XLOC_040606 (gene) - C. hemisphaerica

Overview
NameXLOC_040606
Unique NameXLOC_040606
Typegene
OrganismClytia hemisphaerica (Jellyfish)

Sequence
The following sequences are available for this feature:

gene from alignment at scaffold_423:254831..265370+

Legend: gene
Hold the cursor over a type above to highlight its positions in the sequence below.
>XLOC_040606 ID=XLOC_040606|Name=XLOC_040606|organism=Clytia hemisphaerica|type=gene|length=10540bp|location=Sequence derived from alignment at scaffold_423:254831..265370+ (Clytia hemisphaerica)
GTTGGTGACTAAGACTCGTATTGATTTAACAGTACATCGTCGATTAGGCT
AGTTAGAGTGCACTAGGCTCTGCTCCCATCCAAAAACTGTGAGTAAAAAC
TTTATCGTAGACAGTTCTAACGGGATGATTCTAACCACTTAATACTGGTC
CACTATTGTAAAGAGAGGCCAGAGGTCATGATATTGAATGCCCAGGAAAG
ATTATTAAGATGCAATATTCTAGATTGACAATTTCAAATTGCTCCCCTTT
GTATAAATAACGAACTTCTTTCTTTTAGTTACAATAAATGCTAAAAATGA
TAAACATGAGTTGAAATATAAAGACGGTATTGAAATTTGCAACATGAATA
GGAATTTGTGCTGCGATGTTTTTTGTAaggtaaattttttatttcttact
CGAAACACCATTTTGCCCTTTGGCCAGTACAAATTCTTCGCCAATTCAAA
CCTGAAATAAGTCGGAACTTATTTGGCGTGACAACTTCATTTTGATAAAG
ATTTACTATTTTGTTTGTTAGGATTAGGGAAAttaggtttttttttcata
ggtggtttcaaaaagtttttaagtGGAGTTGACACGCCCTTCTATATTAT
ACTGGAAAGTACcttttgatatttgtttttcattttcaatttctatattt
tttctaCATTATAGGTTTGGACTTTTGACATGCTGAAAATATGAGAAAGT
GCTAAAGCCTTTAGAAAATAGTAAGTGACTAatttatttgtttacatttc
aaGTTGGAGAGAGATCTGTCTCACGATAAAGATGCAACTTTTGAAACCAA
AATAAAGTTTCGTTAAGAATTCGTGATGCCCCTTCGAGTCTCCGCCTTGA
TGCGAGGTTAAGAATAACTTTTGTTTCGTCTAGACAAAACcacttttctg
tttttctttgcatCATTTTTAAAGGGTACTTTCAAAAATAGACTTTTAAT
TTTATCTGGTTTGTTTGACCCATACCAAAAGACCGAATGGAGCTTGGCTG
TtctatcctgttcttatttcagGGCAAGATTTCGGttattttaggcttta
tacCCAAATTTTCCTACTTTGGTCTTTAAATTCCTTGAAATTCAACAATT
TCAGGGGtaagaaaaagctttttttagaAAGAGGGGTAAAGATTTCTGaa
gtgaactaattttggcgacaACCATTAGTTAATATTCTAAAGAAATTTAA
CTAGTAATTAATTTTGGAGAACTAATCTTGGCAAATGAGAGGTGAATTGG
TTCTGTCTTGCCTAAAATAACAGTAATTCGGACAGTAATTAGTAgtcatt
ttagaaaataaaaaaaaaacttttgtaaaattcGCCAAAACCTTAAGGAA
TTTACcttaaaatatgtttttcaaaattacaagtNTTTTGTAAAATTCGC
CAAAACCTTAAGGAATTTACcttaaaatatgtttttcaaaattacaagtA
TTGACCAgtaaaaacaataaaaccaaCTTATATATaccttcaaaagaaaa
agattagAATTAGGGGCAATATTCGCTATCTTAGATAAAAGTGGTGCTTC
TCTGATTGCGTAGCTACATTTTGCGGAAAGGGGTAGTAGTTATGAAGGGA
GGGGTGAGTCTCAGAAGGGAGGGGTAGACACATTATGTGAACCCCCCAAT
AGAAAGAGTGATCTGTGTTAAAAAGTATAAAGATCCTGTCTATGCCAATT
