTATCACATTTTTGAAAAAAAAAATCAATGAGTGCGCCATTGAGT
GTACCATAATGGCGCGCATTCGTCAACAGAAATGGACATAAGGCATTTTT
CTTCTATAAATTCCACTGGAAAATGGACTTAAGTATAAATTGCTTAATAA
AAGTGATGAAAACAATCCCACAATATCAATTAAGAAACTGATAAACAAAA
AGCAGGTAGGTATAATAAGTTTCTAGTCGTTTTATATCAAGAATCTATTC
TTAATCTATCAATTCATAACATTTAAATTAGCTTAAGTCCACTTTATTCT
AGCACATGTAAAAGTAAAAAGCCTTATGTCCAAATTTGGACAGCTTTCTC
CCAAATGAGATAAAATCCAAGAAATCTAAAGTCACCATTCAAAAGAGCAC
AGCCTTGTGTCCCAAAAAATGTAAAAAAATTTTTTTTCAAAAAATGGACA
TAAGGCACTCTTATTCTACTGCGACGATGTGTTCTATGCGCTCTAGTGTT
CTAGTGTTCTATGCGTTCTATACATTCTAGTGTTCTATGCGTTCTAGTGT
TCTAGTGTTCTATGCGTTCTAGTGTTCTATACGTTCTATGTGTTCTAGTG
TTCTGTACGTTCTAGTGTTTTATATGTTCTAGTATTTTATGCGTTCTAGT
GTTTTATGCGTTCTAGTGTTCTATGCGTTCTATGCGTTCTAGTGTTATAT
GTTCTATACGTTCTATGCGTTCTATACGTTCTAGTGTTCTATACGTTCTT
TGTGTTCTTTGAGTATCGAAAAACAGGAGTGATAAAAAAAGACGGTCCAA
ACAACAACAAGGTTGTGTGGACAAATCTTTGAACAAGGCTTGAGAATCTT
TCACTGAAACACTACACTCTCGTTAAGACCCAAAAAAAGGCCTCCTTTAT
AATTCTATTACAAAAGAGACACCTGTTCTGTTGTCATAGCAAATGTCCAA
GGACTGATAGCTGCTGCAGAGATCCAACGCCCGATCTTCAGATAAAACTT
ATAAAAATGTTTTCTTTGAATTTTTTTTTTTAAGATTGAAAAAAACCCCA
TGACGGAGGAAATTGGACTAGAACGTATAGAACACTAAAACGTATAGAAC
ACTAAAATGTATAGAACACATAGAACACTAGAACACATAGAACACTAGAA
CGTTAAAACACTAGAATGTTAAAACACTAGAACACATAGAACGTATAGAA
CACTAGAACATATAGAACACTAGAACGTATAGAACACTAAAATGTATAAA
ACACTAGAACACTAGAACACATAGAATGCTTAGAACACTAGAACGCATAG
AACACATAGAACACTAGAACTCATAGAACACTAGAATGTTAAAACACTAG
AACGTTAAAACACTAGAACGTATAGAACACTAGAACGTATAGAACACTAG
AACGCATAGAACACTAGAACAGTAGAATATATAGAACATATAGAACATAC
AGAACGAATAGAACAGTAGAACATACAGAACATATAGAACGAATAGAACA
TATAGAACGCATAGAACATATAGAACATATAGAACATAAAGAGCATATAG
AACAGTAGAACATAAAGAGCATATAGAACAGTAGAACATACAGAACGTAT
AGAACAGTAGAACATATAGAACGTATAGAACAGTAGAACATACAGAATGT
ATAGAACAGTAGAACGTATAGAACAGTAGAACATAACACTTTTAAGGTTA
ATAATCTAGACAGGGTAAACCGCCATTGTTCTATACGTTCTACTGTTCTA
TACGTTCTACTGTTCTAGAACAGTAGAACATATAGAACAGTAGAACATAC
AGAACGTATAGAACATACAGAACGTATAGAACAGTAGAACGTATAGAACA
GTTGAAAGTATAGAACTATGGCGGTTTACCTTGGTCTAGATTATTAACCT
TAAAAGTGTGAGCAAATTCGGCGGCTGGCAAGCTGATGGCTGACAAGCTG
ATGGCTGACATTTTGAATGATACAAAAAACACACTTTTTAATAGATTCTC
AATTTTTCCTTCTTCATATGTAATACATGGTTAAAAGTAGCTAAAAATTA
GATTTGGTGGCTTACATACCTTAATAAGAGCACAATTTGGCGGCTTACAG
