XLOC_041200 (gene) - C. hemisphaerica

Overview
NameXLOC_041200
Unique NameXLOC_041200
Typegene
OrganismClytia hemisphaerica (Jellyfish)

Sequence
The following sequences are available for this feature:

gene from alignment at scaffold_444:107627..115801-

Legend: gene
Hold the cursor over a type above to highlight its positions in the sequence below.
>XLOC_041200 ID=XLOC_041200|Name=XLOC_041200|organism=Clytia hemisphaerica|type=gene|length=8175bp|location=Sequence derived from alignment at scaffold_444:107627..115801- (Clytia hemisphaerica)
GACCGGGGTTTCTTATACGGACTATGTTATCATAAAAAAGAAGAATTAAC
TTCTTTACAATTTTCATGATGTAATACACGGTACAGAGTACAATATTAGA
TTTTTCGTCATATTTTCCGAGCCTTTAGGCGACGTCGACCAGAAAGGACG
ACCACGACCGGCGACCACGACCAGCGACCAGATAAATCTGGGTTATCTAT
CGTCTCTCCTAATCATTTGAATATTATATCATATTGAAGAGTAAGCTCAC
CCCTATCTCATCTATTTAAAGCCACATGCCAAATACGTAAAACAACCATT
CCGAAGTTCTTGGAGTTTGATTATGGTGGCAATTTTTATCCTTTTGTATT
ATCGGTATCAAAATAATTAGTGGCACAAAATTTTTTGAAAATGGTTTGAG
AAGCTTTGTATTTCATCATCACCACCACCTTCGTATAAATAAAAGTTTGT
TAACTCAGATATTCCGGGCGTTACTTTCAACCTGTCACTGCTCTTACAGT
TTAATATTTTCACTTAATGGTGGAGGGCGCAAATAAGGACAAAAATACCA
GGGGCGCCAATTTCATAGTTTGCACCACCAAGAAAATTAAGCCAGACCGC
TACTGATCATCAGATTGTTATTTCTGTTGAAATTAGTCATTTTGTCAGCA
TAAAGACAATAGAATAATTGATTAGATTCATGTCTCTAAAACTGAACTGA
CAGCATTTAGTTCTATGAAATATCTAAGTAGGAATAGGTCATACTCTTAT
CATATCTCTTTCGATATTCGCCTTCGTTGTTTAAGGGCCATAGTGAATTT
TTCATAATTGCTGTGTTTAAAATGTGTTTTCTTACTGATGTAACCAACAA
AACTATGACATGCTATACATTTTCTGTTAGACAAACTATTCCTGAATCTG
AAAATTTAAAAATTGCATTGGAAAAATTTGATGAAGAAGAAAATGAAGAC
TTTTGCGAGGCAGAGTATTTCAACTTTGAAGAGCTTAAACATTTTGTGTA
TCTTTTACCGAATAATAAGGGAAAATTTTTGTAAATGCTTCTTTGTCACG
AAATCTTCAAAATAGTGGTTTTTCATCAATTCTTCATCTGGATTTTGCTT
AAAGAAGAAGTCATAACTTTTGACACATCTTTTTAGAAAGATTTTCCGCA
AAATTTATAATAGTTCAATTCTTTGCGGATAGTTCGAAAAAAGTTCGAAA
CAAAAAAGTTAATTATCCATTAAAATTTAGCACTCTTTATAAAAGAAGGT
GATACTGTACAACATATTATTAACGTCTTTTTCTAAAGTTCATAACGTCA
TTTTTGCAATTAAGTTCTTAATCACTCTCAACGGGTTTGATTAAAAAGCA
ATTTATAAAGGCAATTCTTTGTTAAAAGTGTTAAAGAATCTAAAACATAA
CTTTTATGCTCAGATACTAAAATCAAATTTCTGACTATGGTCAGAGCCCT
TAATTCCGCAGCTTTTATAGCTGTGAATGGAATGTCGTTAGTTCTAATTC
TGGTAACAGATATTGGTCTGTATGTATCTCACTTCATTTGTATGTTTGTT
GCCTTGTTAGTTTGCGCATAGTATAAAAAAGCCGCAGCTGGAATGATAAC
