XLOC_042131 (gene) - C. hemisphaerica

Overview
NameXLOC_042131
Unique NameXLOC_042131
Typegene
OrganismClytia hemisphaerica (Jellyfish)

Sequence
The following sequences are available for this feature:

gene from alignment at scaffold_47:381638..391456+

Legend: gene
Hold the cursor over a type above to highlight its positions in the sequence below.
>XLOC_042131 ID=XLOC_042131|Name=XLOC_042131|organism=Clytia hemisphaerica|type=gene|length=9819bp|location=Sequence derived from alignment at scaffold_47:381638..391456+ (Clytia hemisphaerica)
GTGAGAAAAAGGTTCAAGAACTTTAATAAGTTAAAAATTTTACTATTTCt
ttcaaattcttattttagAATGTCTATCCTAAAGTGAACTCACAACTTTA
TCGTTTTTGCTGCACTTCTTTTACAAACAATTAAATGCTATACCTCAAAG
TACCATTTCAAATTCGGCCATGCTTGAGGCCGGACGNCCCATGCCGGACG
TcgataatatttttattttttaattattgttTGGAGAATTTTTGCTATCA
ACTGACCGAATCAAAGCATTGGATTTTGCGCCCTNCATGGCAGTGCCTTT
ACGGCCAATCACAATTTTAGCTTCTCAAATCTAAAATCAGCCTCTCAGAT
TTGGAATTCGGCTTCTCAGATTATAATTTCAACTTCTNTATGGAATCCGA
AAGATAAATCTCCAATCAAAATTATAAAGATGTCATTATGGAGATCAGTT
TTAACGAATTCTCTCTTTAGGTAAATACTATTATGCTTTAATTATTAAGT
TTTACAGTGTTTTACGATGAAGCTAGAAAATACTTGGGAGCAGAAATCCT
ATTGGTTGCAATCACAGTTAACTTACTGGTAGGTTGTAGGCGGGTCAACT
TACCAAGTCAGCTTGgcaaaatttgtgtgttttcatttcaaaaaatgacc
GACCGACCAGGCAATGTCATCCGAATCCTATCCTATAGtttgatttaaat
tttgattactTATCACAGTTTGATTAAGTTCAATCAGTGTTTTTGTAGCT
AAAATGGTTCCAGTTATTGCTAGCGCAACAGCTCTAGCCTAAACAATCCT
CAACAACTATTGGATTAGCAGAAAACAGTTTTTCATGCGCTCCGAAAATT
ATTTGTGAACGAAAAAACCGTAAATCAAACACAAACacgttttttacctc
ccaaacaattttatacacaacggtggagcgcacatttccccgggccattt
ctgagaaatttgaattacagGAAAGATgtgttactctcgggtacctaata
ggaataagcggggggttggaaaaaatctcaaaacttaataagcagggggg
gggggNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATATAAAATTTCAAcgtta
tatttgaaatatttttcaagttattcaagaaatactatatttttgagttc
actaaatgtcacactatttttgaacatGATCGCGTGCTCGTCTGCTACAA
ACATAACCATGCTGTTCCAAACTTAACCCCAGCTCTACTGGTAGAAACTA
AGCTAAAGTAAATCAAAAAATTAGTGTGTGATTGTTTAAAAAGTACTGCC
AATCGGGGTTACTTTCATAAGCCAGGGGTAACTCTCGTCACAAGTTACTA
ACTgcaaattccaaaaatcaaatataACCCACCACGGTACTGACCGTCAT
GATGTCTGGTACAAACTAAATGACCCCGCCCCTTGCCTGGCATTGTCGGC
TTTTTTAATGCAAAAGGTTACGTAATTTAGAAACAGCACGTCAgattttt
tcttcgattttaaAGTCATTAGACTGCAGTATAACTGTAACATACAGTTT
TTCTGGCATCTATATCAGtaatgtaaataaagcctggggtACATAGTTGT
TTTTTTGCAAAgatatttgataaattttaaatgGTTTGTTGGCTGGTTTA
