TCONS_00065765 (transcript) - C. hemisphaerica

Overview
NameTCONS_00065765
Unique NameTCONS_00065765
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length986

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00065765 ID=TCONS_00065765|Name=TCONS_00065765|organism=Clytia hemisphaerica|type=transcript|length=986bp
CAGCTTGCTTTAAGCTCAAGCTGACAATATTGAAGAACATCTATCACCAT
CAATATAATTATTCCCAAGTCAATTGAGAATAATTTGTTTATTATGAACT
AATGTTTTTAGTGTAGAAGCTGGGTATAAAAGATCATCAGTAATCAAACA
AAATTGTTCACTCACAACTTTGAAGAAGCAAGCGAGAAGAGAACGTTGAA
CAGAATGGAAAAGACGAGGTTGTTATTCCTTATCTTTGCGCTATGTATCG
TATCTACGTTATGCTCACGTGGCTGTCCAAGCACTTGGTTCTGCTGTCTT
GCCCGTCCGGAGACAATGAAAGGAACATGTTATGCAACAGGTTATGTACC
AGGAGGAAATAAAGTCATCCTGGAACCGATTGAAGCTCCTCAAGCTGTAT
TGCAAGatcACTCGATTGGGATTGTGGCCAATAAGCTTGGTTATGTACTT
GACACAGGCGGCGCTATGGCTGATATCGTGGCATTAACCGAAAAATTCGA
GCCGTGGGGAAAATTTTTGGCTGGTGGTCTTGGCGTCTGGGGGTCGATAA
TCGGCGTGGTCGCCAATATTGGGACCCCAACTCCAGATGATATCATAGCC
GCATGTAATGAAGCTTTAAGCGAGTTAACAGATGAAGTCAATCAACAATT
CGATAATATGCAAGCTTATGTTGACCAAGCCATCCTTCAAGCAGATAAAG
AGTTGATGAATCTTGATTATCGCCAATATCATAATTACTTTACAGATTGT
GTCAATGAGGTCACTGAAAAAGATATGTGGAGTTGCGTGCAAGAAGCCGA
ACGCCTATCAGGGAGCGACCATGCCAAATTCTTAAGAtacgaagaaaaaa
tgaaccaaGAAGGTTGGGTTGCCACACCGGATGATGTCAAACGAATGGAA
GTCCTTTTCTTGACATTCAGAGATTATGCTCAATTGAGAATGATGATCTA
TCTGACTTTGACTGGGTATTATCAAAATCAAACGGN
Run BLAST on NCBI

transcript from alignment at scaffold_444:109624..112474-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00065765 ID=TCONS_00065765|Name=TCONS_00065765|organism=Clytia hemisphaerica|type=transcript|length=2851bp|location=Sequence derived from alignment at scaffold_444:109624..112474- (Clytia hemisphaerica)
CAGCTTGCTTTAAGCTCAAGCTGACAATATTGAAGAACATCTATCACCAT
CAATATAATTATTCCCAAGTCAATTGAGAATAATTTGTTTATTATGAACT
AATGTTTTTAGTGTAGAAGCTGGGTATAAAAGATCATCAGTAATCAAACA
AAATTGTTCACTCACAACTTTGAAGAAGCAAGCGAGAAGAGAACGTTGAA
CAGAATGGAAAAGGTTTGAACAAGCTTAATTATATCTTACAAAAACTTAG
ATCAGAGACTAACACTGAACAGACACTTATATTGATCTACTTTTAAGTAA
TTCGTAACATTTAGAACTCGAGATTAGGAAGCATATTGTTTGTTGATTTA
GAAGCAATGCTGTTTGTTGTTGTATAAAATGTTCTATTTAAAAACGATTT
TTATTCAAACAGCGTTTGATTTCGGTTTTATTTTCAGACGAGGTTGTTAT
TCCTTATCTTTGCGCTATGTATCGTATCTACGTTATGCTCACGTGGCTGT
CCAAGCACTTGGTTCTGCTGTCTTGCCCGTCCGGAGACAATGAAAGGAAC
ATGTTATGCAACAGGTTATGTACCAGGAGGAAATAAAGTCATCCTGGAAC
CGATTGAAGCTCCTCAAGCTGTATTGCAAGGTATACTACACACTTTATAA
AAAAAATTTTGTTTTCCATTTCACAACGGATTTTTTTAAAACTACTTTCT
ATTCATAAAAAAATAATTCAATGTCTCGAGGGATATTATCTCCATGGTAA