GTAGATGCAACCAAATGAATAGGCAAAAATCTTTCAGCTTCATGAGCTTT
AATTTGAGTAATTGAACCATTGAAAAGATGAATTATTCAGCTCCAATGTT
AAATGATGAGATTTCAACTCCTCTCAAGTATTTGAAACTTCTTTAGCCCC
TCCTATTTTCAGCTTTTTCGAGGGTGTAGCCCCCCCCCCCCACAAACTAA
GCTAATTATATAAGCTTCATTGACTAACTACTTATATATCTGATTTATTT
TTCAAAAATGAATTATATTTTTTTGTTTCAGCTTGCTCCACTTTTCTTCT
GTACTGGAATCGGAATGGGAATGGCCGGCTTGTACTTGTTGAGATTGGCC
ACCAAAGGACCAGAAGTCACGTAAGTCAATTTAGATGACGATATCAGTGT
TGCAACTTTTCTGCTGTCGTGTTATTTATCCAAATAACAAGCCTTTAGAA
TCAGAAATTTGAAAGAATCCAAGTCTGCTACAGACATTTCGCCTAGATTA
ATCAAAGCTAGTTGAAACACTTTATTATTCCCACCAGTAGAAAAAGTGAA
AAAAAGGGGGTTATACTTAAAAAGACCCCGATGAAAACCCATCAAGTTTC
TAACGGGGTCCTAGTTATATTGTCAAGAAATTTCATAAAATTGAGTTTAT
TCTAGATCCTGTCCAGATTCACTAAAGTCTTCTTCACTGTTTCTTCCTCT
TTATCTTATTATTTTTCATCTATTTTCTAATATTCTACTGAAATGCCCTA
CAGATTCTACATTTAGCAGTTTTAGATACCTTTTAAGGGAACTAATTTTA
CTAATTTTTGCGGTCAAACTCAAAAGAAATTTGAAAAACTCGCATTTTGA
GGGAATTAATCTCCACGGTTTTGCCTTAATTTAGACAAATTGCTTTCATT
CTCCTAGGGATTTTCTAAAATTTTGAGACGTGGCCAAATTTACTATTCAC
GGGCTTTAATTTTCGCTGAAAAACCACCAAAAAAAGGCGCAAATTAGTTC
CCTTAACAGTTAAAGGTATCATAAAATTGTACGCGGTCAATCGCGTAGCT
TTACTTTATGAGTCATATTTTATAGATCGCTGATCGCTTCGTATTAACTC
TTTATTTACAATTTAGCTGGTCACGTGTCAAGAACCCAGAACCATGGCAA
GTCATTGGACCACAACATCGTATTAAAGTAAGTATAATTTAACTGTTGAA
ACTTTGATATTTGTGTAATGAAAGGATAGAATATAATTTTATACATATTT
ACCATACAATGGCCAATTAATCTATTTTGACTAAGGAACTTTGCTTTAGA
GTTTATCTGAGTTTACCACAGCTGTACACAACAGTAATTTTTTGATACGT
AAACTTTTACAATGATGTCAGATCTATAATACCATGTAATGCATTCGGGT
ATAATTTAGGCGTACAAACTTTCGCGATTTTCGCTATTTTTACCCCCTTT
GAAAATTCTTTAAGTGACCATTCGCGAAAGTTTATGCATGCGAAAAATTC
CTGACAGAAAAGTTCTTCAACTAGATATGTGACACTTTTTAGAATGTCAA
AGCGTCATAAGGGAAGGACACAAGTTTCGACATAATTCAAACACTATTTG
TCCTTCTAAGCCATCTTCTCGTGGGAAAATTTTCATTTTTTTTGTCTGGA
GCTGATTTCCGAAAATTTATGCTTGCGAAAATAATTTCGTCAAATTTGCG
AAGGTAAATGTCGCTGATTGTGCGATGTTTCGACCTTGCGAAAGTTTGTA
CGGTTAAAGTACAGTTTCATAAGTACAGTTTCGTTTTGCTTTTATTTTTC
AGTTTTACAGTCCACACGATTACGCCAAACTCGACCGACCAGCACCTCAA
GAAGCGTATGATGCACTCAAAGAATAAATGAATAACTTTTTATTATTTTT
TTTTTGTAAAATTCTCACTTAAGATCAATGGTTGTGAATAAATAAGACCC
ATTTACCCTTTAATTAATTCAAACTTGTTGTCAGTTTCAATAAATAAAAA
TGTTACAATATACGACTAAATATAAATCTTGCCTGTTTCGGTCTATTGAA
TGTCCTTCCAATATTATTACATTATCGACTTTTTACATGCCTTTCACCTC