ATCTGAATTTCTGTGGTTTTATCTCTGTCGTATTTGATGACTATTTGTTG
ATCAAGAAATCAGTAATGTAGCATTTTTAATGGTAAGTTTTATTGGTTTG
TCATTAATACTTACTTCTCAGTGCGTTTTAGATATTAATGATATGCCCTT
GATAATACACTTGTATTATAAAATCATTGTAAAGGAAAAATCAACACTAA
GAAATTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNCGTCCTTTTGACCTCAAACCCCCCCCCCCCCCTGAAT
CCAGGGGGGAGGACACGATGACTAAAATTAATGAGGTGCCTCGAAATGCC
TTCACAATATTTCAGTGAAGTCTTTTTAGAAATCAATGAAAAAATACGTC
AAGATAATACTGCGAAAATTTCAATATAATTCTTATAATTTCAATTTTGA
GGAAAAACTATCGTTCCCATAAATACCCCTAAAATATGTCCGAAATTAGT
TCAATTGTTCTATTGGGTACAGACTTGAAGATATCTAGCACCAAAAAACT
TTTTGTAAAGGAAAATTAAGAGAAAATTTCAAAAACTATCTACCAATAAT
AAACTGAGCATCTTGATGCTCTTATAAAGCTCGGAGACAGAGATGGAACA
GCATCAATTAACTGACTGAAAAGACAATGCGGTACATATTCCAGCCGCGG
CTTTCTTATACCAATGGTTTGCGGTGGTCTATACAATTCCGCTCGTTTCA
GTATTTGCGTAGTTTTAATGGTCGATCGTTATGAGAAATTGGTCTTGGTC
TGTATGTATCTCATTTGTATGTTTGTTGCCTTGTTAGTTTGCGGTGGTTT
AGTCAAACCACTTTCTGATGGGATGGCCAGCTTGCTTTAAGCTCAAGCTG
ACAATATTGAAGAACATCTATCACCATCAATATAATTATTCCCAAGTCAA
TTGAGAATAATTTGTTTATTATGAACTAATGTTTTTAGTGTAGAAGCTGG
GTATAAAAGATCATCAGTAATCAAACAAAATTGTTCACTCACAACTTTGA
AGAAGCAAGCGAGAAGAGAACGTTGAACAGAATGGAAAAGGTTTGAACAA
GCTTAATTATATCTTACAAAAACTTAGATCAGAGACTAACACTGAACAGA
CACTTATATTGATCTACTTTTAAGTAATTCGTAACATTTAGAACTCGAGA
TTAGGAAGCATATTGTTTGTTGATTTAGAAGCAATGCTGTTTGTTGTTGT
ATAAAATGTTCTATTTAAAAACGATTTTTATTCAAACAGCGTTTGATTTC
GGTTTTATTTTCAGACGAGGTTGTTATTCCTTATCTTTGCGCTATGTATC
GTATCTACGTTATGCTCACGTGGCTGTCCAAGCACTTGGTTCTGCTGTCT
TGCCCGTCCGGAGACAATGAAAGGAACATGTTATGCAACAGGTTATGTAC
CAGGAGGAAATAAAGTCATCCTGGAACCGATTGAAGCTCCTCAAGCTGTA
TTGCAAGGTATACTACACACTTTATAAAAAAAATTTTGTTTTCCATTTCA
CAACGGATTTTTTTAAAACTACTTTCTATTCATAAAAAAATAATTCAATG
TCTCGAGGGATATTATCTCCATGGTAATTTTTTGAATACGAGGCAAGTGA
TTTTCGTGATGTAGATTTATNAATGTCTCGAGGGATATTATCACCATGGT
AATTTTTTGAATACGAGGCAAGTGATTTTCGTGATGTAGATTTATGGAAA
GGTCTATTTATAGATTGATCAAACTTTTGATAATTTTGAAGAGATTTTTT
ACATATTTTCTCAATTTTAGATCACTCGATTGGGATTGTGGCCAATAAGC
TTGGTTATGTACTTGACACAGGCGGCGCTATGGCTGATATCGTGGCATTA
ACCGAAAAATTCGAGCCGTGGGGAAAATTTTTGGCTGGTGGTCTTGGCGT
CTGGGGGTCGATAATCGGCGTGGTCGCCAATATTGGGACCCCAACTCCAG
ATGATATCATAGCCGCATGTAATGAAGCTTTAAGCGAGTTAACAGATGAA
GTCAATCAACAATTCGATAATATGCAAGCTTATGTTGACCAAGCCATCCT
TCAAGCAGATAAAGAGTTGATGAATCTTGATTATCGCCAATATCATAATT