TTTTTTGAATACGAGGCAAGTGATTTTCGTGATGTAGATTTATNAATGTC
TCGAGGGATATTATCACCATGGTAATTTTTTGAATACGAGGCAAGTGATT
TTCGTGATGTAGATTTATGGAAAGGTCTATTTATAGATTGATCAAACTTT
TGATAATTTTGAAGAGATTTTTTACATATTTTCTCAATTTTAGATCACTC
GATTGGGATTGTGGCCAATAAGCTTGGTTATGTACTTGACACAGGCGGCG
CTATGGCTGATATCGTGGCATTAACCGAAAAATTCGAGCCGTGGGGAAAA
TTTTTGGCTGGTGGTCTTGGCGTCTGGGGGTCGATAATCGGCGTGGTCGC
CAATATTGGGACCCCAACTCCAGATGATATCATAGCCGCATGTAATGAAG
CTTTAAGCGAGTTAACAGATGAAGTCAATCAACAATTCGATAATATGCAA
GCTTATGTTGACCAAGCCATCCTTCAAGCAGATAAAGAGTTGATGAATCT
TGATTATCGCCAATATCATAATTACTTTACAGATTGTGTCAATGAGGTAC
ATTCATTAATATTCAAATTCAACATAATGCATTTTTAGTTTTTTAGAAGA
TACAATCGAATAAGCACACTTTTTATTTAGCATTTGGGCGTCTCAACACA
GGGAACTTTTGCCTTTTACTTCTCACTACGCCAATAAAATCTATAGCAAG
AAGCTGCAAATTTTCTTATATAAACTCGAATCATCCCCGTTGGAAAGTTA
TTCAGAAGTGGAACATCTTCAAATATAAAACCGATGAAAAAGGAAGATGA
CGAGATTTAAAAAGAGTAAAAAATCAAGTTCTTGTAGAATAGAACTCTCA
TCGCCATTTTCATGTCATAAAAATTATAGAATGGCATTNTTTTTGTAGAA
TAGAACTCTCATCGCCATTTTCATGTCATAAGGATTTTAGAATGGCATCA
ATTTTGTGAAAAATATTGTTCAACTTCTTCAAAATCTTACTTTCAAGGTC
ACTGAAAAAGATATGTGGAGTTGCGTGCAAGAAGCCGAACGCCTATCAGG
GAGCGACCATGCCAAATTCTTAAGATACGAAGAAAAAATGAACCAAGAAG
GTTGGGTTGCCACACCGGATGATGTCAAACGAATGGAAGTCCTTTTCTTG
ACATTCAGAGATTATGCTCAATTGAGGTATGCTGTTTAGAGAAACAACCT
TCTTTAACTGTCTTAAAAGAAATCTTAACTTCCAACATTTTCTAGCAGAG
CATTTTAAAACAAAAGAATGAATCAAAATTCTTTTTTACTGCGTGGGCAA
CGCGCTAACTCTTACTGTTAATTTTGCTATGTATAAAATCCAGGTTGTTC
ATTTTTCTGACAAACAAAACTTCATAGACTAACGGTTTTTAGTATAAACT
TATTCAGAACCCGAAAATTTTTGTAGTGTTTTTTTATTTTTGACAACAAC
CTTCCTAGCATTTGTCGTATAATAAAAAGTGTGGTATCGTTGGAAAGATA
GTCAATGCAATTTATTTTTCACTTATTTATTTTTCAAATTTCGCTTAAGA
AAGTGAAAAATGAAGAAGAAAAAATGACCTTGTTGCAGTAAAGTGCTTTA
ATTACCCATTTCCACAAGAATGAAACTCTGATCTTAGATCGGCAAATTTT
TTTATTATACGACAAATGCTTGAAAATTTATGGTCAAAAATAGAAACACT
GCACACGTTTTTGACATACTTTAACAACGGTGCAATTCATTGTATCTGCC
AAATGACGTGCCTTACGCGCCCGCGCGTCATCCTCTTTTTGACGCGCTTC
ACTCGCCTACGCACCTTACTCGCCCACGCACCTTACTCGCCCATGCACCA
TACGCAGCTCACGCGCCAATGCGACTAAACATCGTACGCGCCCTCGCCCA
AATTTCACTTGAATGCTTCGAAACACAGGTACACGTGCTTTCATTTTTCA
TTTTTATGTTTGGATGTGCCTGTAAGCATGGCTATATTGAGATGAGCTGG
ATTCTGCAAATCTTTGAAACTTAATAAGAATTTCATTTCCCTCAATTATA
CAGAATGATGATCTATCTGACTTTGACTGGGTATTATCAAAATCAAACGG
N
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_041200XLOC_041200Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00065765-exon-scaffold_444-1575043694:112262..112474TCONS_00065765-exon-scaffold_444-1575043694:112262..112474Clytia hemisphaericaexon
