XLOC_042897 (gene) - C. hemisphaerica

Overview
NameXLOC_042897
Unique NameXLOC_042897
Typegene
OrganismClytia hemisphaerica (Jellyfish)

Sequence
The following sequences are available for this feature:

gene from alignment at scaffold_49:494528..500575+

Legend: gene
Hold the cursor over a type above to highlight its positions in the sequence below.
>XLOC_042897 ID=XLOC_042897|Name=XLOC_042897|organism=Clytia hemisphaerica|type=gene|length=6048bp|location=Sequence derived from alignment at scaffold_49:494528..500575+ (Clytia hemisphaerica)
ATGGTTCATTAATTTTGAACAATGGACACCTGTTAACTTTCTGTATAATG
TTAATAGGAAAAAACTCAAAAGATTAAATTAAATACAATTAGTGATTTTT
TTAGCGTcggaaaaaaagaatttactatcaaattttagtatttttttttt
aatttaggattttttattagtcgcatttgaaatattttggtaagtttcac
tttttttgaattctatatAAAGTATCCAAATAAGcattataaaaataata
atcaaaAGATGGATTTGTGGGTTCTAGTGCATAATTAACATTATTTGGTT
GCTTTTTGGACTTGAAATTTTAATGGCGtttgagttttaaagctatcGTT
ATGCGGAATCATGTTAGGCAAAAGATcgagttttaaatttttatttttta
gcaaaTATGTGGCGACTAACCATTTTATTGGTGGCTCTATGCATCTTCAC
TGCAAGCATCGAAAGCAGAGCTTTGAAAGGTATGTTACATTTTGAGCTTC
ATTATCATTACAaaattacacccccttctctcTGGCCCACTGAGACCCCT
TTCCAccggaaaaattggccaaaatatcgtccccggtggaaaatgaTCCT
CCAATCTTTGTCCccaatgaaaataatcaaataaactaaccctcactgca
aaatattatgttatttcaccaccactgaattttctgacttaaaaacaaaa
gaattgaaactcCCAGCCATAGAAACATGGGAacatcaatccccattgag
tttgaGTTCGTTTCTATCCTACCGGGTCTATGATAAGGGGGTGTGAAATT
GTTCAACAATCCATGAAAAGATTAATAGATACCCTGTCCGAAACGAAATA
AATGGATCCGGTTCGTTTGGACCAAATGTCCGAAATGAAATAAGTGGGAG
GACTGTATGTTTCTTTTAGatgtttcttcttctctatcTAGTTTCGTACT
AATCATAATTTACAAATGCCGCGCTATTTATATATCCACGTGACCCTACT
GGTCACGTGGTCAAACTGTCAATCATAATTTCTATTCCACGACATACCCT
GTCTCGACAAAAAGCGTTGcaagttttgtattttattttgagTTTCAAAT
ATTGCTTTCCTGTCTGGTCTTACCGATACTCAATCAATCATGGTTATTAT
GAAATCTAGGAATTGAAATCTCAAGAAGTATTGCTCTTGAACGAAAAAAT
ATAACTATAAAAGTATTATCTCGGTGGATAAATAATTCTGAGTGGATGAA
TTCAAGACATACAGTAGGAATTTAAAAGCAATGTATCAAAATGTACAGAC
TGTCCGATTTTCGGAGCTAAACTTTACTTTGTCTATTCCATGAGAAAACT
GAACAATAGTGGTAACTTTTTCCGTCGAGTTTTATTTCTATACTACCATT
TTTTTCGTAAAGGggattgagtttgaagcccgaagggctagaaaaGAATC
TCTAccctaacctttcccaggcaagaaaaggtgaagccacttattacttc
ccatccagaacgcacATAGAACGCGCCGAAATGATGGTGACGAATTGTAT
CTGTCGAcgaattgtattttttgaaatctagcgatagattttactttcaa
tctggtgtttgtgtaaaaaccacgcgcaggCGTTCTGGaagggaaataag
tggcttcatttcccatctaggagtctcgagtctagcccttcgaggcttgg
aagtcaatggggAATACCTTTAAAATGCTCAAGGATAAACGTGACCCCTC
TAATTCTTTACTTATCAATTGATTTGATCTACTCTTTCAACGAATTGTAT
CTTCTTTCAGCCTCACATTCGAAATCACACCAACACGCTTCACATNTTTG
ATTTGATTTACTCTTTCAACGAATTGTATCTTCTTTCAGCCTCACATTCG