TTATGATTGAATCAGGCTCAATATTTTGACCGCTACATCAATGAGATTCA
TTATTGCGAAACACTTTGTCTATAATTATCCAATTCTACGAATTATTTTA
GGTTGCGTAACTTGGTTGTTGAGACAATGCAAGCTGGTGCTATAGTCATG
AAGAGATGCACGTTCGTTGTTTACTTGTCTTTGTCTGAAGGTTTGTTATC
TCTTGTACAAGTGtatttttctcttcaaaaaaaTCCCTTTCAAACGAACC
GCACTAAAGGTTATTTTTGTTAAGTGTCCGCTCTACTAAACTATGCAAGA
CCAAACTGGCcaaagaggaaaaaatgttcaataTCAACTTTGATCATTAC
CGTATGCCTTGTATGTTTAGACATATATCGAAAGCATCCAACCGaggatc
tttttttaaatatctgtttccaagacatagccttcctggaaaatttgatc
tgttggccgaatatttcaaaaatcttattcctagaaatgaagatctgttt
ctccgcaaaacctaaatttttaatctcaaNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTTTTCccaaataggat
atctgttcccctcttctggaaattttcatctgtttccctttctttttgtt
attgatatctgtttcccccataaagttcaatctgtttctaatgcaacttt
ttggattttttggaaacagatatctgtttcccaatttattatgtcatctc
ctagaaatattgatctgtttctctctgatgacgtcatcagctggagcggg
gaaacaGATAGTTTTAAGGAAAAGGtctctcctagaaaatcggatctgtt
tccccaattttcaaaaaaagctctctcctggaaaagggaaacagatattt
cggggaaatgggctcgttggctgcttctgataTATGATTGCTGTTCGGAG
TCTGACTCAACTCAGCATGAATGAATTTTTTGGGTAATGGATAGTAATCC
CCCATTAAAAATAACAGCATCATAAAGctgaaatataaattttgtatCTT
AAAAGGTTCAGGGTGGTGGGCGGGTTCTGTTTTGGTCTGTTGATTTATTT
AAGTAACTTGAATACCTTGGTGACCCTATTGACACTGATACACCACCAGC
TATGACGTGCCATTACTTTCGGtaacataaactttcgcgatgTATGGCCt
gtttcgcgaaaattaatgtctttgaaatttcttgGCAAGGCAATTAGCGA
AATTAATACAAGCTAACAATTCTTATGTGAAATGTTAAGTATAATTTATC
TCCGAGTGTCGCCcattcaagaaatattttgttttaagaTGATTCTTTAA
AGGAAAATCTGAGTGTTTAAATTGTTTAAAGGCGTTTTTATTGTAGTAAA
GTTTGGGATAATTTTTTGGCTTAGGGCCCGGGAATCTTTGAACATTTTGT
ACCTATCGACCTTCGTTGTATTCTTCACGGTTGATTTCCTTGGCTAGGAG
ATAACTTTCAAAGCTAGTTATGAAGGCGGAATGTTTTGACAACTTGAAGT
TACCTAGGGTGACCTAACTACCCTCTCAACATTATAGAGAATAGTAAAAA
AGATGAGAGTGAGTCCTTTTAGATTGCGTGATGACTCTCTCAAGAGGGCT
TTCGTCATCATCtagttttatttttcactttttactttttctcttAATGT
TAAAGTTTAATTATAATATGTTAAGAACTGCCAATTtatgtttattttca
ataatCGACCAATCAGCATCCAGCTTGTTATTTTTGAGGGTCCCTTTTAA
CTTGAATATTAAAGTGGCTCAGGCTACTTTTTAGATCTCATTTGCTCTTT
TACTTAATTTATTTCGACGTGAGATTTTgggtgaaaaacaaaaacaaaca
gtcAATTCACAATCAATGCACTTTAATCAGTCATATTGCTGCGAAATTTC
AAAACTCAATTCAGTACTTTATTCAATTGATAGCTCTTCCTATTGAGCTG
CGCAGAATAGATCCGCAATTATTTCGAAAATTGTTTTGTAGTGAGAAAAT
TGAGTGCGAAAGACAACAAACATACTAATCTTTATTGAATATAATTTTGC
GTAACTTGCACCCGCCGCAAtgaatttctaattatttcaaaatctttcgc
TGCGTCATTACATTCTTTTCTTCATATTTTAACCCTTGAAGTACCTTTTC