AAAGAAAACAGTTTTtttagggtagatcgtcaactacaatttttagcatg
atgtggtttcaaatagggtcctgaaatcttttggtgttgaaagtattctg
aaaatactctgggagaatcaaaatggttttggtcaggaatttgcccaagt
ctgccatcatggtattgcatttcccactaaaacgcgatatttaaagttaa
agtctaattttcgcacgctaaaatctcaaaaatggtttcaaatggtgtcc
tgaaatcttttggtgttgaaagtattctgaaaatactctgggagaatcaa
aatggtttgggtcagaactGCACTTATGGTATTgtatttcccactaaaac
gcaatatttagagttaaagtctaattttctcatgctaaaatctcaaaaat
ggtttcaaatggtgtcctgaaaatcttttggtgttgaaagtgtTTTGGAA
Acactcaaggaaaatcacagtggttcacaatggtcatatataagtctgcc
attatgaattttatttctttaagaagaacactcaagcttactcaaaacat
tgtgttttagaatgaaatacaattccataatggcagactttggcaaaaat
cattttggttttcccagagtatttccagaatactttgaCACTATTTGAAA
ccaattttgagattttagcttgagaaaaccaagttttagcttgaaatatt
ggcatttagcatgaaaactcaatttctagggcgccatcatggatttatag
gaaatttttgaaaactctttgaaaaatttttcctggagctatctctgaag
tgtttcattgtagaaaatttcaagtgtgtaacttaaaaagtttaaaagtt
gtgggtcctcaaaaatgctgctttcatgcattttgctacccagaatcgga
gaaaatcagcctttttagcttgaaattgaaacattgaacgATCTCGCTGG
Ggctattttgtctttttgtgttgaatattagtacaagacaccatttagaa
acctttttgaccctttactggtctttcatagtcttaaaatgggcaaaaaa
taccatttttactcattttcgctttagtgcgaatcaaaCCCCCCCCtggg
gaatgctggatttttttacctaggaggttaaaaattgcacAAAATGTCTT
AAAATGTATTAAAtcttcacaaaaaaatactacattttgaattttttgac
tttgctaTTTGCCTATTTTTTCCCTTGTTTCAATACAATCCATTTTTAAG
TCTTTTTGGCAAACTGATTGTATACTACAggaatttgtaaattttaactC
ATCTAGGGCATCTTAGTAAGGTTATCATCCTCTCACACAGgcattaattt
ttggaattggAGATATTGGGAAACATAGAATTCTTTTATATGTGGAATTC
ATCTTGATGAATTATCAAATGGGGTCCAAGCAATTGCAATGCAAGGTTTT
AATAGTTGGAAATAATCAATGTGTTTTTCATGTATTATTCATATGCATAT
gtatttttgtagtttttcaaCATTAAAAGATTATCAAAAGTATATGATTT
CATTGTATATATGATAaatctaaattttatttttttatagcaCACAGTCA
AAGTGTTTATTGCAAGGGATGCGATGTGCAAGTTACTTTTCTGTTGCAAG
AGAACGCATTGGGAAATCAACTACAGAATTGAAGAAAGAGCAGCAAGTCA
TCGCTCCCACTCTTGTTGTATGTTTATTTAGTATTctgtcaaaattatca
aaatatgcTCAATATGATGCCAGTCATTGAAGAgcataaaatttttgctt
ttaagGATTTTGAAAATGTCAGCATGACTGATCATGAGCGTATCTCAGCC
ATCTTcaagattataaaaaagttCCTGAATAGAAATTTCTTCCTTCGAAA
ATTTAATTAGTGAGAATTTCTTTGTGGTGCACTGTTACAAcatagaggta
ataaaagttagatggagtaaaaacttttctgtaatagccagagaagtcat
aaaactctttagaaatttctttcaaatcggcctactttgattaccaatcc
ttggatagcaaaaatcagtcaagatatagattataagaactaaagtaaag
ttattctgTCCAACGAAACCTCGTATTTTTAGGTAAANNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNcatctatatttttattacctccatggttaCAAG
AATGATTACTTTAGAGTCATACAAGGGCTAGAGAAAAGGCCTGATTTGTc