AAAATCATTTACAAGGGAACTTATTTTGGCGAATTTGTCGGGTTCAGACA
AAAATCGCCAACATTAGTAGTGCTCGCCAAAATTAAATATTTCACCCATT
CGTCAATTTTTTTTTTGCATTTTGCCAAAATATCCCTGAAAATCATCAAA
ATTGCTGAAAATAAGGCAAAATAGAACAGATTTAGCATGTCATTCACCAA
AATTAGTTCTCGCAAAAATTAAAAAGTTGGATCATTCGCCAAAATAAGTT
CATGCCAACATTAAAATGTTTAGGATTTTTGCTCCTTGCCAAAATTGGTT
CCCGCCAGAATAAGTTCCTTTAATATATACTGGTAATACTTTTCGTTTTC
AAAACTAATTTTTTTTCCAACACTCGTTTTATTTCTTTCATTTTCCTATA
CTGATAAATATTTCGACTACATCGTTTTAAATTTAATTTGGTGAAACCAA
ATTTTAAATTTTTTGTGGGGATTTTAATTTGGACAAAATTCGCCCAAAAT
TAATCCGCATAAAATAGAAATTTTTCCATTTTCTAATAATTTATAACTTG
CAAAAGCCAACTTTTTATCTAACCATTTCGACTATATCCAAGAAACTTCG
AAAGTCCTAACCATTATAAATTTCGAGCCCAACATTTGGAAACTGTTTAG
CATCTTCTAAGTTATTACCCATCCGATAAAAAAAACGACTTTTCAATTTT
CCAATTCAAGCCATTGTATTTGTTTGGCAACATCTTTCACCTAACAATTT
TTTACCATAGTCGATCCAATAGAATACGAAATGGAAGACACCTGACAGAA
CAATAATGACCAAAAACAAGATACCAGCTTTGGTTGGATTATCTTGCCAG
TTAATCGGTGAATAAATGACATCCTCAGAGGCGAATGAGTAAATAACATG
AAAAATGAAGTAAAGGATGAAGAAAATCATCGGATAAACGAAATGTAAGA
CTCTGTATGGAATACGGTGTAATGAGAAATCGATCAAAACCATCGCCAGA
ATGATACCATGTCGATCGATGTTAAAGAAATCAAGATCCTGGCTACCATC
AAAAAGCACAATCCAATACGAAGCAACTACCAACGTACAAACTGCAATAC
TGATATTGAAAAATAACCAAATAATCTTATCGTAACAGCTCAACCGATTT
CCCAGGTCTTCCGATTCGGTTGATAGATCGGGGGAGCCAGATTCCAGCAT
ATCAGTTGTAGACGCATATTGATTTGGATTCATTGAAGACATTGGCACGT
CGGGGTCGCAACCTTGGCGCTTTTTGGAGTAATAAGAAATTGTGCCGATT
GTGACGAGTATAAAGTAAAATACACACGTCAGATAATTCCACGATGTGAA
GAATACAAACCAACAGCCACCGTTACTCTTTGTTTCAAAGAAATCAACCA
TATCAGCTAGCATGGATGCAGTGGTGTATAAGGCGATGATAACTCGAATT
ACCAATAGTGCAATTTGAGGGATGCACTAAAGTAAAAAGAGATGAATATA
TTTCATTTGGAATGATATTTTGATTTGTAATCAGAGCAAAGGCAATTAAT
ATGGCCCTTTTCCAAAAATGCTAATTAA
Gene-mRNA-Prot
The following transcript feature(s) are a part of this gene:
Feature NameUnique NameSpeciesType
TCONS_00068912TCONS_00068912Clytia hemisphaericatranscript
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_49supercontigscaffold_49:911906..924883 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
139.9	142.56	154.58	173.73	93.17	76.61	142.53	155.06	165.23	148.88	140.62	173.73	109.19	122.03	101.54	97.01	174.43	166.61	90.86	83.63	182.72	170.94	118.2	115.42	141.77	131.51	140.06	125.56	96.08	87.95