XLOC_042604 (gene) - C. hemisphaerica

Overview
NameXLOC_042604
Unique NameXLOC_042604
Typegene
OrganismClytia hemisphaerica (Jellyfish)

Sequence
The following sequences are available for this feature:

gene from alignment at scaffold_482:210956..220878+

Legend: gene
Hold the cursor over a type above to highlight its positions in the sequence below.
>XLOC_042604 ID=XLOC_042604|Name=XLOC_042604|organism=Clytia hemisphaerica|type=gene|length=9923bp|location=Sequence derived from alignment at scaffold_482:210956..220878+ (Clytia hemisphaerica)
TAAACAAATACAAAACAGATAAAACTACAAGTCGAAACTTAAAGAATGCC
AACAATACTATTGTGTCATATGTtgacaaatatcaaaataaaacatgtcT
GTACAAATTTACGTATGAAACACAAGCGAAATCAGATgactgtaaaaaaa
aacaagatattTTTATAGTTATTGAGATCATATTTATGTCATCATCAGTA
TTGCGGTAGTTCAGTGTTGTTGTTATTTAACGAGAGCAGCTTCGATACAA
AATTTTACAGAGGGAAACATTTTTTCTGATCTCTATGGACGCTGACAAAA
AAGCACCACCAcctaaagaaatttttgagaatGGTGGAGAAGAAGGTATT
TTACGGACCAGTTTTTTGATACACTTTATTCACTTAAAATTCCAGATTAT
TGCTTATAGTTAGTTTATACAAATTGTCCCTGTCACCAGATACATCTTGA
TGTTTAAGCGTTTTAGGAATCTCTGCAACAGAAATTCTTATGTGATGtca
tgttgttgtttttcttctttcttctactTTCGTTCTGTAAGTAAACTATA
TTCCTTCTTAGATTTCAAATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNGGGGgggggtaaaacctattgtccggggggccaaaa
gtcaccctgtccggggggtaaatcactaaaaattgttatatcctccaccc
cccccccatgtaaaatttttttctggaagagcccaatttatatttttctg
aaaaaactgAAGACACGACTAGCTAGCATCACAAATAAAGCACCTTATAT
AACTCTCCTTAAAGTCTCTCCTTTAAAAACTTAGTTACATTTTCACAATT
TCTTACATTTTAGTGTTCGATGATCCGGATGGtattttgaagaagaagaa
gaagaacaagAATAAAGTAGCTCCTTCTTCACAAACTGTAAGATCGTCTG
CCACAATCAACATTATACGAACTCTCAAGGTTCGTCTGTCTCTGTCTTGT
GGTCCGTACGATGATCGCAATAAACCAGGGGTTTCGGATTCAGACCTCTG
CTCCTGTGTTCTCTTCAagaatgctttttttataagaacaacaacaagcc
ttttaaggcaaaaaatgttttaacctcttcttattttcactattttgtgg
gtatttttatATGCAATTTCCttagaaatcaggtgttttacaGTCAGCTA
ATCCTTAAATTAATATTTTAGCAATCGAAGCCTtagttcttatataattt
gttcttataacagAAAACGTGTATACACGTAAACAATCACCCTTTTTGCC
ATATACTAAAcattatctttaaaaaattttccaaatttgaccatctttta
taataaattttatCTATACTCTAAGAGTCGTTTTTAAGTCACATCCAATG
CAAAAAGGGCTCAACATTTACATTTTTAATCTAGATAAAAAAGGAGCAGA
AAAATGTCCTGGTTATTATTGACGTCAGCAGCATTGTTTACTTTAGCTTC
AAATTCACAAAAACTCAGAGATCAGTCTATTTTGAAATTGTGATTGATCT
GGAAAATACTTTATAAAGTCATCACTTATTAGGCGAATAAACAAAATACA