tgtattttattttctgctaTTTGTTCTTGTAACACTAAAAAGAGTTAATT
TAACAATTTTATTCAAAGAGTTCTTGTTCAGAGTTCACTGTCCACGAAAT
ATAtataatgcttaaaaaagctCGATGCCCAAACTTTTAACTTTGCTTAT
AGGAAGTTCCTAATTGTAGAAGAGATGTCAGAATCAACCCCAAAAAGATG
CTTGCAGTCGCTAATCTGGTATGTATGTATTCCACTAATGTGCCAAAGAC
ATATCAATTCTTGCAGAAATCTCTACAGACTTCTTATTCTCAGTAATTAA
GAAAGTAATGCAAATGTCGCAACTAAGAAACGTACAGTCACTAAAAAGAT
GGCTAAAACACTGTGGCCAGCCCCCCAGATAGTGAGAGCAtgagaggtat
aaagaaacaggagaagtatgctattgtaaccatgctcgccctacgattaa
aaatattacgaggtatgcatgctcatgcTCATGCTCGAGGTATTTTGTTG
ATAGgtaaaatcttattggctaacttaagtgttggaaataagatgggacg
agattcattgtttctgacattggtgtaagaaaatatttggattgaaaaag
ggcctgtaaactttgcaatccttcatcaaatgacaagatttttcgatcaa
cattttcttcaaggtgaactctattgcttaatacttNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
Nttgaaattgtgtgtgcttataaagaacttttcattttctggcttgagaa
aatatcttttcaaaacaaaatttaatggatgacaaaattgaacNNAGCTA
CAATATTCTTTGTTTGTACAGACTTGTTACATTACAGGCAGGATTACGtc
acatggggaccagcaaaatggtcagAAATGTTCACACCACtcatttttgt
gatcttatggaTCTAATATGGATCATTttaaaaagttagtttgcttgtaA
CAAGTCTGTGTTTGCACACCATAATAGATGTTTTCAGAACATAGTGGCTC
TCTCTAAGATCTCTAAAACTTCCTAATATTTCATTGTTGTGATGACTTTG
TGATTCCCTGAAAGTCACAATGTGATCAGGGATGCGGAAATTtagatgtt
ttattttattttgactaGGTTTCACGGATGCCAATCGATGAGGCTATAGT
TCAATGCCAGTTTTCTCCAAAAGGAGCTGCTGTTGTGGTCAAAGAGGTTT
GTATAGGATTGATTGCTTTGACAGGTCAAGCTAACTTCTTCACTTTAact
tctttcttttattttttatctatatGGTTTCTTTCAAGTTTCTCTCCCCC
TAATATTAAGCCCCTTATCAATGCAGTTGGATTTAGAATTAATTTTAACC
CAACcacattttaacaattttttgctGCACAATCGTTGTATGCCAAGAAC
CTATATCCCAATGGAAGAACAGCTCTTTGTGGGGCGTtatgattttcatc
aattttaatccGAAGATTTAGAAAtgatttatttacaaaaatgctcaaga
actattgagacagactttacagTGAAGATATTTTTAAGAAAGTCTTTTCT
AAGAGTGCTATTCTTGTAGCTAATAAACTTTCTTTAACTAGTCGTGAATG
AAGAATATCTTTCAAACAGGTACTAGAAGAAGCTCAAAAGATGGCTGTTG
AGCAGTATGGCGTGGAAGACAAAAGTCATCTCTTCGTCGGTAAGACAATG
CTTTGTTTCTTATTTGTAGGTTGTCCAGAAGCGAAACATGGCACTTTTCT
TTTGAATCTCTCAATAAGTAAAGGAGTTggaaaaatagccaaaaataaCA
AGCTGTGGACCAGTTTATTAGGTATCTGAGAGAACATCGGTTAGTGGGTT
GTTTACTGTATGAAATTTTCTTGTAGACAGGAACTTTACGGACCAGGATT
CGAgaaaattttcttgtttttcagtgaaaaataaaaaaccatgTGATGTG
tagtcaaaattaaaaaaaaatatagcacatttttgttttgtgaaCAATAT
TCCGACTTGCGtgtctttttcaactttcttgtttttcaaatattctaGAC
CAATCACACGTTGGACGGGGTCAACATTTAAGACGAATCAAATTTCATGG
TCGAGGTCGCTTTGGAAGAATGAAGCGTTATTATTGTCATTATTTCTGCG