TCONS_00065765-exon-scaffold_444-1575043694:111845..112037TCONS_00065765-exon-scaffold_444-1575043694:111845..112037Clytia hemisphaericaexon
TCONS_00065765-exon-scaffold_444-1575043694:111179..111531TCONS_00065765-exon-scaffold_444-1575043694:111179..111531Clytia hemisphaericaexon
TCONS_00065765-exon-scaffold_444-1575043694:110549..110727TCONS_00065765-exon-scaffold_444-1575043694:110549..110727Clytia hemisphaericaexon
TCONS_00065765-exon-scaffold_444-1575043694:109624..109671TCONS_00065765-exon-scaffold_444-1575043694:109624..109671Clytia hemisphaericaexon
TCONS_00065765-exon-scaffold_444-1510915933:112262..112474TCONS_00065765-exon-scaffold_444-1510915933:112262..112474Clytia hemisphaericaexon
TCONS_00065765-exon-scaffold_444-1510915933:111845..112037TCONS_00065765-exon-scaffold_444-1510915933:111845..112037Clytia hemisphaericaexon
TCONS_00065765-exon-scaffold_444-1510915933:111179..111531TCONS_00065765-exon-scaffold_444-1510915933:111179..111531Clytia hemisphaericaexon
TCONS_00065765-exon-scaffold_444-1510915933:110549..110727TCONS_00065765-exon-scaffold_444-1510915933:110549..110727Clytia hemisphaericaexon
TCONS_00065765-exon-scaffold_444-1510915933:109624..109671TCONS_00065765-exon-scaffold_444-1510915933:109624..109671Clytia hemisphaericaexon
TCONS_00065765-exon-scaffold_444-1491911889:112262..112474TCONS_00065765-exon-scaffold_444-1491911889:112262..112474Clytia hemisphaericaexon
TCONS_00065765-exon-scaffold_444-1491911889:111845..112037TCONS_00065765-exon-scaffold_444-1491911889:111845..112037Clytia hemisphaericaexon
TCONS_00065765-exon-scaffold_444-1491911889:111179..111531TCONS_00065765-exon-scaffold_444-1491911889:111179..111531Clytia hemisphaericaexon
TCONS_00065765-exon-scaffold_444-1491911889:110549..110727TCONS_00065765-exon-scaffold_444-1491911889:110549..110727Clytia hemisphaericaexon
TCONS_00065765-exon-scaffold_444-1491911889:109624..109671TCONS_00065765-exon-scaffold_444-1491911889:109624..109671Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_444supercontigscaffold_444:109624..112474 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
314.891	309.169	177.487	148.036	7.64283	5.2689	12.2931	12.0315	26.1238	17.0966	15.7908	35.4558	41.8058	47.8051	255.667	290.953	7.21842	7.06631	648.301	350.362	0	0.0377163	247.914	211.458	0	0	12.9687	11.3212	116.412	143.479
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00065765 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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