AAATCACACCAACACGCTTCACATGTCACCAAATCTGAGAAAGCAGACAA
AGGGCCTGGAAAGAAAGgtataaatttgttttttattgcaataaatcaag
ttttgtttgtAATGGAAATCGCCTGGATTTTCGTCTTACGTCTTACCTTT
TGATGTCTTCAATTTAAATTACATGCTTAAGTGAAGGGCAACTTTAATCA
CTTCCAGTTCAAATCTCAACATGATTTGTTTACCTTTTAATCCAACTTAA
TTTACAAACTCCGGACCAGAAAGCCTACTGTGTTTTATTTACCCGGGAGA
AGGTTCGGgtacttgccaagtgaaccgtacCGAGTGGGAATTGAACCAGG
GTTGCCCGTGCAGCAACTAAAGGTAATAACCACTATACCAAAACGTCATT
AATAAACTTCCTAATGCTTCATAAAAATAGAATACccttttttgaccatt
ttagcGGAAGTGCACGCAGCCAAAGTGAGCGAAGAAGATGATGATGAGGA
TGGACCAGCTGAAGAAGCTGATGAAGATGCCAGTATCAATGAAGATAATG
GATCTGCTGCTTCTGCCAGATCTCCAGTTATCCTCCCTCCTCCAATGCCT
TCAAACAACCAAGGTAGATATTATATAAAGAGTATAGATAAGAGTTAAAG
AGCTCGATTTAACCTCTTGATGAAGGATGCATGAAGTGTAGTAAAGTAAA
CTTCAATCGATATTGTTCAATAGAATCGAAGAGTAATCCATTCCTGTATT
TCAGTCTTTGCGAATCTCCTACAACCACTTAATTTTAGAGCTTCAACATG
ATAAGACTTTCTTAGATTTTTCTAACTATGTAAGCCAAAAAGATTACAAG
GTTGAAAATTAGTTGAAAATGATAGTATGAAAGGAAGTTTATgagaacac
ccctgtgtcacagtcccggtgggatttttttcCCACAATGGGGGTAAAGA
TTTATCGACGTCCCAATggggattgaaattctattgttgcaagcttaaaa
tatccagtggggatggttttggagtgcaatttatgacattgaatttcgaa
tgggaatgaaattaaagtcaatttcccagtggggctgaaattataGAGTA
TATTTCTTAAACAGTGAGTTGGGgccccaccgggtctgtgacacaggggt
gtatgagAACTTCTTAGCTTACCATATTAATACAAGACAAAATTTGCTCA
TAAAGATGGAGCCATTAATCGAGCTAAAGTTACGAGGAATCAGAAAAACA
ACTTTAGCTTCAGAAGTATAGATTATTAAGAGTTTCCTTTCTACTTTTTA
TCCACTTAGGTCTTGATATAAGTAAAAACCCCGAAGCCATTGCAGCAGCA
AGTAATTTACGCCAAGCCATTCATGATAGTCTGGGTGAGCAACACATACA
CATCACATACACATTTCTTAAAATGATTTAACTAAAACAAACGGCCATTC
AATGTACATAACGTTTATAAATGTACGTAAAAATGAATGTTCATACATAT
ACTACACTTTGGAACAAAAACTGGCCATCGGACTTTaaattctttcaaaa
ctttCCATTTTTGAACTCgattattgaaaaacaaaacagacgAAAAATGA
CATTccatttttctttgattttgtagGCAAATTAGCCAGAGCTGAAATAG
ACATGCACAAAGCAATCGTTAACCCAAACAAAAAACAAGATGGTATGTGT
TGCTCACTGTATACATTGGTACCTTATTAACATTACTAAGATCCACTGGG
ATTAATATTGATCTAAAACTAGGTGACAGATGTTTggtcaatttcttttt
ctcttgGTAGATGTCTTATCCCTGTTTTTCAAGATAATAGAATTGTTTTA
TAAAGCTTTACTATACCAATTTATTTGTCTCGTTTAATTTTTAGTCCGAC
CACCACCACAACGTGCTTTGAAATGTCCACAACCATGTCCACAAGATTGT
GCCCAATCTGGATGTTCACCAAGCTGTTGTATGTCTGGTATGCCAATGCC
ACAACAACCCATGATGATGCCTATGCCAATGATGATGCCTGGAATGATGC
CTTCGTGCCAACCAGGATGTATGCCACAAGGATGTGCCCCACCAGGATGT
ATGCCACCTCCACCATGCTCACCACCAGGTTGTCAACCACCAGCCAGCTG
TAATCCTGGATGCGTCCCACAACAGCAAGCTATGATGCCTATGCAAATGG
CTCAACAAGCTTCTTGTCAACCAGGATGTATGCCACAAGGATGTGCTCCA
CCAAGCTGTATGCCACAAGCCTGTATGCCACCAAGTTGCATGCCACCACC
AAGCTGTAACCCTGGATGTGTCCAACAACCAGCAATGCAATTCAAAGTCC
AAGTTTTACCTCCACAAATCTTCCAATTGCCAGCTGCACAAGCTTGTCCA
CAACAATGCCAACCTGGATCTTGCCAAGTTGGCTGTCCAACATCTTGCTG