TTCTAAAAGAAGGAGTTCCACCAGGTAAAGACATCAAACGTGATAAAGGA
AGACATCTACCAGAACTCGAGCGAAAATTGAGATATCCAAAAACGATTAA
GAACTCACTAGCATGGTGGTAAAAGGTAGTATTTTGacctaaatattttg
aaatttgtataTATTTATTACAGCCTATTTTTATGTTTTAGAAAGAATCT
TGATAacttaaaaattcttttgatgattaTTGGTTCTTTAAGAATGACAG
TGGGAAATAATAGCAGACTTTCTTTGTTTACTGTGTTTAGCAAAGTTATT
ATTCAGTATGTTTTTTTAGTGCATTTGTAAAAGTTTACACAATTAAAATA
ATGGAAgcattcagcaaaaaaaaaacatttaaatttaGATATGAAAAATA
GTAGCAAGTTTTAAGCAGGGAATTAtacttaaaattcattttgcgTGTAT
AAAACTTGCCAAtagttccaaaaaaaatcaaatttagaaTAATTACAGTA
CTCGTTATATTGATAAATCAATTACGATGTCATCTTTGACGGTTACTTTG
ATATCGTTTTTCTTTCTACAGCTCTTTTTTCACCTTCTATGATTGGTGTA
TTCACTTAACATTTTCCTTCTTTCATGCTTAGTCAGGGTTGACGTTGGTC
ATGAACATATTAGATTACAAATTCAATGAAATAAAGACGTTGCATCAATG
GAAGGTAATTTGTGAAGCTTGGTATCTTCGACCAGGGAACTTGTTCGGAT
ATTGAATGGGTCGATGAGACATTTCGCCATCATCAAATTCATCTGCTGCT
GCCGTTGCTGGTGGTGATGTGTCGATTCTGTATTCTGATTGATGTTGTTG
ATGTTGATGTTGATGATGTGGATATCTTGGTGTCATTCCATCATCTTGGT
GGAGGACTGGTGTCAAGTTTCGTTCTTGTTGATGTTGGTTACTCTCCTCG
TCACGAACATTTTGAAGGTTAGTGCTGAACTTCAATTTCTCTGTATCATC
CTGATGACTTGGATAAAAATGACCTTGCGTTTTGGAACGCTTTCCTAAGC
CATCTCTGACTGGAATTCTGCTTGAATAAGAACGTTGACTTTGCATGGTA
CCGGGTCTGCTTTGCATTGTGCCTGGTCGACTTTTCATTGTACCTGGTCT
GTTCTGCATTGTCCCTGGTCGCTGTTGTGCTGTTCCCGCTCTACTTTGCA
TTGTAGCTGGTCGTTGACTGGTGCCAGGTCTGCTCCATTGACCACGTTTC
CCTGATGCCGTGCTCGGTGGACGCTTGTTGTCATTTGGTCTTGCAGGAGG
GAGGTTCTCTTTGTTTGGTTGTTGTGGAGGTGCACGGATCACTTCACCAA
ACACTCCACTGCGGTTAGTTGGGATCTCAAAATAATCATTCCTTCGACTC
ATAGCTGGTTGAGTGGCTCCACGTTTGAGACCAGATGGTTTTCTTGAGCT
TGATGCTTGGCTGCTACCAGTGGTGGGCCGCTTTCCTGCTGGCTTATTTA
CAAGGTTTGGTTGAGGTACTGACTTGACGATATTGAACATTCCAGTGGAG
TTACCACGACCAGTTCCTGGATCAGGATAAAACGACCCATTTGTAATGGT
GTCACGTTTTGTTAGTTTTGGCCTTCCACTGCGATCAGATAATAGGAGGG
AGTTTTGTCGACTACCAAGACTTCGACGTGTACTGTCACCTCCCAAttcc
ttttcattttctttgttttgttcgtTCGTTAGATGTTGAAGAAATTTCTT
CACTGTCACCAAATctaaa
Gene-mRNA-Prot
The following transcript feature(s) are a part of this gene:
Feature NameUnique NameSpeciesType
TCONS_00067453TCONS_00067453Clytia hemisphaericatranscript
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_47supercontigscaffold_47:381638..391456 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
25	22.96	13.19	11.98	9.86	8.88	12.06	13.49	16.83	13.69	12.56	15.49	19.53	19.61	16.04	15.6	29.55	28.43	14.64	15.01	29.33	28.65	38.62	37.53	20.32	24.17	16.86	11.5	21.85	22.43