CATGATTGTCACTGTGTACTtgaattgacttgaaatttcttGTCCGGAGA
AGTAATATGCAAATCATCTGTTTTTAcctttaaagttttaaaaattttgc
ctgGATGAGTGAAATGCAAAATTAATGTATTTTTTTGCAGGTATTCAATA
ACCATATTATCTTTTATTAAAGATTGACTTTGTGATTATCAAACTGCCCC
AAAAGTTTAATTCATAAAAGCCTTTGCTTTTATAGCGTCTAGCCAAGGAA
GTTAATGTATTTCTTTTTATCTCTTTATGAACAGGATGTTGTGACAAGTG
AAGATGAAAAGGGAATGGCAATGAAGGTAATTTTACCATCTTCTTCTGCT
TTGTGCATCTAAACATTTTCATCcaagaaaaaagaagattttgttttcat
tgaaagtttttcttaatCTAGGATTGGTTTCTTACTTACTTTCTCACTta
tacactcccttctcacagaaccgATGGGATTTTTCATGACACTGGGAAAA
ATCTCTATAGAGATCGATACTATAAATTCTTTCATGATTTTgcatttgaa
ttccattgttttcaagtcagaaatacgtatggaaaaaatagcacaatatt
ttgcagtgaggatttatttgtttatttgattgttttcagcAAGGACAAAA
ATATTATGgtaaatttttccagtgggaagaggTTCCACTGGGAcagtgag
aaaggggtgtcttatatacccctgtctcacagctggTGGAAATCCTTCCA
ACATTGGGGATGGAAATACACTTCTTTTCGTTGGATTTCAAATGGGGGAT
GAAGACAAAGTTGATTTGTCAGTGAGGCTGAAGTCTTGGGCTATTTTCTC
caacggggacgaaattttggtcaaatttttctGTGACTGGTTTTCATATC
TGATGACTTTATTTCTAGAGAGTATTGGAACTAGAGAAAGAACTTCTGGA
CATGCGCAGTTCGAAGaatgaaagtgaagaagaagtGAAAGGGTTGAAAT
ATGAATTGGGTGGTcttcaaaagaatttcaaagagTTGAAAGATTCATCA
GCAGCATCTCTGGAAGAACTGGAAAAAGTAGGTTTGTCTTTGAATTTGAA
TTCTACAATTTGGTATGACTGGACCTCTAAGAATTCCTTCCCCTCATGCC
AGTGAACTCGAACTTCACGCATTTAcgcaattttttcaaattcgctTTCA
CGCTAATTTATCTCGAGTTTCATACAAGctcgattttcaaaatatctgga
aatattttgggaaaaatcTGCAAATTCGCGAATGATGggtagaaaaaagg
gaaaattcacgtatttgTGCAAAAATAGTACAGATTCGctcattcacgca
aaccgctgccCCTCTCATATTTTTTAAGTTCTGATGACAACACGAGGCTT
TTAATGGAACTCTCAAATTTTCTGGTGATTGTACTCATTGTTATAATTAC
CTCTTTTTATTTACAGTTCGAAGTCACACGACTTTCAGATGAAAACGAGG
ctctaaagaaagaaaatactgACCTGATGAAACAAGTGGAGAACTCCATG
ACGCAACAAATTGCAGACCAGAAAGAATGCGAACTCTTGAAAACTGATCT
AAAAAACAAAACTGAAGAAATGAAAGTGTTGAAATTACAagttgatgaaa
tgaaaagtcAACTTCTCAATTCTATATCCAGTAATAATGAGTCGCTTCAG
GTGAGTATTTGACTACAGTGTATccagaaaaaaacaacttttagaGTGCC
TGATTTTAAAAACTGTTGTATGccttcattttatgttttttgtatTAAAA
CTGCAAATCACACTGCCTTTAAACTAACACTGAAACTTCTTAACCAATTA
AGTGCCACTCTGGAAAAGACTAGTATCTAATAAAAAGGTATTCGATGAAT
CAAGAGCAGGAAAGATTCTATACAATAgcacattttttctttataaacaa
ccAAGTCCCGAGTCTTCATATTAGCTGAACTTGTTTTACTCTCTCGCAAA
GTAAAAGCTTACCGTGACAGACAATAGCCCTTGACCCAAAATATATAATA
TCAGGGGAGGTGTCAAAGCAATTTCAAAATTAGCTAAAATACTAAGCAGC
CCAGCGCTGATCTAAAGAtagaatttgttttaaaaaaatgtgtaccttAG