AGGTATTTTCAAGTGAATGTATCTCAATTAAACCGTAAACCCTTGAAGTA
GCTTTTCATGTATTTTCAAGTGAATGCATCTAAATTAAACtgtaaaattt
tcactttttggtaTAGTATAATTTAGACAGAATGAAAATATCCTATAGGT
CAATTTTAGTAAATGTAGCATATTACAAGGTGAACGTTACTTGAGGGCCT
AGCCACCTCACATAGAATTTGAATCGACACTGGCTCTGAAAGGGTTAAAA
AGTCcatctatttcaaaaattgttttgttgtgaGAACTTTGGGTGCTAAA
CACTAATAAACACAAAAACTCGATGAACATTGATATTTTAATATGACGAA
ATTATCCTATGACACGGTGCTTTCAGCCTGAGGCGGGCGTTAACAACATT
CAAACTGTTGTATCGGCGGAGGGTGGTGCTAGGTTTGAGGATGACGGATG
GCTTGACTTTTCGGGATTTTTCCCTTTTTAGTAATACTTTGGGAGctgaa
tttatattttttagttttacgAACCTTATCGGGATTTTACCGAACCTTAC
CGACGCATACCCGTATGCATGACCATTTTACTAGGCACCATTCTGTAATT
CTACAGAAGTAAATACCCTTGTGCAATTTAAATTCACACCATGCGGGCAG
TTTTTCAGAATTATTTCCACATATTTGGacaatgggctgttccattaaaa
atccatacaggggggggggggacgaattcaagtcaaaaaaaattgtttga
aatgtgtggatacccccctGGAATAtagcaaaatttgccaaaaattcctt
ggaaaaaatactaacccctggaaattttagaataactttttacctccTGG
AAGAATGAAAGAAAGCACTCcattagaccccctggaaattcctCTCGGGT
TACCCCTTGGAAATGTTCGCCCCTCAGTATGCATACACAGTGGAATAGCC
CAATAACCACTCATTGACACTTTTTGTCCAAAAATAAATTACAACAATTT
CTAGTTGGGTGGCTGGTACTTTGTCTTACAATGTCACTAAATTCGATAAA
ATATATGAATAGAAAAACTTGAAACTGCTCTCAGACACTAAGCGGCTTAT
CTTGTTCCATAAATAGGTGCACGTGGTGCAATATCAATTCTGAGTCTTGT
TTTTACTGGCAGTTTCCTAAAGTTTATATATTGTTTTCCGCGAACTTTCA
AAAAGCAAAAAGCTGTTGTTCAAAACCGAAACCTAACTTTAGGAAACGTA
GGAACAAAATCATCTTAAATCGAGTCATTTTTGTCCAAACATATAGAATT
TGTTAGAAAAATCTTTTAAGGATATTAAATGTACTGCTGGAGTAAGAGAG
GTGGGACCAAGAGAGCCTTCTATATCCAAAATTTATGAATTATGAATATA
TCCCTATAAACTGAGGATTCAGTTTTCCTGAGTAATTCCGGTAATAAATG
ATCGACTTCGACTCCGACTATGATCCTGACCCTGGAATAAGGCCGactcc
aaatttaaaaaaaggccgaccctcgacccAAAAACAATAAAACCCTGCAT
AATAAACCAGTTCTTCGGCAGTTTTTATAATTCATAATTTGCAAGGATGA
GGTACAGGAATTATCCTCGGCGCCATAGTCGGCCAAAATTGAGCATGCAG
GTAGGGGCAGTCCTAGTGGGGGTGTTAAAACAATAAAAGCATTCTTTCGA
GAAAAAGTTTACAATCTATACCTTTAAAAAAGAcgaggaaataaaaaaaa
cggaCCCGATCTAGCCTTATCTTTCACCTCGGTATTGTTACCCCAATTAC
AATTACCccatgtttaatttttttgttttccaatttttaaaatgGTCTTA
CATAGTTGTAAACAAATTCTAATCTATCCAAAAGGCCGAAGGCATTCTAA
CTTTGACAAGGCTTGGAGCAGAAGGAGAAGAATATTACGAAAAATCGAGA
TTcaagtttcgaaaaaatttaaaatataaaaactaaaaaaatcgTTCTCG
GaattaaattttgattaattttaaattcataaaaactaattttttccaAG
ACTTTGTTCCTTTTCTTAGCGTCCGTTCGGAAATAaaaatacccctgtct
cacagccccgctgaaacttttttccaacattggggataaaaatttccatc
taaatcccgatggggatagaaattccatCTCAAAAAATCCAGTAGGGACT
GTTTTGGagtagattttttttgctctgaATTCCGAATGAGTATAAATCAG