TCCACAACCAGGAATGATGCAACCTCCACAAATGATGATGATGCCTCCAC
AAATGCCGGCTGGATGTAACCCAGCTTGCCAACAAAGCTGTGCACCATCA
TGCCCACGTCAATGCTGTCCACAAACTCCACCAATGATGGCTCCACCACC
AATGCCAGCAGGTTGCGCACCATCCTGTGCACAACAATGCAGTGCACAAT
GTCAACAGCAATCATGCTGTGGTGCTGGTATGCAACAACCAATGATGATG
CCTGCTCCAATGATGATGCCAGCTCCAATGCCAATGCAAATGCAATCTGG
ATGTCCATCTCTTTGCCAACAACAATGTGCTCCACAATGTCCAAGAATGT
GCTGTGGGCCAGGACCAGCTGGAAAATAGATCTTCACCAATAGTTATTCT
AATGAGATGACTTAGTAGATAAATCTCTACTTGGTAAAATACGATCATGG
ACTGTCAATGAATAACATCTTTGTAAAGACGATTTGataggattttttat
ttcagactCTCCAAATTCTTCCGAATCTGTTAGATTGAAAAACACTTTTG
TAGATTCTTAAAACTGAAGTTTTCAAATTCACCAGTAGATTTTGCCATAA
TACTGTCGTGTTGATCTGTTAATTTGTCACGTGTCTTTCTTTTTGACAAA
ACAAAAAGTAGGTAGTAGGCTTTCCAAATGAATTATTATagttatttttt
tgtatatttaataaaaactatatattagttctatttatactgagacgatt
aatttgtatgcgacgagcaatttagaaaatgagcattatggaggagtgta
ctttccattcaggtttcaataaataggatctcctccacagatcacatttt
acaaacttctcgtctcagacgatttttccgtctcagtataaatggaacta
ttatttatttttttgtgaaagaattaaaatatatctaaacaactttttaa
aagtttctacTAACACGCACgtttcacagacccggtaaaGCTTCCACCCA
AATGATTTTCCCCGTTGAAAAATGATCcaaaatttcaaccccactgagAA
ATTACCTTATCATTTGTATCCCAATGGGAAATTGaatggaaatgaaaatg
aaaattgcaCCCCAAAACCATTTCCATGGACTCTTCCACGATCGGTgacg
aaatacttggcacaaaaaggaaatccaccggggtgttttgaaaccacaat
cgatttgcaagtgcttTATAGTATGTTggaagtgtagagttttaacgcta
gacttaggaggaccttaggatctgaagatccaaaagttcaaaaggccccc
tcaaaaatggtccagtcgggcttgaaatatagcctagaaatcaataaatc
cctcccatcaaaataatcgttgaaatcaagttgaaggcctgaaattgaca
ttctcgctcgaacttcaattttcgaaaaatggtaaatcagccaaaagtgc
caatatgttattgCACCGATTGCAgatggaaacaatagattttctatccc
caccCATTGGGATTTGGATTGCAATTTTCATTCCCACTGAGGGCGAAAct
ccaccgggtcactgagagaCAGGGGTATCTTCTAGAAGTAGAATAGGAAA
CTAGTGAACTTTATAAAAAACTTCAGGAGAAAAATAACATACGGATGAAA
GGTTTATTAGTCTGGAAATCTACACAGACCACTGTCTCACTAATCGTC
Gene-mRNA-Prot
The following transcript feature(s) are a part of this gene:
Feature NameUnique NameSpeciesType
TCONS_00068792TCONS_00068792Clytia hemisphaericatranscript
TCONS_00068793TCONS_00068793Clytia hemisphaericatranscript
TCONS_00068794TCONS_00068794Clytia hemisphaericatranscript
The following polypeptide feature(s) derives from this gene:
Feature NameUnique NameSpeciesType
TCONS_00068794-proteinTCONS_00068794-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_49supercontigscaffold_49:494528..500575 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.87	1.03	0.52	0.64	7.77	9.3	120.87	127.22	56.58	54.44	150.78	93.78	155.06	134.54	89.02	300.24	215.94	200.13	0.49	0.51	107.92	120.4	80.39	84.2	120.89	134.76	18.76	5.05	0.69	0.61