TCCAAAGAGAATTCCTATGTAAATCCTCAGATACAAATTCCGCTTCGAAA
CTAGGTCATTGAGGAAGCGAAgaaagaaataaagcaaatgaCTGAGAGCA
TGAAACAGAAAGAAGAAACGCTCAAACAACAAATTACTCAACTTGAAAAT
GATTACAAAGCAAAAGAAGACAAAATTAACAACGAAAAAGATTCCCTTCT
AAAAGAGGTAGTGGTTGTTTTTATCGTTGCTGCTGTTCTAgcatggaaat
ttttcaaacattgatTAACGAAATTAATACTGATTTTTttaagttattta
tttttttgtagatAGGTATGGGTTTTTGGATTGTAAGTAGTTTCGAGcac
attgaaatattttcacaaTTCAATCACTGAGCCAATTATTACGAAACCTA
TTAAGAAACTGAACCTATTCTGAGGTCTCTTCCAAAATCTCTTAAAAACG
TTTCTACCTTATGCATGAAACCTTTAGAAAGattactttttgactttttt
aacccTCAGAGGGACTTTAGAAGGTTATAATCAACCATCATTGTTCGCAA
ATACCCAGAGCCcgtttttgcctaagtaacACCCCCAGGGTTGGTCTCTT
CAGAAGACTCTTCAAATATTCTACTTTACCACAATTGAATGCACCCCATA
CAAATCATGCTTTGCCACTCGTTCTCCTGTTAATATTGTGCAGAATTCGG
GTACTGGGACAGGGTTGTatgctttgaaatattttttctaatccatttag
aaatcgaaagtgaaaaaattcttgTAGAACTGTGCTTGCATGGATGACTG
TTTTATTATTAAGTAATTTCCAATCTTAGAACACtattactttaaaaaaa
ttcataaaatatttctttcactCCAAACACATAACTTTAGTGACTATGAA
AGGTGATTTTTCAGATTACATTAAGACAAAAATTTACACGAAACACGCTT
AGCTAGATACCACNTTTCAGATTACATTAAGACAAAAATTTACATGAAAC
ACGCTTAGCTAGATACCACAATCCAATACATACACACGCACGCCCTCcta
actttcattttcttcattttcaccaCAGCTAAATGAAGAACgagagaaag
tgaaagtgaacaACAGTGAAATCAAAGTGTTGAAGAACGGAATCGAAAAA
CTGATCAAAGAGAAGACTGACGAAAAATCTTTCAGAATCAAAGTATGTTT
TCAAAGAGCTGACAACAAAGAACTGATAATTCTTGTCATTCGTGCCTTTT
AGttgactctcgcttattcgagcACGTTAGCGAAAAATTTTTAATCGAAT
TGCAGagggattcgaattatagaaagtattctaCAAAGCTTTCCCTTGGT
CGGGACAGCTATTCAGTTCGAATTATTGAAAGATTTGAATGATAGAAGAT
CGAATTGGTGAATGTTCATTTTGACTACAAAAAGCTACGTCCTTGACACG
TTAGGGTGTTGAACTCTTAAACAAGTCTTTTAATCTAATGGTTGGTGCAA
AACCAACTCTTCATAGCCATGACAACTAAAAGACATATCTCAGAACCATT
CTATTTTACTCTTTCTACAGATAGCAGAGCGTTTAAAAATGATTATTGAA
GAGAAAAATACTATGGAAGGTGCTTACAAACTCGACCTGCAACAAGTGTC
ACGCGATTTTGAAGACCTCAAAAAACACTTCGTTCACGTTACAAGGTGAC
TAGCAAGCGGtcttattatttaaaaattgtgTTCACATTCCTGGTCTCGC
GTTTGAAGTAAGGCAGGCAAAACTTAAGGGGGaaatttaaagaagatttt
tttttcactagTTTGCGGAAATGTGCGGTGGCCATGCCTCCTTCTCCTCC
CTCATCGACGGGACCCACGATTCCAACAAACTATAATAAGTGCAACTTAA
GCCCTTCTTCAAAGAGGCAGGACTAATTTTTCGTCACCTTCAATCTTCTC
AAATGTAAATGATTAAACAACAACTCAACATTCGAATGCTAACCCACGTA
TTTAGATTAAATTCTACTTCTGCATTTGAGCAACTGGAAATGTTCCGAAC
TCATTCAAAATCATTTCATTAATTACTTAGCGACAAAGcagaaatgtttc
aaaaattaagCGACGCTGTGTTCGAGAAATGCAAGAAACAACGCTGGGTA
CCTGACATTGAATCAGAAAATTGTACAAATTGTTGTGAAAAATTCTCTTT