TTTCAATTTTCCAgtagggctgaaattgtagCTCATTTCCCACTGGGGAC
TAAAGTTTGGCCAGATTTGGCGGAGGTCCACCCGGgtatgtgacacaggg
gtggATAAAAGAAGAGGGAAGTGAATATCTAGAACTTTATGAAAAACTGT
TCGACGCTGGGACGGTTCCTTTGTTGTTTTTCATCGTGCAGATATgtatt
cgaaaaaaataagaGTCGGAAGGTAGCAATGCAACAAagagttgaaaatt
caaaacaagacAAAAATGACATCCATCGACGCTATCATCTTCCTGATTCT
CTTTTTCACACAGGAcatcaaatatgaaaaatattttgaaacaaacTGTT
GCAAAGCGTGGGCTTGCCTTCTCCTGTTATCTGCATCCTGAAAAAGAGAT
TCGctaaccccctggaaatatttCTGTTTGCCTCTTTCAGATGCTTATAT
GATGGTATCAAAGATGGGGGTCTGCATGAAATACTTTCATCACTGTTCTA
ATtaaaacaaaagtttcaatttatcaAAACAATCATGCTGTATGCAAAAG
AGTTGATTTCCTGGACATTTTAGAATTCTTTTCAATGTCCAATATCCTGT
CAAGGACGTTACTTTTTAACAACTTCTTGTCACAAAAAAATATGGAACGT
AATGTGACGTCATAAAGTGTAAATTTGGTAGCTATAGATCTCAAATGAAC
AGTTTTTTTGTGGAACATATCGTTATTTCCTTTTGAATTGACGAGTAGAT
GCAAAAACGGAAATACTTGAGCAAAACAAATCTAACGATCCTCTCCAGTA
TAAAAAGAACGCAGTTGAACCCTAAGACCTTTTCTACTCCATATATAGCA
CTTTGTCTCGTTTTCACTCTCATACTGCTCCGCGCTTGATGGCGCTCACT
GCACTGTTGTTGAAAATGTTGAGTGGCTGTTGTCTGGTATATGAGAAAGG
TTACATACATACTCGTGCTCTTCAAAAGCTGCAGTGTTTATGGCTATTCA
AAACCACAATGTAGACTAAACgaattttcctttctttcatTTGTgtatta
tttgtttatttttttctattttttgcaaTGCACTTCACCTTTTGATTTTG
GTTGTTACTTTGTGTGATGTGATGATGGTGATAGCGGGGTCGAGATCGTG
TTTCGTCACCAGTCCCTCCGTATAAAAGGCAGGGTTGGTTCACTTCTCAT
TCATAATTGAATAGAACTTCTAAAGAGTAAAGATTAAATACTTAAAACGG
TGTATCTATCTCTGGTTCGTTGTCTTGATTGATGTACGCTCAACCTGTAG
TCGACAATGTCGTTGATAATTTGTTGCTTCCACAAATTGTTGAATAAATC
GTCTGTCTTCTGCTTCTAACACGGGTATTGCGCTGACGGAAACTCTCAAA
CTATCATATTATATCCATAGCTCTTTACGGTTTTATCAAACTAACCTTAT
GAATGTTGGTCTAGTCTTATTGAATCTCTTCTTCGTCTCACCTCATACCA
GCACCGAATCTAGTCTGTAActagttttaaaatatttaacaatCAATGTC
TTATAAGGGAACTATTTcatcacaaaacaaaaagttgacAACATNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAAGGT
TACATACATACTCGTGCTCTTCAAAAGCTGCAGTGTTTATGGCTATTCAA
AACCACAATGTAGACTAAACgaattttcctttctttcatTTGTgtattat
ttgtttatttttttctattttttgcaaTGCACTTCACCTTTTGATTTTGG
TTGTTACTTTGTGTGATGTGATGATGGTGATAGCGGGGTCGAGATCGTGT
TTCGTCACCAGTCCCTCCGTATAAAAGGCAGGGTTGGTTCACTTCTCATT
CATAATTGAATAGAACTTCTAAAGAGTAAAGATTAAATACTTAAAACGGT
GTATCTATCTCTGGTTCGTTGTCTTGATTGATGTACGCTCAACCTGTAGT
CGACAATGTCGTTGATAATTTGTTGCTTCCACAAATTGTTGAATAAATCG
TCTGTCTTCTGCTTCTAACACGGGTATTGCGCTGACGGAAACTCTCAAAC
TATCATATTATATCCATAGCTCTTTACGGTTTTATCAAACTAACCTTATG
AATGTTGGTCTAGTCTTATTGAATCTCTTCTTCGTCTCACCTCATACCAG