ACTTTACAGATTGTGTCAATGAGGTACATTCATTAATATTCAAATTCAAC
ATAATGCATTTTTAGTTTTTTAGAAGATACAATCGAATAAGCACACTTTT
TATTTAGCATTTGGGCGTCTCAACACAGGGAACTTTTGCCTTTTACTTCT
CACTACGCCAATAAAATCTATAGCAAGAAGCTGCAAATTTTCTTATATAA
ACTCGAATCATCCCCGTTGGAAAGTTATTCAGAAGTGGAACATCTTCAAA
TATAAAACCGATGAAAAAGGAAGATGACGAGATTTAAAAAGAGTAAAAAA
TCAAGTTCTTGTAGAATAGAACTCTCATCGCCATTTTCATGTCATAAAAA
TTATAGAATGGCATTNTTTTTGTAGAATAGAACTCTCATCGCCATTTTCA
TGTCATAAGGATTTTAGAATGGCATCAATTTTGTGAAAAATATTGTTCAA
CTTCTTCAAAATCTTACTTTCAAGGTCACTGAAAAAGATATGTGGAGTTG
CGTGCAAGAAGCCGAACGCCTATCAGGGAGCGACCATGCCAAATTCTTAA
GATACGAAGAAAAAATGAACCAAGAAGGTTGGGTTGCCACACCGGATGAT
GTCAAACGAATGGAAGTCCTTTTCTTGACATTCAGAGATTATGCTCAATT
GAGGTATGCTGTTTAGAGAAACAACCTTCTTTAACTGTCTTAAAAGAAAT
CTTAACTTCCAACATTTTCTAGCAGAGCATTTTAAAACAAAAGAATGAAT
CAAAATTCTTTTTTACTGCGTGGGCAACGCGCTAACTCTTACTGTTAATT
TTGCTATGTATAAAATCCAGGTTGTTCATTTTTCTGACAAACAAAACTTC
ATAGACTAACGGTTTTTAGTATAAACTTATTCAGAACCCGAAAATTTTTG
TAGTGTTTTTTTATTTTTGACAACAACCTTCCTAGCATTTGTCGTATAAT
AAAAAGTGTGGTATCGTTGGAAAGATAGTCAATGCAATTTATTTTTCACT
TATTTATTTTTCAAATTTCGCTTAAGAAAGTGAAAAATGAAGAAGAAAAA
ATGACCTTGTTGCAGTAAAGTGCTTTAATTACCCATTTCCACAAGAATGA
AACTCTGATCTTAGATCGGCAAATTTTTTTATTATACGACAAATGCTTGA
AAATTTATGGTCAAAAATAGAAACACTGCACACGTTTTTGACATACTTTA
ACAACGGTGCAATTCATTGTATCTGCCAAATGACGTGCCTTACGCGCCCG
CGCGTCATCCTCTTTTTGACGCGCTTCACTCGCCTACGCACCTTACTCGC
CCACGCACCTTACTCGCCCATGCACCATACGCAGCTCACGCGCCAATGCG
ACTAAACATCGTACGCGCCCTCGCCCAAATTTCACTTGAATGCTTCGAAA
CACAGGTACACGTGCTTTCATTTTTCATTTTTATGTTTGGATGTGCCTGT
AAGCATGGCTATATTGAGATGAGCTGGATTCTGCAAATCTTTGAAACTTA
ATAAGAATTTCATTTCCCTCAATTATACAGAATGATGATCTATCTGACTT
TGACTGGGTATTATCAAAATCAAACGGNATTATACAGAATGATGATCTAT
CTGACTTTGACTGGGTATTACCAAAATCAAACGAACAACGAAGATGCAGC
AAAACTTGCCAAGAGATACCTTCAGGATCTACGTGATGATATCGCCTTAT
ACATCAAATACACTAATTTCGTTTACAAAACCATCAGTGATATGCACAAT
GTGCAGGATACATTCCTTCAAAATAATATCGGTTGTGATGATGTTCAAGA
AGTCCATGAAGGATGGAACGTTCATACTTGGGATAGATTATATTGTCGTT
ATTTGTTTTCACCAATGCTTATTAGTACAGAGACTTGTGATTACAATGGT
GAAGTTAGGTAAGCTATTTACAAGCTTACTTACACATACATGGCCACCAG
GGGGATGGCTCCCTCCCATTTTCTGCCAAGAAAGGCTATTTTGAAAACTT
TTTTTTTTATAAAATCTTTTCAAATCGACTCGAAATGGGTCCTCAAATGG
CACTTTAACCCCTCAAAATTCAACAATTTTCGAATTTACCCCGATATTTT