CACTCTCAGGAGGGTATGTTTCTCAATTGGAAGTTAAGGTGacattatcg
aataatagaatatCGAAAAGAAATTTGACTTTGGCTTTTAACTTGATCAA
AAATGAAGCTTTGTCTAACATAACATCAAATGAGAGTGTCATATACATTA
TCTCCCAGTAGAAGGCTTAGATCTCGTCAATCTCCTTATAACCACTCTTT
TTACAACACATTGTTTGTAAAATTGtgtctaaaaattttttttccagcac
CACTGTCGAATGTGTGGTCACATCTTTTGTTTCAAATGTTCCGATCGATG
GTTGCTTACTCCACACAGTAGGTAAGTCGAGAAGTAATGTTTTATGACCC
TGTCCTCCAGTGGAGTCCCTGATCACACCATCATGCCAAAAAAGTTCTAA
TCCACAGGATAacgctgaaaatattctttttttccCGCCATCATTCTTAG
AGTCTCAATCCCATATCACGCTTTTTAAACTCATAAACTACGCCATCGCG
CCAAAAGAAATGCCCAAATCACATCGCTATGCAAACAACCGGGGTCTTCT
GCAATCTAAGTAAAAAAGTGTGAGTAAATAAAAGCTGTTCCTTTTCACCG
ATGGCTGTCCATTTGCTCTCTTTACTTTTTGTCGATTGATCCGCGCTACT
ACAAGGAGTATGATGCAAACTTaatcatttcatttttctttttctcttct
gtTTAGCAAGAGAGTTCGTGCTTGTGATGTCTGTGCGGACACGTACACAG
AACAACATTTGGATGCTGAACCAGGGCGTGATATAGATATGACTGACGCC
CCTCCACAACAAATGTATGTATTCTTCATTGCTTTGCTAGAAACAAGCTT
ATTATGCCTAGATATAATGACATAggaataatcagatggtttgatgAAAC
AAAATGATTTTGGTGTTAAGAAATTTCATATATTTCAAATTACATTACAG
TATCTTGAGTTACTGATGGGGAATTTATGAAGGTGAAATTTGTCTAAATT
CATAAAGGATTGCTTAAAAAATCTCTTAACCTTTCGCCTTTTGGCCTAAA
AACCAACTAACTTTCCCCTATCTATTGTGATTGTAGGTATAGAGAATTGA
GAGGTGAAGAAATCACAAAGTATGAAAAGGAGTACCAAGAGGACGAAGAT
GCAGAAGACGATGGTGGACCTGGTAATTCTTTTTTTCGATATTTCTACAC
CCCTAGCCACCAGGGGCGTTCAATCTAAGAGCCTAAACAGTGGGGATCAA
TCGAATTTCTTTTggcaaaactttggaaaatctgaaaatcttttgccttt
tctttccctttttGACATAGGAAGATATGAAAGTGTTTTGCCTTAAAATG
GACAAAGACTCTCAAGAAAAGAGACCTAAATTAAAAGGCCTAAATTTTTC
CGCCTTCCTCATGACAATGCCTGTGGCATCACCAAAGAGCCAAACTTCAC
CTCCTGACCAAAGATGTAATGTCATGCaagttttggtaattttcaCAAAT
CGAAAGTGATATTTATCGCATTGATCCAGACTCGATTGTAAAATTATATT
ATGCTCATGTTTTTTTCATGCTATAGGTGAAACTTCTCGTTTGCTGGAGA
AAGGAAAATGAGAATAGATCAAACAGAAACGAATTAGATCAGATCTACGT
AACCTTCCTTCATCATCGTCCTCCAAAAAGAAGCTGATTTCGTCATAACT
CTGTCCCatattacacccccttctcacagacccggtattcaaccagtggg
gataaaaataacagactgaaaATCGATGGGGGttgatattctcatatttt
tcatggctgggaatttcaattcttttcttttcaagtcAATAAAATTCAGC
AGGGATGGGAAAAAATAGTaagtattttgcagtgaggattggtttaattg
attattttcagcgaggACAAAGGCTGGAGGATGATTTTCCACTGCGGGGA
ccatattttggccaatttttccagtgggaaggatttccagtggggctgtg
agaaGGGATACATATAGGGATATTACACATAAAAATGCATACAATTTTAT
TCCACATATTATATTAAAACGAAAAATATATTCTGGTAACGTATACCATG
TTTTTAAcgaattaaaattttttgattgctGTAAATAAGAATTTCCAATT