CACCGAATCTAGTCTGTAActagttttaaaatatttaacaatCAATGTCT
TATAAGGGAACTATTTcatcacaaaacaaaaagttgacAACATCTTTTTC
TTGATGTGGCTGCGCCTGTTCTCGACCCAGACTTCATGGTGTGACCGTTC
GTTTGATGTGGCCTAATAATTTTTTAAGTTCTTATGTTTATCATTCCTTT
TCAAACCTTCTTTTCATTATTTCGTCATTTTTTCACAATTTCagtgaaaa
acaaaacaaacaaacaaaactatCGACCATGACGATGTCAAATGGACCTT
TGTTACATTACCATCCCTCAGAAGAACATCAACAAACATTTACTTCTCAA
GCGCATCCGTTGAACCATGAAGGTGGTAACACGCCTCCATCCACACGACC
AGATGTTTGTTTCAACAATTCAAATAATTACACCACTTTTTTTCACGACC
ATCATACGTCACACTCAACCTTGATGACGTCACTGCAAGAAACAGATGAA
GATGAGGTTAAACGTCCTATGAACTCTTTCCTTCTATGGGCCAAAATTAT
GCGTAAACAATATGCCAGTAAGAACCCCAACATGCATAATGCTGAGATCA
GCAAATTGTTAGGCAAGATATGGAATTCTATGACAACAAAAGACAAGCGG
CCGTACGTCGAACAAGCGGAACGCTTACGCGTTGTTCATATGAGGACGTA
CCCCAACTACCGTTACGCACCTAAGAGACGTAAGGAGCGCCGCAACCATC
GCATGATCTCGCCAGAAGTTGCAGCCGCCCTCCATAACACCCTCTTTGAT
GTCAATAACATCATAAATGAACAGATTTCTCAAACAGACGTCCTCTcaca
aaacttaaaaagttacgGCTATCTCCGTAGCGCTTTTCAACAAAACCGTA
ACAAAAACATCGGAAACGTTTCTGATTCGCACTCCGACAGCTCATTCTCA
AGATGTAACACAGCCAGTCCTTTACCGTGTTCGGAACAAAGCTTTTCTTC
AGCCTCATCGTGCGAATATCAACTCCAATTGCCGGCAGAAAATCAAATAG
CTACGGAACCGGCCAAAAACCACACGGAATCAATGACATTACACTACCGA
CCGGTCACAAACACAAACTGTGCTGCAACCACTTTCACACAACAAAGTCA
AACACAGACTGTCGactatttttcatcttcaagcAGCGAATCGAACGATA
GTGGTGCGGAAGACGACACTAACTCCTCAATCGAAGACGAATTTTCTAAT
TATCTAAAACATATTACGTCATCAAGAAATACTGCAAGTGGATTGGTGGA
AAATGATGACGACTCGTTCTTTTGGAATGATATCACTGACATTATAACTT
CTGGATCTTTATAAATTATATCCAACTCATTTGACGAAACCATTTATCTA
TACTTAAAATGATATAACCATCATTAAATTAACCTCATAGTTTAAAAAAC
GAACGCCTTCTAATTTATGACTTATATTTGCACTCCCATATATAATGACA
CGAACCCTCTTGTACATAAAAATGACTTTGTTATGTATTTTATTCAAACC
ACCCTGTACATAGCGATGTGGAAATAATCTTGTATTTTCT
Gene-mRNA-Prot
The following transcript feature(s) are a part of this gene:
Feature NameUnique NameSpeciesType
TCONS_00064744TCONS_00064744Clytia hemisphaericatranscript
TCONS_00064745TCONS_00064745Clytia hemisphaericatranscript
The following polypeptide feature(s) derives from this gene:
Feature NameUnique NameSpeciesType
TCONS_00064745-proteinTCONS_00064745-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_423supercontigscaffold_423:254831..265370 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.35	0.23	0.3	0.18	0.94	0.74	0.72	0.74	0.34	0.25	0.22	0.75	2.29	0.94	0.32	5.38	3.52	2.48	1.13	0.89	0.67	0.72	1.25	1.06	0.17	0.29	0.06	0.16	0.09	0.15