ACCCGTCACTTCACTCCGTCCTCACTTCACTCCGTAAGCTTTGGCCCTGA
CATGATGGTTTAACTTTCTTTTTCTCAGGGGAAACATCCCTGGTACATTT
TCCATGGATATCAGGTGTATCAAAGTTGTATATCAACGTGAATTCGTTGT
ATTGGTAATTTACAACATTTTAAGCTGCTTAGAACCCACCCCAAAGAAAG
AAAGATAATTATTACAACGTTTCAGATACATCAGCAAGAAGTAGTAAAAA
TGTTCTTTTCTTTGTTAGACTTTAATCATTCTTCTTTTTAAAGCAATTAA
AGGCAACGCGGTATAGAATGTTTTGGCTGCAAGCAACTAGGTCAGATCAC
CACATTCGCCAGATCATATCAGAACAGAGCAGAACTGATGGTAATATTAC
TTATTCTCTTTGATTCTCTATAGGGCCAAATCAGATTGCCCTTGTCCCCA
TAAGGAAGATGGACGTGATTACTGTGAGCTTTATTGGACTGTAGAAGGAA
AAAGTGACTCTTGGAATGTCATCAGAGAAGATGGTTATTGGTTCATCAAA
CCGAAGTTTGACAATTATACAAGTCAGATGAAGGAATCTGTATCAAACTA
CTGGAAACCACAAGTGATTGACAATTGTCTTCCAAACTGGCAAAAACTTT
ATGATCAAGTTGTTGTAAAGTTGCAGGATTATGAAAATGTTCGCGCGGTG
GAGAAGTCTGAAGTTTTATCAATGAAGAGCAAAGCAAAGCTTTATGAAGC
TAAAGAAAGACGAAGTAAAATTGGAGAGGAATGGGGCAAAGGACCGGCAC
CTAAGCTAGCTACGGAATCAACACCGTTTGTTGGGCGGGGAAGCAAACCA
GTCCATAATGAATTGTAATTTTCCTAGAAATATTTAAAATGATTGAATGT
ATCTTTTCTATCCTCGTTTTAACATCTACTCGTGTAACTTTTAAAGAAAA
AATACAGGAGTGAAAATTATCACCTTCTAGAGGACGTATTATATTTTTTT
GTTGTTTTATAGCCGTACCCGTAACCCTTGAAAATTTCTGGAGGGTGGAA
TAATTATGGAATGTAATTATGCGTATCGATCATTCATTCTTTCTCAAAGC
GATAATAGAGATTTTAAGTGATTAATGAGAATTGCGTTGTGAGAGTGGTA
ACAATTTACATTAGTTCTATTTATACTGAGACGGAAAAATCGCCTGAGAC
GAGAAGTTTTTAAAATTTGATCTGTGGAGGAGATCCTATTTATTGAAACA
TGAATGGAAAGTACACTCCTCCATATTACTCATTTTCTAAATTGCTCGTC
TCAGACAAATTAATCGTCTCAGTATAAATAGAATGGACCAGCTGCGCTGG
AAGGTCAGCCAACATAGCTAAGCTAGGATATAGCTTTAAAGTAATTTAAT
TTTTATCAATAGATGCACGGGAATAAAGATTAGATTAAAAGTGTTTTAAT
AGCGAGGTTGAGCATAAAATTAACG
Gene-mRNA-Prot
The following transcript feature(s) are a part of this gene:
Feature NameUnique NameSpeciesType
TCONS_00065765TCONS_00065765Clytia hemisphaericatranscript
TCONS_00065764TCONS_00065764Clytia hemisphaericatranscript
The following polypeptide feature(s) derives from this gene:
Feature NameUnique NameSpeciesType
TCONS_00065764-proteinTCONS_00065764-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_444supercontigscaffold_444:107627..115801 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
785.53	765.17	473.47	407.48	27.28	21.56	51.72	42.65	59.83	40.56	39.95	76.73	95.16	107.88	568.57	653.97	20.27	17.27	1471.1	784.18	2.1	1.16	483.68	410.23	0.38	0.4	26.61	26.95	219.43	269.99