TATTCTTAGAattcatttctttattttctatcagaatttatactttttat
aacacacattaatttctttaataaagAAACAAGCTAAGGCTAACGCAACA
TAAATTATATCATTCCTTTTTCCCAGCGGTGTGTAAGCGAGCGTGTTACC
CCAATGACAATGTCTATACTACTTTGAGACAACAAGTTTATAAataacaa
aaacattcaaacccaacaaaaatttataaaaatacaaaataaaaattatt
gttCATTTAACCTATATTTCTTGTCTCTTTCGTTGCCATTTTAGAAATAG
AACTTTAGTCATCAATTCCGACTACTCTTTCCAATTGTATAACCTTCAAG
TTGGAAAATCAATTTTGGGTTCTTTTGTCTAATGGAAGTCTTGATACTTC
TCCGCCatttaatttcaattctttATCCATATTCCAGAATACAACAGTTC
ATTTCATAGACTTGCTTCTTCTGAATTGTTCGAAGATCTGTCTTTTCTTT
CTCTTCCCATCCTCCCAGACTTCTTGGTGAGATTTCTGAGCAAACAGAAC
TTCAAATTCATCATCTCGACTACCAGTGGCTGTAGTGGTTACGATTGCTT
TATGGTGATCAAAACCATTGGTGAACTGGTAATCTCTGGAAGATTGATGG
CCACCAGAGACTGCTCCTCCATAACTTACCACAGCATTTGATCCAGGGTA
TGTATTATAGGATGACTGGTACATCGAATTCCCTGCATATGCACCGTTTC
GATGATTCTGGTTGTTCCCAAATTGCCAGGGTTCAATATTGACCACATCC
GAGGTTGTACCAACACACCTGTTAGCATACTGCTTTACCATCCGTTTCGC
TTCCTCCTTCTTCAACTCGATAAACTTAGACAACTCTTGAGACATTGTCC
AATGGATCTGTTCAGTATCGGTAGATATTGGATATACATGCCGTTTCTTC
AGAATAGGTTCTTCGAAGATGCATCGGTTCATATCATGCCAGAGTTGTTC
AAATTCGATTCCTGTTTTACATCTTACCATTCGCATCATGAGGTTTTGGA
ACTCTTTGGCAGATCTGATATGTTTGTGTTTTCTCTCAGCTGGTTGTAAC
ACAGCGTACAGACAAACTAGGAATGTTAGCGTTGCCACTAACCCAGCAAT
GATGAATATAGTCACCGTTTGTAGTAATGCCAACAGAGTTGCAACAGCTC
CAAAGATTGCCATAGCTGACAGAaggattttattgattttgttcCAGTAG
CGTGATGCCCACATATGACTTTTGTATTTGGCTTCGGTCTTCTGGATGAA
GGTTTTCCATTTCTTGGTCATCTCCTTGAGGACTTCTTGGCCAATCTTCT
TGAGCTCAATATCTTTATCCGTC
Gene-mRNA-Prot
The following transcript feature(s) are a part of this gene:
Feature NameUnique NameSpeciesType
TCONS_00068255TCONS_00068255Clytia hemisphaericatranscript
TCONS_00068256TCONS_00068256Clytia hemisphaericatranscript
TCONS_00068257TCONS_00068257Clytia hemisphaericatranscript
TCONS_00068258TCONS_00068258Clytia hemisphaericatranscript
The following polypeptide feature(s) derives from this gene:
Feature NameUnique NameSpeciesType
TCONS_00068255-proteinTCONS_00068255-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_482supercontigscaffold_482:210956..220878 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
8.55	8.94	10.7	10.38	2.06	1.74	0.58	0.95	3.38	4.69	24.46	5.03	25.96	25.57	69.34	84.35	11.42	16.44	50.66	50.84	7.23	7.51	8.42	8.31	16.63	15.5	3.22	4.01	42.28	41.74